Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00126 * 2 1 4 4 C 1.52997 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47153 * 184.99882 * 4 3 2 6 6 S 1.81399 * 109.47065 * 64.99927 * 4 3 2 7 7 C 1.81401 * 102.99839 * 65.00091 * 6 4 3 8 8 C 1.53000 * 109.47188 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47254 * 59.99418 * 8 7 6 10 10 O 1.42900 * 109.46748 * 299.99606 * 8 7 6 11 11 C 1.50700 * 109.47235 * 179.97438 * 8 7 6 12 12 H 1.07998 * 120.00232 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99939 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00084 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99788 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.47012 * 90.00211 * 15 13 11 17 17 H 1.48501 * 109.46913 * 209.99720 * 15 13 11 18 18 H 1.48495 * 109.47280 * 330.00131 * 15 13 11 19 19 C 1.50701 * 109.47212 * 304.99880 * 4 3 2 20 20 C 1.38236 * 119.99963 * 59.72884 * 19 4 3 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 4 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00128 * 19 4 3 25 25 H 1.09004 * 109.47556 * 300.00600 * 1 2 3 26 26 H 1.09004 * 109.46617 * 60.00247 * 1 2 3 27 27 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46996 * 59.99529 * 3 2 1 29 29 H 1.09001 * 109.46831 * 300.00046 * 3 2 1 30 30 H 1.09006 * 109.47291 * 299.99387 * 7 6 4 31 31 H 1.08991 * 109.47431 * 59.99890 * 7 6 4 32 32 H 0.96696 * 114.00730 * 299.99854 * 10 8 7 33 33 H 0.96994 * 120.00555 * 179.97438 * 14 13 11 34 34 H 1.08010 * 119.99941 * 359.97438 * 20 19 4 35 35 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 36 36 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 37 37 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.00084 * 359.97438 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1766 0.0902 6 16 4.0818 0.4161 -1.5490 7 6 3.6093 1.6411 -2.8007 8 6 4.0085 1.1331 -4.1876 9 1 3.4986 0.1913 -4.3903 10 8 5.4221 0.9285 -4.2312 11 6 3.6154 2.1505 -5.2276 12 1 3.1291 3.0675 -4.9293 13 6 3.8766 1.9106 -6.5600 14 7 4.4693 0.7942 -6.9233 15 14 3.3888 3.1714 -7.8491 16 1 4.5080 4.1248 -8.0575 17 1 3.0833 2.4797 -9.1272 18 1 2.1872 3.9119 -7.3875 19 6 3.9714 0.3328 1.1649 20 6 3.5283 -0.9723 1.2705 21 6 3.9314 -1.7549 2.3363 22 6 4.7709 -1.2299 3.3007 23 6 5.2098 0.0769 3.1979 24 6 4.8098 0.8583 2.1301 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 2.5309 1.7969 -2.7679 31 1 4.1188 2.5830 -2.5979 32 1 5.9406 1.7264 -4.0595 33 1 4.6527 0.6252 -7.8606 34 1 2.8694 -1.3814 0.5188 35 1 3.5881 -2.7758 2.4168 36 1 5.0837 -1.8404 4.1350 37 1 5.8654 0.4873 3.9517 38 1 5.1528 1.8793 2.0497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901659987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -73.517934 kcal Electronic energy + Delta-G solvation = -19652.066964 eV Core-core repulsion = 16585.838802 eV Total energy + Delta-G solvation = -3066.228161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35992 -37.65613 -35.82600 -33.33593 -32.16071 -30.78121 -29.82745 -28.88711 -26.37006 -25.28054 -23.53133 -22.45721 -21.37075 -20.59818 -17.21667 -16.95032 -16.67319 -15.86992 -15.53759 -15.17313 -14.93240 -14.65052 -14.31225 -14.22817 -13.85544 -13.51034 -13.18230 -13.00889 -12.77108 -12.54891 -12.08076 -11.83348 -11.49207 -11.33222 -11.17572 -10.97121 -10.90863 -10.77886 -10.63308 -10.10319 -9.65302 -9.38286 -9.05416 -8.77911 -8.62694 -8.56003 -8.20106 -6.95948 -6.05344 -4.25720 1.28989 1.53864 2.32060 3.24414 3.25092 3.32220 3.34383 3.74557 3.98968 4.35304 4.67511 4.83534 5.04013 5.06519 5.21333 5.24287 5.26498 5.33716 5.40208 5.47087 5.51105 5.63233 5.68967 5.77642 5.88215 6.02760 6.05078 6.22767 6.34033 6.52960 6.65949 6.68440 6.76602 7.10008 7.18334 7.63664 7.77137 8.07043 8.75895 9.35358 9.52405 10.98495 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.004056 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.572064 B = 6902.368499 C = 7423.033520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.071 3.929 4 C -0.033 4.033 5 H 0.099 0.901 6 S -0.218 6.218 7 C -0.107 4.107 8 C 0.248 3.752 9 H 0.064 0.936 10 O -0.555 6.555 11 C -0.572 4.572 12 H 0.056 0.944 13 C 0.081 3.919 14 N -0.855 5.855 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.059 4.059 20 C -0.078 4.078 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.110 4.110 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 -0.023 18.828 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.008 4.008 4 C -0.161 4.161 5 H 0.117 0.883 6 S 0.014 5.986 7 C -0.255 4.255 8 C 0.189 3.811 9 H 0.082 0.918 10 O -0.357 6.357 11 C -0.611 4.611 12 H 0.075 0.925 13 C -0.126 4.126 14 N -0.490 5.490 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.060 4.060 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.130 4.130 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.189 0.811 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.685 -1.912 18.370 18.833 hybrid contribution -0.998 2.835 -0.474 3.043 sum -4.683 0.923 17.896 18.522 Atomic orbital electron populations 1.22721 0.81630 1.02684 0.99649 1.87983 1.18939 1.26530 1.95262 1.22578 0.92279 0.85671 1.00273 1.22203 0.96099 1.01327 0.96485 0.88301 1.87387 1.79846 1.33021 0.98391 1.24646 1.03037 0.98580 0.99261 1.19120 0.80230 0.96839 0.84940 0.91810 1.86613 1.18636 1.36269 1.94207 1.21544 1.42776 1.05056 0.91773 0.92541 1.25035 0.93914 0.95160 0.98489 1.70081 1.38589 1.23558 1.16774 0.86618 0.78947 0.81452 0.81034 1.20444 1.20994 1.19836 1.19170 0.97995 0.94663 0.94172 1.21391 0.97744 0.92948 0.97577 1.21174 0.98674 0.99806 0.94990 1.21118 0.98334 0.95590 0.99065 1.21004 1.00812 0.94520 0.98373 1.21006 0.97693 0.99851 0.94441 0.94617 0.94003 0.89632 0.93089 0.92600 0.90990 0.91520 0.81149 0.92792 0.83897 0.86273 0.86540 0.86374 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.37 -5.18 7.28 -35.23 -0.26 -5.43 16 3 C 0.07 0.95 5.46 37.16 0.20 1.15 16 4 C -0.03 -0.48 2.91 -27.88 -0.08 -0.57 16 5 H 0.10 1.32 7.88 -51.92 -0.41 0.92 16 6 S -0.22 -4.15 20.19 -107.50 -2.17 -6.32 16 7 C -0.11 -2.19 5.27 37.16 0.20 -2.00 16 8 C 0.25 6.33 2.87 -27.88 -0.08 6.25 16 9 H 0.06 1.83 8.14 -51.93 -0.42 1.41 16 10 O -0.56 -14.57 12.32 -35.23 -0.43 -15.00 16 11 C -0.57 -15.51 8.76 -34.44 -0.30 -15.81 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 14 N -0.85 -25.27 12.84 55.43 0.71 -24.56 16 15 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.06 -0.84 4.78 -104.63 -0.50 -1.34 16 20 C -0.08 -1.11 8.23 -39.58 -0.33 -1.44 16 21 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 22 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 23 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.11 -1.38 9.67 -39.59 -0.38 -1.76 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 30 H 0.07 1.42 7.02 -51.92 -0.36 1.06 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.34 8.04 9.04 45.56 0.41 8.45 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.14 2.20 6.14 -52.48 -0.32 1.88 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.27 7.95 -52.49 -0.42 0.85 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -31.26 331.82 -8.42 -39.68 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.80 Total: 8.26 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.45 Total: -17.51 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.71 Total: -24.56 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.69 Total: -20.43 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.17 Total: -6.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.26 -8.42 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901659987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.837 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds