Wall clock time and date at job start Tue Mar 31 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.50699 * 109.47184 * 270.00097 * 3 2 1 6 6 O 1.20825 * 119.99785 * 354.99981 * 5 3 2 7 7 O 1.34229 * 120.00090 * 175.00305 * 5 3 2 8 8 C 1.45197 * 116.99951 * 179.97438 * 7 5 3 9 9 H 1.08999 * 109.47668 * 330.00385 * 8 7 5 10 10 C 1.53007 * 109.46970 * 90.00038 * 8 7 5 11 11 C 1.50700 * 109.47398 * 209.99957 * 8 7 5 12 12 H 1.08003 * 119.99949 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00103 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00160 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99816 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47230 * 59.99706 * 15 13 11 17 17 H 1.48497 * 109.47077 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47292 * 299.99605 * 15 13 11 19 19 C 1.50701 * 109.46878 * 150.00028 * 3 2 1 20 20 C 1.38247 * 119.97165 * 39.72314 * 19 3 2 21 21 C 1.38203 * 120.02477 * 179.76464 * 20 19 3 22 22 C 1.38465 * 119.96835 * 0.50998 * 21 20 19 23 23 F 1.35100 * 120.02002 * 179.76798 * 22 21 20 24 24 C 1.38450 * 119.95341 * 359.74471 * 22 21 20 25 25 C 1.38200 * 119.97423 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 27 27 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 28 28 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47073 * 300.00132 * 10 8 7 30 30 H 1.08999 * 109.46962 * 60.00160 * 10 8 7 31 31 H 1.08998 * 109.47319 * 180.02562 * 10 8 7 32 32 H 0.96998 * 120.00082 * 180.02562 * 14 13 11 33 33 H 1.07997 * 119.98677 * 0.02562 * 20 19 3 34 34 H 1.07996 * 120.01717 * 180.25898 * 21 20 19 35 35 H 1.08003 * 120.01846 * 179.97438 * 24 22 21 36 36 H 1.08003 * 119.99151 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 8 1.9800 1.0135 -2.3378 7 8 2.6569 3.0075 -1.6675 8 6 2.8310 3.3809 -3.0598 9 1 3.0845 2.4966 -3.6444 10 6 1.5311 3.9882 -3.5913 11 6 3.9416 4.3933 -3.1734 12 1 4.4640 4.7234 -2.2876 13 6 4.2900 4.8989 -4.4078 14 7 3.6535 4.4974 -5.4863 15 14 5.6670 6.1533 -4.5485 16 1 6.9287 5.5632 -4.0334 17 1 5.8450 6.5353 -5.9724 18 1 5.3226 7.3581 -3.7517 19 6 3.3386 1.2640 0.7104 20 6 4.1868 0.1878 0.5267 21 6 5.4073 0.1509 1.1738 22 6 5.7760 1.1874 2.0147 23 9 6.9669 1.1501 2.6515 24 6 4.9235 2.2621 2.2021 25 6 3.7055 2.2991 1.5501 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7278 3.2559 -3.5092 30 1 1.2776 4.8726 -3.0069 31 1 1.6616 4.2682 -4.6366 32 1 3.8988 4.8529 -6.3549 33 1 3.8972 -0.6223 -0.1261 34 1 6.0716 -0.6878 1.0269 35 1 5.2098 3.0709 2.8580 36 1 3.0404 3.1375 1.6958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860545684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:08 Heat of formation + Delta-G solvation = -169.705077 kcal Electronic energy + Delta-G solvation = -22150.118467 eV Core-core repulsion = 18513.506142 eV Total energy + Delta-G solvation = -3636.612325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92749 -41.70991 -40.08050 -38.73572 -37.34333 -35.35738 -33.12665 -32.14755 -31.60780 -28.58151 -27.49027 -27.13836 -24.10395 -23.96939 -22.79215 -21.44135 -19.13386 -18.80642 -18.61377 -17.97847 -17.70134 -17.39802 -16.75356 -16.60476 -16.42386 -16.22712 -15.56709 -15.28122 -14.74347 -14.49712 -14.37786 -14.27113 -14.08862 -13.73839 -13.35475 -13.21072 -12.99347 -12.83145 -12.68031 -12.45715 -12.39178 -12.18773 -11.96586 -11.92008 -11.60285 -11.02200 -10.78095 -10.59991 -10.08869 -9.67583 -8.29342 -6.46200 -0.02335 0.25530 1.20229 1.41188 1.44850 1.52539 1.77946 2.37221 2.40603 2.84490 3.01488 3.22559 3.51446 3.70196 3.83639 3.91172 3.97673 4.31224 4.41442 4.45974 4.49212 4.52987 4.75585 4.80981 4.81268 4.87684 4.93956 5.10478 5.12317 5.18428 5.37572 5.47387 5.61037 5.81860 5.87556 5.91220 6.05029 6.58629 6.90718 7.25329 8.78148 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.005986 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.147533 B = 4676.254491 C = 6314.857334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.368 6.368 3 C 0.155 3.845 4 H 0.141 0.859 5 C 0.426 3.574 6 O -0.540 6.540 7 O -0.353 6.353 8 C 0.218 3.782 9 H 0.002 0.998 10 C -0.141 4.141 11 C -0.546 4.546 12 H 0.069 0.931 13 C 0.017 3.983 14 N -0.918 5.918 15 Si 0.980 3.020 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.260 1.260 19 C -0.112 4.112 20 C -0.072 4.072 21 C -0.160 4.160 22 C 0.093 3.907 23 F -0.143 7.143 24 C -0.151 4.151 25 C -0.060 4.060 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -4.844 16.541 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.286 6.286 3 C 0.095 3.905 4 H 0.158 0.842 5 C 0.270 3.730 6 O -0.431 6.431 7 O -0.269 6.269 8 C 0.165 3.835 9 H 0.020 0.980 10 C -0.199 4.199 11 C -0.584 4.584 12 H 0.087 0.913 13 C -0.183 4.183 14 N -0.556 5.556 15 Si 0.803 3.197 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.185 1.185 19 C -0.113 4.113 20 C -0.090 4.090 21 C -0.179 4.179 22 C 0.074 3.926 23 F -0.122 7.122 24 C -0.170 4.170 25 C -0.078 4.078 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.183 0.817 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.357 -5.186 16.059 17.039 hybrid contribution 0.528 0.348 -0.899 1.099 sum -1.829 -4.838 15.160 16.018 Atomic orbital electron populations 1.23191 0.78382 1.05031 1.01089 1.87982 1.22481 1.24178 1.93944 1.20349 0.95576 0.87827 0.86758 0.84223 1.25097 0.73307 0.80642 0.93979 1.90592 1.48476 1.55833 1.48186 1.86469 1.75331 1.30680 1.34413 1.20335 0.95307 0.94060 0.73794 0.98033 1.21982 0.95332 0.98989 1.03622 1.21253 1.17818 1.24800 0.94502 0.91277 1.25810 0.99332 0.98629 0.94496 1.70010 1.42086 1.44313 0.99142 0.85279 0.78293 0.78634 0.77519 1.19554 1.20272 1.18491 1.19433 0.94687 0.97257 0.99921 1.20950 0.92620 0.97937 0.97536 1.21279 0.98032 0.99945 0.98636 1.17963 0.82253 0.96983 0.95383 1.91486 1.43898 1.96654 1.80120 1.21372 0.94097 0.98591 1.02915 1.21128 0.96476 0.97273 0.92943 0.90379 0.95053 0.87056 0.95831 0.93094 0.90162 0.92001 0.85207 0.83004 0.81731 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -10.62 9.20 -129.95 -1.20 -11.81 16 3 C 0.15 4.59 2.83 29.10 0.08 4.68 16 4 H 0.14 3.07 7.65 -2.39 -0.02 3.05 16 5 C 0.43 17.95 7.19 71.24 0.51 18.47 16 6 O -0.54 -26.65 15.73 28.39 0.45 -26.21 16 7 O -0.35 -16.62 9.85 -51.41 -0.51 -17.12 16 8 C 0.22 11.98 2.56 29.85 0.08 12.05 16 9 H 0.00 0.12 7.16 -2.39 -0.02 0.10 16 10 C -0.14 -7.20 9.33 71.98 0.67 -6.53 16 11 C -0.55 -30.84 8.90 25.60 0.23 -30.61 16 12 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 15 Si 0.98 42.72 29.54 68.60 2.03 44.74 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 19 C -0.11 -3.17 4.95 -19.86 -0.10 -3.27 16 20 C -0.07 -2.07 9.35 22.26 0.21 -1.86 16 21 C -0.16 -4.09 10.03 22.32 0.22 -3.87 16 22 C 0.09 2.34 7.30 22.37 0.16 2.50 16 23 F -0.14 -3.60 17.27 44.97 0.78 -2.83 16 24 C -0.15 -3.36 10.03 22.31 0.22 -3.14 16 25 C -0.06 -1.41 9.67 22.26 0.22 -1.19 16 26 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 4.41 6.07 -2.39 -0.01 4.40 16 32 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.13 3.85 7.77 -2.91 -0.02 3.82 16 34 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.17 2.89 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -69.59 322.03 7.06 -62.53 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.09 Total: 13.00 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.18 Total: -9.77 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -1.26 Total: -55.15 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -69.59 7.06 -62.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.175 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds