Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00053 * 2 1 4 4 C 1.53006 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47123 * 175.00063 * 4 3 2 6 6 S 1.81398 * 109.47221 * 295.00158 * 4 3 2 7 7 C 1.81395 * 102.99999 * 294.99609 * 6 4 3 8 8 C 1.52997 * 109.47459 * 179.97438 * 7 6 4 9 9 H 1.09006 * 109.47118 * 60.00336 * 8 7 6 10 10 O 1.42900 * 109.47208 * 300.00502 * 8 7 6 11 11 C 1.50694 * 109.47554 * 180.02562 * 8 7 6 12 12 H 1.08007 * 119.99895 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00079 * 180.02562 * 11 8 7 14 14 N 1.31506 * 120.00308 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99789 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47367 * 89.99958 * 15 13 11 17 17 H 1.48500 * 109.46856 * 209.99731 * 15 13 11 18 18 H 1.48493 * 109.47339 * 329.99589 * 15 13 11 19 19 C 1.50703 * 109.46861 * 55.00476 * 4 3 2 20 20 C 1.38235 * 120.00292 * 119.99838 * 19 4 3 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 4 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 299.97131 * 19 4 3 25 25 H 1.08993 * 109.47662 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47236 * 300.00520 * 1 2 3 27 27 H 1.09003 * 109.46881 * 59.99868 * 1 2 3 28 28 H 1.09000 * 109.47617 * 60.00130 * 3 2 1 29 29 H 1.08995 * 109.47469 * 299.99663 * 3 2 1 30 30 H 1.09003 * 109.47792 * 300.00485 * 7 6 4 31 31 H 1.09009 * 109.47404 * 59.99951 * 7 6 4 32 32 H 0.96698 * 113.99580 * 299.99898 * 10 8 7 33 33 H 0.96998 * 120.00859 * 179.97438 * 14 13 11 34 34 H 1.08001 * 119.99730 * 359.97438 * 20 19 4 35 35 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00455 * 0.02562 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 16 4.0805 0.4165 1.5510 7 6 3.6072 1.6419 2.8019 8 6 4.0053 1.1344 4.1893 9 1 5.0835 0.9783 4.2235 10 8 3.3365 -0.1002 4.4549 11 6 3.6115 2.1521 5.2286 12 1 3.1262 3.0695 4.9294 13 6 3.8717 1.9127 6.5612 14 7 4.4630 0.7960 6.9255 15 14 3.3829 3.1740 7.8495 16 1 2.0047 2.8890 8.3235 17 1 4.3250 3.1020 8.9951 18 1 3.4304 4.5336 7.2543 19 6 3.9723 0.3323 -1.1630 20 6 4.8115 0.8575 -2.1278 21 6 5.2125 0.0756 -3.1948 22 6 4.7751 -1.2318 -3.2966 23 6 3.9371 -1.7574 -2.3311 24 6 3.5342 -0.9747 -1.2652 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 4.1169 2.5838 2.5991 31 1 2.5289 1.7979 2.7681 32 1 2.3718 -0.0359 4.4405 33 1 4.6464 0.6277 7.8630 34 1 5.1538 1.8787 -2.0479 35 1 5.8678 0.4859 -3.9488 36 1 5.0849 -1.8414 -4.1326 37 1 3.5950 -2.7787 -2.4108 38 1 2.8785 -1.3851 -0.5114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901659986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = -73.401511 kcal Electronic energy + Delta-G solvation = -19705.582871 eV Core-core repulsion = 16639.359758 eV Total energy + Delta-G solvation = -3066.223113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35648 -37.64865 -35.81782 -33.33273 -32.15751 -30.78051 -29.81128 -28.89600 -26.36064 -25.27916 -23.52900 -22.45574 -21.35932 -20.60698 -17.20891 -16.94719 -16.66235 -15.86352 -15.53017 -15.17989 -14.92870 -14.64813 -14.34536 -14.09392 -13.97752 -13.47520 -13.18192 -12.99737 -12.75700 -12.53891 -12.07219 -11.90046 -11.43679 -11.35633 -11.14433 -10.98375 -10.89386 -10.78000 -10.63336 -10.09456 -9.65609 -9.37624 -9.04999 -8.77889 -8.62602 -8.55798 -8.19542 -6.95646 -6.05255 -4.25618 1.28872 1.53918 2.32011 3.24375 3.25123 3.32254 3.34502 3.75421 3.99098 4.35370 4.67618 4.83574 5.04245 5.06520 5.21596 5.24477 5.26931 5.33963 5.40598 5.47517 5.51243 5.63321 5.69742 5.77817 5.87833 6.03068 6.05057 6.22965 6.34941 6.52856 6.66243 6.68459 6.76885 7.10355 7.19400 7.63476 7.77101 8.07209 8.75969 9.35928 9.52704 10.98571 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.004026 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.714018 B = 6953.270119 C = 7316.841539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.072 3.928 4 C -0.033 4.033 5 H 0.098 0.902 6 S -0.218 6.218 7 C -0.107 4.107 8 C 0.248 3.752 9 H 0.064 0.936 10 O -0.554 6.554 11 C -0.572 4.572 12 H 0.056 0.944 13 C 0.081 3.919 14 N -0.855 5.855 15 Si 0.892 3.108 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.060 4.060 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.077 4.077 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -0.275 -18.774 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.007 4.007 4 C -0.161 4.161 5 H 0.116 0.884 6 S 0.013 5.987 7 C -0.255 4.255 8 C 0.189 3.811 9 H 0.081 0.919 10 O -0.356 6.356 11 C -0.611 4.611 12 H 0.075 0.925 13 C -0.126 4.126 14 N -0.490 5.490 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.061 4.061 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.096 4.096 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.188 0.812 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.274 -1.748 -18.404 18.775 hybrid contribution -1.591 2.547 0.533 3.050 sum -4.865 0.799 -17.871 18.539 Atomic orbital electron populations 1.22716 0.81664 1.02676 0.99596 1.87990 1.18888 1.26457 1.95246 1.22549 0.92212 0.85695 1.00203 1.22200 0.96214 1.01258 0.96464 0.88371 1.87377 1.79982 1.33179 0.98129 1.24652 1.02815 0.98793 0.99285 1.19113 0.94203 0.83269 0.84553 0.91876 1.86613 1.20581 1.34335 1.94048 1.21544 1.42915 1.04865 0.91823 0.92549 1.25031 0.93954 0.95031 0.98569 1.70077 1.38844 1.23313 1.16771 0.86621 0.78502 0.81731 0.81211 1.20464 1.20992 1.19824 1.19177 0.98023 0.94668 0.94204 1.21010 0.97691 0.99854 0.94484 1.21001 1.00849 0.94508 0.98382 1.21120 0.98349 0.95582 0.99050 1.21182 0.98657 0.99830 0.94989 1.21394 0.97705 0.92901 0.97558 0.89627 0.94032 0.94676 0.92664 0.93134 0.91005 0.91502 0.81179 0.92793 0.86360 0.86383 0.86542 0.86260 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.13 7.30 -35.23 -0.26 -5.39 16 3 C 0.07 0.97 5.46 37.16 0.20 1.17 16 4 C -0.03 -0.49 2.91 -27.88 -0.08 -0.57 16 5 H 0.10 1.32 7.88 -51.92 -0.41 0.91 16 6 S -0.22 -4.15 20.19 -107.50 -2.17 -6.32 16 7 C -0.11 -2.19 5.26 37.16 0.20 -2.00 16 8 C 0.25 6.32 2.88 -27.89 -0.08 6.24 16 9 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 10 O -0.55 -14.52 12.33 -35.23 -0.43 -14.96 16 11 C -0.57 -15.50 8.76 -34.44 -0.30 -15.80 16 12 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 13 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 14 N -0.86 -25.26 12.84 55.43 0.71 -24.55 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 C -0.06 -0.85 4.78 -104.62 -0.50 -1.35 16 20 C -0.11 -1.39 9.67 -39.59 -0.38 -1.77 16 21 C -0.13 -1.46 10.05 -39.59 -0.40 -1.85 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.08 -1.10 8.22 -39.58 -0.33 -1.42 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.76 6.72 -51.93 -0.35 0.41 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 31 H 0.07 1.30 7.02 -51.92 -0.36 0.94 16 32 H 0.34 8.08 9.04 45.56 0.41 8.50 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.12 1.27 7.95 -52.49 -0.42 0.85 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 2.22 6.17 -52.49 -0.32 1.90 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -31.17 331.84 -8.42 -39.59 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.80 Total: 8.25 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.45 Total: -17.50 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.71 Total: -24.55 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.69 Total: -20.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.17 Total: -6.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.17 -8.42 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901659986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.813 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds