Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35695 * 117.00592 * 2 1 4 4 C 1.39123 * 119.87905 * 0.29103 * 3 2 1 5 5 C 1.37575 * 120.16736 * 180.25682 * 4 3 2 6 6 C 1.39877 * 119.92849 * 359.46966 * 5 4 3 7 7 C 1.47313 * 120.11911 * 180.23067 * 6 5 4 8 8 O 1.21522 * 120.00270 * 180.02562 * 7 6 5 9 9 O 1.34759 * 119.99703 * 0.02562 * 7 6 5 10 10 C 1.45201 * 116.99914 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47040 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46712 * 180.02562 * 11 10 9 13 13 C 1.50711 * 109.46569 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00110 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99564 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99875 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99560 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47253 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46850 * 119.99579 * 17 15 13 20 20 H 1.48499 * 109.46655 * 239.99313 * 17 15 13 21 21 C 1.40055 * 119.76732 * 0.25910 * 6 5 4 22 22 F 1.35096 * 120.08337 * 180.02562 * 21 6 5 23 23 C 1.38037 * 119.83232 * 359.97438 * 21 6 5 24 24 H 1.08997 * 109.46719 * 60.00087 * 1 2 3 25 25 H 1.08994 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47309 * 300.00360 * 1 2 3 27 27 H 1.08002 * 119.92148 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.04039 * 179.75434 * 5 4 3 29 29 H 1.08991 * 109.47530 * 300.00208 * 10 9 7 30 30 H 1.09000 * 109.46834 * 60.00338 * 10 9 7 31 31 H 1.09000 * 109.46925 * 300.00149 * 11 10 9 32 32 H 1.09000 * 109.47080 * 60.00428 * 11 10 9 33 33 H 1.09000 * 109.47204 * 299.99558 * 12 11 10 34 34 H 1.08997 * 109.47637 * 60.00604 * 12 11 10 35 35 H 0.97000 * 119.99753 * 180.02562 * 16 15 13 36 36 H 1.07994 * 119.96694 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2851 2.3742 0.0061 5 6 1.9036 3.6031 0.0008 6 6 3.3002 3.6815 0.0005 7 6 3.9668 4.9952 -0.0001 8 8 5.1803 5.0608 -0.0008 9 8 3.2310 6.1241 0.0003 10 6 3.9549 7.3828 0.0003 11 6 2.9586 8.5441 0.0014 12 6 3.7215 9.8703 0.0008 13 6 2.7402 11.0142 0.0025 14 1 1.6788 10.8151 0.0035 15 6 3.1977 12.3149 0.0018 16 7 4.4903 12.5573 0.0001 17 14 1.9814 13.7327 0.0032 18 1 0.5965 13.1968 0.0044 19 1 2.1919 14.5642 1.2154 20 1 2.1890 14.5640 -1.2097 21 6 4.0625 2.5066 0.0000 22 9 5.4118 2.5749 0.0002 23 6 3.4318 1.2788 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2068 2.3141 0.0105 28 1 1.3115 4.5064 0.0016 29 1 4.5817 7.4415 0.8901 30 1 4.5811 7.4417 -0.8898 31 1 2.3315 8.4856 -0.8882 32 1 2.3327 8.4850 0.8918 33 1 4.3489 9.9291 0.8902 34 1 4.3471 9.9293 -0.8898 35 1 4.8121 13.4723 -0.0001 36 1 4.0176 0.3715 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = -155.624463 kcal Electronic energy + Delta-G solvation = -20820.469038 eV Core-core repulsion = 17184.467295 eV Total energy + Delta-G solvation = -3636.001743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.15897 -40.73139 -39.95538 -37.58446 -36.31136 -33.98859 -31.94431 -31.47204 -30.60366 -28.07698 -27.03195 -24.35857 -23.43869 -22.67913 -20.95455 -20.33617 -18.94775 -17.90816 -17.26293 -16.65547 -16.55131 -16.33197 -16.21334 -16.00056 -15.60239 -15.15762 -14.53785 -14.46660 -14.00243 -13.72514 -13.18589 -12.86119 -12.83675 -12.66528 -12.18512 -12.15454 -11.86471 -11.51559 -11.44554 -10.98876 -10.65441 -10.64405 -10.38288 -10.37511 -9.72500 -9.52043 -9.36224 -9.15236 -8.83296 -8.39351 -6.03769 -4.06835 0.34126 0.73835 2.43076 2.53227 2.80399 3.29764 3.31119 3.37169 3.41230 3.90405 4.20344 4.39973 4.42762 4.57908 4.64767 4.67993 4.76427 4.91962 4.99562 5.32283 5.46370 5.56005 5.59145 5.64352 5.70975 5.74667 6.01986 6.12326 6.46716 6.53823 6.72233 6.82955 6.97659 7.60538 7.71409 7.90423 7.94815 8.35525 8.99699 9.57477 11.07744 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.002776 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.885014 B =10085.663009 C =10994.496395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.189 3.811 4 C -0.234 4.234 5 C 0.010 3.990 6 C -0.198 4.198 7 C 0.505 3.495 8 O -0.500 6.500 9 O -0.354 6.354 10 C 0.069 3.931 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.205 3.795 22 F -0.107 7.107 23 C -0.207 4.207 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.144 0.856 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -26.233 0.003 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.142 3.858 4 C -0.253 4.253 5 C -0.008 4.008 6 C -0.200 4.200 7 C 0.349 3.651 8 O -0.389 6.389 9 O -0.271 6.271 10 C -0.003 4.003 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.185 3.815 22 F -0.085 7.085 23 C -0.227 4.227 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.173 0.827 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.045 -26.214 0.002 27.421 hybrid contribution -0.394 1.048 -0.002 1.119 sum -8.438 -25.166 0.000 26.543 Atomic orbital electron populations 1.23218 0.77241 1.04618 1.02114 1.86049 1.22318 1.26378 1.87309 1.18891 0.91357 0.84629 0.90930 1.21305 1.01037 0.91577 1.11391 1.21232 0.92139 0.98578 0.88832 1.19206 0.94364 0.90141 1.16276 1.20639 0.85657 0.85007 0.73817 1.90899 1.14599 1.88057 1.45370 1.86512 1.41703 1.15320 1.83518 1.23545 0.95857 0.78571 1.02365 1.21768 0.97778 0.93079 1.01946 1.19063 0.95658 0.88933 0.97749 1.21205 0.93064 0.90724 1.50899 0.92379 1.25040 0.95199 0.99070 0.95225 1.69977 1.12619 1.20135 1.50592 0.86490 0.81370 0.82268 0.77606 1.19676 1.20973 1.20979 1.17222 0.77444 0.92006 0.94847 1.91632 1.27570 1.96970 1.92320 1.20131 0.92526 0.97413 1.12583 0.91922 0.87703 0.91913 0.83828 0.82706 0.91364 0.91359 0.92120 0.92113 0.96188 0.96185 0.92931 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.30 10.48 -18.79 -0.20 -2.50 16 3 C 0.19 1.63 6.69 -39.03 -0.26 1.37 16 4 C -0.23 -1.83 9.01 -39.49 -0.36 -2.19 16 5 C 0.01 0.10 9.60 -39.21 -0.38 -0.27 16 6 C -0.20 -2.59 5.88 -104.91 -0.62 -3.21 16 7 C 0.50 8.41 7.88 34.42 0.27 8.68 16 8 O -0.50 -9.81 15.12 -19.28 -0.29 -10.10 16 9 O -0.35 -5.99 9.46 -40.65 -0.38 -6.38 16 10 C 0.07 1.30 5.48 37.16 0.20 1.51 16 11 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.64 9.11 -34.43 -0.31 -14.95 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.21 2.56 7.28 -38.97 -0.28 2.27 16 22 F -0.11 -1.56 15.54 2.25 0.03 -1.52 16 23 C -0.21 -2.02 9.95 -39.43 -0.39 -2.42 16 24 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 25 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.17 7.64 -51.93 -0.40 -0.22 16 27 H 0.14 0.71 6.27 -52.49 -0.33 0.38 16 28 H 0.16 1.38 7.60 -52.49 -0.40 0.98 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -33.06 321.67 -6.24 -39.30 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -4.45 Total: -5.43 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.52 Total: -8.55 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.87 Total: -18.98 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.06 -6.24 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.325 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds