Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00272 * 2 1 4 4 C 1.50699 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.85814 * 0.27312 * 4 3 2 6 6 C 1.37930 * 120.17586 * 180.27641 * 5 4 3 7 7 C 1.39651 * 119.89716 * 359.72666 * 6 5 4 8 8 C 1.47740 * 120.13462 * 180.02562 * 7 6 5 9 9 O 1.21468 * 119.99791 * 179.97438 * 8 7 6 10 10 O 1.34705 * 120.00033 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00181 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47364 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47039 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00240 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47460 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47070 * 120.00114 * 17 15 13 20 20 H 1.48502 * 109.46931 * 239.99547 * 17 15 13 21 21 C 1.39580 * 119.72995 * 359.97438 * 7 6 5 22 22 C 1.38198 * 119.81695 * 0.02562 * 21 7 6 23 23 F 1.35104 * 119.95219 * 180.02562 * 22 21 7 24 24 H 1.09001 * 109.47124 * 300.00031 * 1 2 3 25 25 H 1.08998 * 109.47375 * 60.00090 * 1 2 3 26 26 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46987 * 59.99920 * 3 2 1 28 28 H 1.09004 * 109.46708 * 300.00143 * 3 2 1 29 29 H 1.07997 * 119.91245 * 0.02562 * 5 4 3 30 30 H 1.07996 * 120.05343 * 179.70655 * 6 5 4 31 31 H 1.08998 * 109.46762 * 300.00389 * 11 10 8 32 32 H 1.09002 * 109.47008 * 59.99401 * 11 10 8 33 33 H 1.08995 * 109.47218 * 300.00147 * 12 11 10 34 34 H 1.09002 * 109.47325 * 59.99867 * 12 11 10 35 35 H 0.96998 * 120.00025 * 180.02562 * 16 15 13 36 36 H 1.07991 * 120.09370 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1044 -0.0640 -0.0068 6 6 5.4788 -0.1806 -0.0017 7 6 6.2747 0.9669 0.0040 8 6 7.7473 0.8482 0.0090 9 8 8.4372 1.8479 0.0134 10 8 8.3249 -0.3688 0.0085 11 6 9.7763 -0.4096 0.0141 12 6 10.2455 -1.8658 0.0133 13 6 11.7520 -1.9081 0.0185 14 1 12.3180 -0.9884 0.0216 15 6 12.4075 -3.1211 0.0182 16 7 11.7183 -4.2412 0.0140 17 14 14.2748 -3.1735 0.0239 18 1 14.8089 -1.7879 0.0276 19 1 14.7462 -3.8895 1.2365 20 1 14.7537 -3.8850 -1.1884 21 6 5.6732 2.2265 0.0039 22 6 4.2951 2.3299 -0.0012 23 9 3.7101 3.5477 -0.0019 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.4887 -0.9513 -0.0116 30 1 5.9387 -1.1577 -0.0018 31 1 10.1573 0.0958 -0.8732 32 1 10.1504 0.0919 0.9066 33 1 9.8645 -2.3708 0.9008 34 1 9.8714 -2.3677 -0.8790 35 1 12.1795 -5.0945 0.0142 36 1 6.2830 3.1177 0.0079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869863677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = -161.523066 kcal Electronic energy + Delta-G solvation = -20756.814578 eV Core-core repulsion = 17120.557052 eV Total energy + Delta-G solvation = -3636.257526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.19397 -40.32354 -39.14117 -37.82828 -36.12684 -33.38713 -32.57723 -30.91312 -30.25275 -28.02728 -26.35204 -25.00660 -23.08656 -22.86288 -21.15887 -20.57399 -18.32605 -17.33602 -16.85166 -16.53820 -16.38822 -16.00321 -15.99483 -15.87172 -15.65670 -15.61837 -14.58592 -14.47194 -13.75243 -13.49970 -13.31566 -13.27099 -12.86341 -12.37936 -12.17168 -12.16836 -11.65984 -11.49231 -11.27174 -11.05146 -10.79717 -10.72222 -10.34796 -10.30858 -9.69370 -9.66879 -9.30628 -9.22813 -8.94030 -8.46104 -6.12042 -4.16312 0.39988 0.94342 2.54261 2.95608 3.17774 3.26953 3.34567 3.39547 3.50492 3.99148 4.29967 4.38961 4.56618 4.74860 4.85469 4.86126 4.93975 4.99227 5.01820 5.09495 5.24830 5.26992 5.51114 5.74019 5.83970 5.97475 6.06089 6.06174 6.08876 6.52878 6.60268 6.66480 6.87136 7.53223 7.59881 7.84235 8.09943 8.22288 8.89398 9.48280 10.99511 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030472 B = 0.002843 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.664437 B = 9848.096916 C =10735.701148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.098 4.098 5 C -0.082 4.082 6 C -0.068 4.068 7 C -0.089 4.089 8 C 0.501 3.499 9 O -0.510 6.510 10 O -0.349 6.349 11 C 0.075 3.925 12 C 0.024 3.976 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.092 4.092 22 C 0.089 3.911 23 F -0.135 7.135 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 9.883 -0.046 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.099 4.099 5 C -0.100 4.100 6 C -0.086 4.086 7 C -0.090 4.090 8 C 0.345 3.655 9 O -0.400 6.400 10 O -0.265 6.265 11 C 0.003 3.997 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.111 4.111 22 C 0.070 3.930 23 F -0.114 7.114 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.269 9.831 -0.045 24.342 hybrid contribution 0.848 0.469 0.004 0.969 sum -21.421 10.299 -0.041 23.768 Atomic orbital electron populations 1.22783 0.80236 1.03238 1.00213 1.87848 1.20215 1.26779 1.95535 1.21148 0.89113 0.85502 1.01541 1.19915 0.94949 0.92987 1.02068 1.20926 0.94210 0.97099 0.97766 1.21736 0.93261 0.99252 0.94396 1.19099 0.90732 0.93669 1.05531 1.20940 0.88519 0.82571 0.73439 1.90807 1.64946 1.38375 1.45910 1.86565 1.27562 1.29895 1.82480 1.23722 0.71757 1.03021 1.01182 1.19185 0.95900 0.87234 0.98970 1.21011 0.90463 0.92830 1.52120 0.92170 1.24984 0.98859 0.95473 0.94850 1.69979 1.35554 0.97448 1.49830 0.86414 0.84928 0.78260 0.77709 1.19587 1.20819 1.20824 1.21127 0.92575 0.98646 0.98725 1.17054 0.90494 0.79616 1.05870 1.91505 1.84301 1.41448 1.94115 0.93811 0.93804 0.89136 0.91205 0.91214 0.83102 0.82966 0.92079 0.92084 0.95248 0.95254 0.92739 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.34 9.17 -35.23 -0.32 -3.66 16 3 C 0.10 0.86 5.90 36.01 0.21 1.07 16 4 C -0.10 -1.02 5.89 -104.46 -0.62 -1.64 16 5 C -0.08 -0.88 9.36 -39.65 -0.37 -1.25 16 6 C -0.07 -0.84 9.62 -39.17 -0.38 -1.22 16 7 C -0.09 -1.27 5.87 -104.99 -0.62 -1.89 16 8 C 0.50 8.99 7.90 34.61 0.27 9.26 16 9 O -0.51 -10.22 16.14 -19.24 -0.31 -10.53 16 10 O -0.35 -6.89 9.47 -40.50 -0.38 -7.27 16 11 C 0.08 1.66 5.41 37.15 0.20 1.86 16 12 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 13 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.09 -1.17 9.57 -39.10 -0.37 -1.55 16 22 C 0.09 1.01 7.24 -39.48 -0.29 0.72 16 23 F -0.14 -1.48 16.79 2.25 0.04 -1.45 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.15 1.42 6.99 -52.49 -0.37 1.05 16 30 H 0.15 1.83 7.61 -52.49 -0.40 1.43 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.15 1.89 7.65 -52.49 -0.40 1.49 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -31.09 324.96 -6.28 -37.37 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.51 Total: -3.97 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.40 Total: -6.25 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.02 Total: -21.47 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.09 -6.28 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869863677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.149 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds