Wall clock time and date at job start Tue Mar 31 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.50699 * 109.47184 * 270.00097 * 3 2 1 6 6 O 1.20825 * 119.99785 * 354.99981 * 5 3 2 7 7 O 1.34229 * 120.00090 * 175.00305 * 5 3 2 8 8 C 1.45197 * 116.99951 * 179.97438 * 7 5 3 9 9 H 1.08999 * 109.47668 * 330.00385 * 8 7 5 10 10 C 1.53007 * 109.46970 * 90.00038 * 8 7 5 11 11 C 1.50700 * 109.47398 * 209.99957 * 8 7 5 12 12 H 1.08003 * 119.99949 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00103 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00160 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99816 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47230 * 59.99706 * 15 13 11 17 17 H 1.48497 * 109.47077 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47292 * 299.99605 * 15 13 11 19 19 C 1.50701 * 109.46878 * 150.00028 * 3 2 1 20 20 C 1.38247 * 119.97165 * 39.72314 * 19 3 2 21 21 C 1.38203 * 120.02477 * 179.76464 * 20 19 3 22 22 C 1.38465 * 119.96835 * 0.50998 * 21 20 19 23 23 F 1.35100 * 120.02002 * 179.76798 * 22 21 20 24 24 C 1.38450 * 119.95341 * 359.74471 * 22 21 20 25 25 C 1.38200 * 119.97423 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 27 27 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 28 28 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47073 * 300.00132 * 10 8 7 30 30 H 1.08999 * 109.46962 * 60.00160 * 10 8 7 31 31 H 1.08998 * 109.47319 * 180.02562 * 10 8 7 32 32 H 0.96998 * 120.00082 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.98677 * 0.02562 * 20 19 3 34 34 H 1.07996 * 120.01717 * 180.25898 * 21 20 19 35 35 H 1.08003 * 120.01846 * 179.97438 * 24 22 21 36 36 H 1.08003 * 119.99151 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9800 1.0135 -2.3378 7 8 2.6569 3.0075 -1.6675 8 6 2.8310 3.3809 -3.0598 9 1 3.0845 2.4966 -3.6444 10 6 1.5311 3.9882 -3.5913 11 6 3.9416 4.3933 -3.1734 12 1 4.4640 4.7234 -2.2876 13 6 4.2900 4.8989 -4.4078 14 7 3.6535 4.4974 -5.4863 15 14 5.6670 6.1533 -4.5485 16 1 6.9287 5.5632 -4.0334 17 1 5.8450 6.5353 -5.9724 18 1 5.3226 7.3581 -3.7517 19 6 3.3386 1.2640 0.7104 20 6 4.1868 0.1878 0.5267 21 6 5.4073 0.1509 1.1738 22 6 5.7760 1.1874 2.0147 23 9 6.9669 1.1501 2.6515 24 6 4.9235 2.2621 2.2021 25 6 3.7055 2.2991 1.5501 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7278 3.2559 -3.5092 30 1 1.2776 4.8726 -3.0069 31 1 1.6616 4.2682 -4.6366 32 1 3.8988 4.8529 -6.3549 33 1 3.8972 -0.6223 -0.1261 34 1 6.0716 -0.6878 1.0269 35 1 5.2098 3.0709 2.8580 36 1 3.0404 3.1375 1.6958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860545684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:08 Heat of formation + Delta-G solvation = -152.232220 kcal Electronic energy + Delta-G solvation = -22149.360787 eV Core-core repulsion = 18513.506142 eV Total energy + Delta-G solvation = -3635.854645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.89007 -40.20985 -38.77959 -37.51338 -35.54618 -33.31856 -31.94496 -31.14025 -29.61430 -27.46770 -26.06194 -25.32702 -23.03302 -22.50270 -21.31411 -19.74114 -17.76089 -17.38696 -17.05906 -16.74046 -16.20963 -15.78244 -15.56403 -15.46600 -14.68360 -14.60764 -14.54058 -13.96591 -13.52346 -13.35196 -13.17017 -12.84794 -12.38935 -12.16185 -11.86874 -11.67592 -11.44709 -11.20347 -11.07934 -10.95601 -10.87858 -10.54606 -10.42195 -10.29285 -9.59090 -9.41478 -9.08240 -8.95035 -8.57909 -8.49026 -6.20171 -4.27223 1.05145 1.26496 2.81489 3.21431 3.25474 3.29334 3.34459 3.47367 4.01965 4.24889 4.33001 4.63029 4.73537 4.88025 4.97284 5.12886 5.27186 5.29870 5.41014 5.42441 5.62620 5.66087 5.88091 5.93698 6.11095 6.21907 6.41119 6.58206 6.82210 6.84828 6.85732 6.94331 7.10526 7.56645 7.68422 7.89508 8.10574 8.57723 8.84315 9.38225 10.87268 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.005986 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.147533 B = 4676.254491 C = 6314.857334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.142 3.858 4 H 0.103 0.897 5 C 0.432 3.568 6 O -0.503 6.503 7 O -0.351 6.351 8 C 0.216 3.784 9 H 0.046 0.954 10 C -0.155 4.155 11 C -0.521 4.521 12 H 0.069 0.931 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.094 4.094 20 C -0.056 4.056 21 C -0.157 4.157 22 C 0.103 3.897 23 F -0.142 7.142 24 C -0.155 4.155 25 C -0.061 4.061 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.267 0.733 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 -6.037 14.659 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C 0.082 3.918 4 H 0.121 0.879 5 C 0.273 3.727 6 O -0.391 6.391 7 O -0.267 6.267 8 C 0.164 3.836 9 H 0.064 0.936 10 C -0.212 4.212 11 C -0.559 4.559 12 H 0.087 0.913 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.738 3.262 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.094 4.094 20 C -0.074 4.074 21 C -0.176 4.176 22 C 0.084 3.916 23 F -0.120 7.120 24 C -0.173 4.173 25 C -0.079 4.079 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.613 -6.364 14.152 15.735 hybrid contribution 0.646 0.828 -0.336 1.103 sum -1.967 -5.536 13.816 15.013 Atomic orbital electron populations 1.22917 0.80156 1.03394 1.00399 1.87976 1.20466 1.24401 1.94321 1.20269 0.94059 0.86841 0.90639 0.87913 1.23785 0.75100 0.82067 0.91723 1.90616 1.46957 1.55298 1.46258 1.86483 1.74668 1.28936 1.36657 1.20651 0.94664 0.95931 0.72387 0.93622 1.22170 0.95776 0.98459 1.04821 1.20971 1.16876 1.24037 0.93975 0.91325 1.24878 0.97034 0.96876 0.95117 1.69883 1.40842 1.43414 0.98598 0.86341 0.81696 0.81041 0.77123 1.19940 1.20995 1.19901 1.19314 0.94889 0.96318 0.98895 1.20905 0.91836 0.97705 0.96972 1.21114 0.98251 0.99247 0.98953 1.17769 0.82060 0.96531 0.95277 1.91489 1.43798 1.96621 1.80127 1.21043 0.94702 0.98395 1.03197 1.20819 0.95963 0.97325 0.93827 0.93661 0.93298 0.88964 0.96652 0.94376 0.88162 0.92316 0.84305 0.84556 0.84388 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.81 101.05 1.09 1.41 16 2 O -0.35 -5.28 9.20 -55.14 -0.51 -5.78 16 3 C 0.14 2.19 2.83 -29.03 -0.08 2.11 16 4 H 0.10 1.28 7.65 -51.93 -0.40 0.88 16 5 C 0.43 9.03 7.19 36.01 0.26 9.29 16 6 O -0.50 -11.99 15.73 -25.46 -0.40 -12.39 16 7 O -0.35 -8.23 9.85 -39.25 -0.39 -8.62 16 8 C 0.22 5.79 2.56 -27.88 -0.07 5.71 16 9 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 10 C -0.15 -3.88 9.33 37.16 0.35 -3.53 16 11 C -0.52 -14.59 8.90 -34.44 -0.31 -14.90 16 12 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 15 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.09 -1.38 4.95 -104.62 -0.52 -1.90 16 20 C -0.06 -0.81 9.35 -39.59 -0.37 -1.18 16 21 C -0.16 -2.07 10.03 -39.51 -0.40 -2.46 16 22 C 0.10 1.37 7.30 -39.42 -0.29 1.09 16 23 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 24 C -0.15 -1.92 10.03 -39.52 -0.40 -2.32 16 25 C -0.06 -0.79 9.67 -39.59 -0.38 -1.17 16 26 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.14 1.99 7.77 -52.49 -0.41 1.59 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.47 8.04 -52.48 -0.42 1.05 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -31.67 322.03 -6.42 -38.09 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.41 Total: 0.46 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.21 Total: -6.21 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.29 Total: -26.79 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.67 -6.42 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.143 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds