Wall clock time and date at job start Tue Mar 31 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99968 * 2 1 4 4 H 1.48499 * 109.46884 * 264.92260 * 3 2 1 5 5 H 1.48501 * 109.46938 * 24.92288 * 3 2 1 6 6 H 1.48494 * 109.46961 * 144.92333 * 3 2 1 7 7 C 1.37881 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99362 * 5.40921 * 7 2 1 9 9 C 1.50694 * 119.99988 * 185.40741 * 7 2 1 10 10 N 1.46500 * 109.47173 * 174.82298 * 9 7 2 11 11 C 1.46499 * 119.99648 * 264.42123 * 10 9 7 12 12 C 1.50698 * 109.47370 * 89.99874 * 11 10 9 13 13 C 1.38678 * 120.41378 * 269.71758 * 12 11 10 14 14 C 1.38626 * 118.41620 * 179.77885 * 13 12 11 15 15 C 1.38233 * 119.16168 * 0.51889 * 14 13 12 16 16 N 1.31851 * 120.76478 * 359.72612 * 15 14 13 17 17 C 1.31892 * 121.72477 * 359.97438 * 16 15 14 18 18 C 1.34773 * 120.00503 * 84.41721 * 10 9 7 19 19 O 1.21508 * 120.00618 * 184.96492 * 18 10 9 20 20 O 1.34641 * 119.99679 * 4.96151 * 18 10 9 21 21 C 1.45202 * 116.99888 * 185.40600 * 20 18 10 22 22 C 1.52998 * 109.47020 * 180.02562 * 21 20 18 23 23 F 1.39904 * 109.47225 * 65.00218 * 22 21 20 24 24 H 0.97001 * 120.00397 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47297 * 294.81523 * 9 7 2 26 26 H 1.09000 * 109.47353 * 54.81569 * 9 7 2 27 27 H 1.08997 * 109.46933 * 209.99902 * 11 10 9 28 28 H 1.09002 * 109.47189 * 329.99422 * 11 10 9 29 29 H 1.07994 * 120.79396 * 0.02883 * 13 12 11 30 30 H 1.08000 * 120.42417 * 180.22229 * 14 13 12 31 31 H 1.07998 * 119.61850 * 179.74078 * 15 14 13 32 32 H 1.07996 * 119.61660 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47269 * 300.00121 * 21 20 18 34 34 H 1.08993 * 109.46877 * 60.00039 * 21 20 18 35 35 H 1.08996 * 109.47122 * 184.99691 * 22 21 20 36 36 H 1.08996 * 109.47076 * 305.00444 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6039 1.9845 -1.3946 5 1 1.3970 2.6813 0.5900 6 1 3.4888 1.4736 0.8046 7 6 2.0045 -1.1941 0.0005 8 1 1.4681 -2.1272 -0.0872 9 6 3.5064 -1.1969 0.1235 10 7 3.9857 -2.5777 0.2233 11 6 4.2385 -3.1720 1.5382 12 6 2.9827 -3.8382 2.0383 13 6 2.0679 -3.1287 2.8018 14 6 0.9245 -3.7811 3.2362 15 6 0.7407 -5.1106 2.9054 16 7 1.6345 -5.7553 2.1816 17 6 2.7308 -5.1651 1.7464 18 6 4.1938 -3.3012 -0.8946 19 8 4.5041 -4.4730 -0.8109 20 8 4.0579 -2.7256 -2.1041 21 6 4.1784 -3.5914 -3.2635 22 6 3.9969 -2.7649 -4.5382 23 9 5.0460 -1.8463 -4.6517 24 1 -0.4851 0.8400 -0.0004 25 1 3.9439 -0.7232 -0.7554 26 1 3.7989 -0.6453 1.0170 27 1 5.0342 -3.9123 1.4553 28 1 4.5394 -2.3921 2.2377 29 1 2.2402 -2.0916 3.0487 30 1 0.1888 -3.2586 3.8297 31 1 -0.1454 -5.6272 3.2435 32 1 3.4400 -5.7256 1.1555 33 1 5.1645 -4.0558 -3.2693 34 1 3.4125 -4.3656 -3.2199 35 1 3.9987 -3.4272 -5.4039 36 1 3.0486 -2.2296 -4.4922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858883400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:55 Heat of formation + Delta-G solvation = -111.266039 kcal Electronic energy + Delta-G solvation = -22525.388719 eV Core-core repulsion = 18923.603252 eV Total energy + Delta-G solvation = -3601.785467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.60367 -41.62919 -40.80852 -38.11356 -36.82247 -34.68960 -33.57335 -32.61112 -31.65187 -29.97643 -27.51626 -24.83619 -24.36557 -23.94852 -23.14584 -21.45851 -19.11347 -18.93709 -18.25733 -17.94819 -17.72734 -17.10970 -16.76991 -16.73575 -16.23389 -16.06585 -16.00062 -15.39325 -14.75221 -14.59502 -14.39491 -13.98994 -13.90359 -13.88995 -13.72937 -13.44879 -12.71029 -12.60068 -12.48327 -12.30994 -12.03331 -12.00047 -11.70730 -11.64859 -11.52549 -10.76858 -10.62124 -10.42128 -9.94931 -9.59334 -8.25208 -6.29536 0.15908 0.44370 1.32897 1.40665 1.44529 1.50706 1.84764 2.36373 2.85072 3.06663 3.12999 3.56631 3.58848 3.81374 3.90728 3.94235 4.03920 4.14977 4.18745 4.26014 4.38754 4.50495 4.60075 4.66714 4.77850 4.84127 4.90303 4.91668 5.26123 5.29517 5.44192 5.47212 5.54377 5.85691 6.21594 6.45104 6.72024 7.05639 7.26242 7.38069 8.90716 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.011479 B = 0.008022 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.702142 B = 3489.363518 C = 5177.769985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.518 4.518 8 H 0.024 0.976 9 C 0.220 3.780 10 N -0.575 5.575 11 C 0.178 3.822 12 C -0.158 4.158 13 C -0.044 4.044 14 C -0.178 4.178 15 C 0.086 3.914 16 N -0.517 5.517 17 C 0.101 3.899 18 C 0.649 3.351 19 O -0.604 6.604 20 O -0.371 6.371 21 C 0.043 3.957 22 C 0.068 3.932 23 F -0.230 7.230 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -4.194 0.698 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.557 4.557 8 H 0.042 0.958 9 C 0.098 3.902 10 N -0.311 5.311 11 C 0.056 3.944 12 C -0.161 4.161 13 C -0.070 4.070 14 C -0.197 4.197 15 C -0.071 4.071 16 N -0.227 5.227 17 C -0.055 4.055 18 C 0.404 3.596 19 O -0.497 6.497 20 O -0.285 6.285 21 C -0.032 4.032 22 C 0.014 3.986 23 F -0.211 7.211 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.196 0.804 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.366 -5.272 0.442 9.070 hybrid contribution -0.233 1.561 -0.083 1.580 sum 7.133 -3.712 0.360 8.049 Atomic orbital electron populations 1.70050 1.08164 1.28024 1.51734 1.25630 0.95311 1.02460 0.94071 0.85944 0.79863 0.78997 0.79401 1.19956 1.21193 1.15794 1.21266 0.91097 0.92833 1.50484 0.95765 1.19673 0.93478 0.78440 0.98575 1.46899 1.66324 1.14942 1.02971 1.20442 0.93554 0.98715 0.81671 1.21265 0.99838 0.95405 0.99624 1.21681 0.92641 0.99727 0.92977 1.22384 0.98670 0.96289 1.02401 1.23183 0.97776 0.92497 0.93610 1.67665 1.03320 1.40307 1.11374 1.22743 0.94290 0.92665 0.95829 1.18149 0.76477 0.83209 0.81739 1.90859 1.55998 1.15604 1.87265 1.86377 1.85492 1.42265 1.14319 1.23863 1.04180 0.93080 0.82057 1.22346 0.88571 0.91012 0.96678 1.92750 1.61166 1.70000 1.97212 0.92515 0.94826 0.92176 0.88251 0.86360 0.84266 0.82906 0.80403 0.83267 0.89660 0.89325 0.83777 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.89 13.96 21.45 0.30 -54.59 16 2 C 0.02 1.28 5.47 84.66 0.46 1.74 16 3 Si 0.93 39.96 27.48 68.60 1.89 41.84 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.23 -8.82 6.58 99.48 0.65 -8.17 16 7 C -0.52 -27.15 9.88 25.60 0.25 -26.90 16 8 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 9 C 0.22 9.43 4.28 85.63 0.37 9.79 16 10 N -0.57 -22.80 2.45 -960.93 -2.36 -25.16 16 11 C 0.18 5.75 5.56 85.63 0.48 6.23 16 12 C -0.16 -5.60 5.48 -19.77 -0.11 -5.71 16 13 C -0.04 -1.51 9.86 22.47 0.22 -1.29 16 14 C -0.18 -5.69 10.11 22.36 0.23 -5.46 16 15 C 0.09 2.77 11.18 84.69 0.95 3.71 16 16 N -0.52 -19.14 10.36 -195.84 -2.03 -21.17 16 17 C 0.10 3.77 10.76 84.67 0.91 4.68 16 18 C 0.65 27.00 8.33 129.79 1.08 28.08 16 19 O -0.60 -25.40 15.00 19.82 0.30 -25.11 16 20 O -0.37 -14.89 9.11 -55.50 -0.51 -15.39 16 21 C 0.04 1.28 5.96 71.98 0.43 1.71 16 22 C 0.07 1.61 7.93 71.98 0.57 2.18 16 23 F -0.23 -6.88 17.35 44.97 0.78 -6.10 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.03 1.48 7.03 -2.38 -0.02 1.46 16 26 H 0.06 2.32 6.80 -2.39 -0.02 2.30 16 27 H 0.10 2.97 7.45 -2.39 -0.02 2.95 16 28 H 0.12 3.08 7.81 -2.39 -0.02 3.06 16 29 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 30 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 31 H 0.18 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.15 5.55 7.41 -2.91 -0.02 5.53 16 33 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -70.43 320.86 5.24 -65.19 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.03 Total: 21.72 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.84 Total: 18.77 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.09 Total: -100.92 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.21 Total: -40.50 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.78 Total: -6.10 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.89 Total: 41.84 kcal Total: -70.43 5.24 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858883400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.081 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds