Wall clock time and date at job start Tue Mar 31 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35748 * 117.00261 * 2 1 4 4 C 1.38947 * 119.91522 * 359.72222 * 3 2 1 5 5 C 1.37706 * 120.12517 * 180.27686 * 4 3 2 6 6 C 1.39784 * 119.94357 * 0.02562 * 5 4 3 7 7 C 1.47466 * 120.08119 * 179.97438 * 6 5 4 8 8 O 1.21508 * 119.99816 * 179.97438 * 7 6 5 9 9 O 1.34750 * 120.00327 * 359.97438 * 7 6 5 10 10 C 1.45204 * 116.99740 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46854 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47218 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46983 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00233 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99935 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99826 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00170 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46997 * 60.00128 * 17 15 13 19 19 H 1.48501 * 109.47323 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47304 * 300.00101 * 17 15 13 21 21 C 1.39789 * 119.82943 * 359.97438 * 6 5 4 22 22 C 1.37873 * 119.88011 * 359.97438 * 21 6 5 23 23 F 1.35099 * 119.97648 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.46957 * 300.00535 * 1 2 3 25 25 H 1.09002 * 109.47130 * 59.99959 * 1 2 3 26 26 H 1.09002 * 109.47593 * 180.02562 * 1 2 3 27 27 H 1.08009 * 119.93474 * 0.28008 * 4 3 2 28 28 H 1.07995 * 120.02712 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47291 * 300.00309 * 10 9 7 30 30 H 1.09003 * 109.47147 * 60.00813 * 10 9 7 31 31 H 1.08999 * 109.46892 * 300.00471 * 11 10 9 32 32 H 1.09000 * 109.47063 * 59.99759 * 11 10 9 33 33 H 1.08998 * 109.46959 * 300.00220 * 12 11 10 34 34 H 1.08994 * 109.46794 * 59.99969 * 12 11 10 35 35 H 0.96999 * 120.00233 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.06104 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2869 2.3737 -0.0058 5 6 1.9077 3.6029 -0.0116 6 6 3.3034 3.6797 -0.0122 7 6 3.9713 4.9944 -0.0189 8 8 5.1846 5.0595 -0.0189 9 8 3.2361 6.1237 -0.0251 10 6 3.9607 7.3820 -0.0310 11 6 2.9651 8.5438 -0.0368 12 6 3.7286 9.8697 -0.0437 13 6 2.7480 11.0139 -0.0488 14 1 1.6864 10.8153 -0.0469 15 6 3.2060 12.3144 -0.0548 16 7 4.4988 12.5562 -0.0556 17 14 1.9905 13.7328 -0.0605 18 1 1.1376 13.6585 1.1528 19 1 2.7315 15.0197 -0.0672 20 1 1.1362 13.6478 -1.2721 21 6 4.0643 2.5071 -0.0063 22 6 3.4354 1.2802 0.0006 23 9 4.1689 0.1457 0.0068 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2085 2.3144 -0.0058 28 1 1.3167 4.5068 -0.0166 29 1 4.5868 7.4449 0.8591 30 1 4.5878 7.4360 -0.9209 31 1 2.3388 8.4809 -0.9267 32 1 2.3383 8.4896 0.8532 33 1 4.3552 9.9326 0.8460 34 1 4.3551 9.9235 -0.9339 35 1 4.8211 13.4710 -0.0602 36 1 5.1430 2.5621 -0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:56 Heat of formation + Delta-G solvation = -156.340219 kcal Electronic energy + Delta-G solvation = -20655.751625 eV Core-core repulsion = 17019.718844 eV Total energy + Delta-G solvation = -3636.032781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.10631 -40.75254 -39.96843 -37.75464 -36.37895 -34.01645 -31.82437 -31.23275 -30.91104 -28.14086 -27.03777 -24.43834 -23.24328 -22.89052 -20.97923 -20.36642 -18.88237 -18.09339 -17.44314 -16.66034 -16.65610 -16.27744 -16.16703 -15.91422 -15.44519 -15.19344 -14.71670 -14.49319 -14.11804 -13.79565 -13.14484 -12.97546 -12.80694 -12.35943 -12.19393 -12.18613 -11.91460 -11.59777 -11.56903 -10.97170 -10.74034 -10.66574 -10.48527 -10.41889 -9.75041 -9.53776 -9.44978 -9.19776 -8.71454 -8.40052 -6.04907 -4.08214 0.30835 0.70358 2.34514 2.55410 2.73752 3.31101 3.31147 3.35739 3.37932 3.78370 4.21380 4.40949 4.43621 4.59143 4.65463 4.69146 4.72214 4.98353 5.05455 5.30953 5.35404 5.53395 5.55282 5.60485 5.66718 5.82151 5.98831 6.07773 6.42531 6.51002 6.70751 6.78753 6.95091 7.58188 7.69305 7.83595 7.93129 8.33904 8.97811 9.56061 11.06496 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034868 B = 0.002597 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.839856 B =10779.112626 C =11550.900882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.128 3.872 4 C -0.197 4.197 5 C -0.026 4.026 6 C -0.131 4.131 7 C 0.507 3.493 8 O -0.507 6.507 9 O -0.353 6.353 10 C 0.069 3.931 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.053 4.053 22 C 0.057 3.943 23 F -0.128 7.128 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -24.940 0.120 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.080 3.920 4 C -0.216 4.216 5 C -0.044 4.044 6 C -0.133 4.133 7 C 0.352 3.648 8 O -0.396 6.396 9 O -0.269 6.269 10 C -0.004 4.004 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.072 4.072 22 C 0.037 3.963 23 F -0.106 7.106 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.647 -24.963 0.120 26.109 hybrid contribution -0.538 0.834 -0.001 0.993 sum -8.185 -24.129 0.118 25.480 Atomic orbital electron populations 1.23225 0.77269 1.04687 1.02016 1.86114 1.22308 1.25695 1.87674 1.19338 0.90841 0.85840 0.95947 1.21161 1.00850 0.90950 1.08629 1.21429 0.93222 0.98392 0.91404 1.18880 0.93563 0.90456 1.10376 1.20786 0.85602 0.85107 0.73333 1.90850 1.14866 1.88152 1.45778 1.86526 1.41733 1.15389 1.83259 1.23568 0.95859 0.78550 1.02401 1.21774 0.97799 0.93072 1.01986 1.19047 0.95631 0.88898 0.97733 1.21126 0.93001 0.90748 1.51220 0.92481 1.25032 0.95202 0.99045 0.95179 1.69952 1.12622 1.20383 1.50369 0.86602 0.81057 0.81364 0.78650 1.20180 1.21258 1.20187 1.21078 1.01954 0.88751 0.95391 1.16623 0.85857 0.82856 1.10962 1.91530 1.76487 1.48166 1.94435 0.91946 0.91937 0.87644 0.83463 0.82926 0.91298 0.91292 0.92095 0.92091 0.96201 0.96197 0.92803 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.71 10.35 -18.95 -0.20 -2.91 16 3 C 0.13 1.22 6.70 -38.97 -0.26 0.96 16 4 C -0.20 -1.57 9.01 -39.51 -0.36 -1.92 16 5 C -0.03 -0.25 9.61 -39.20 -0.38 -0.63 16 6 C -0.13 -1.58 5.87 -104.98 -0.62 -2.20 16 7 C 0.51 7.77 7.89 34.49 0.27 8.04 16 8 O -0.51 -9.06 16.13 -19.27 -0.31 -9.37 16 9 O -0.35 -5.66 9.46 -40.63 -0.38 -6.04 16 10 C 0.07 1.24 5.48 37.16 0.20 1.44 16 11 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 12 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.05 -0.60 9.56 -39.14 -0.37 -0.97 16 22 C 0.06 0.63 7.30 -39.36 -0.29 0.34 16 23 F -0.13 -1.52 17.10 2.25 0.04 -1.48 16 24 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16 25 H 0.06 0.20 7.64 -51.93 -0.40 -0.19 16 26 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.15 0.73 6.27 -52.48 -0.33 0.40 16 28 H 0.15 1.30 7.60 -52.49 -0.40 0.91 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.16 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -32.19 323.34 -6.19 -38.38 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -4.42 Total: -4.82 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.50 Total: -9.05 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.89 Total: -18.32 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.19 -6.19 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.957 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds