Wall clock time and date at job start Tue Mar 31 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 O 1.42904 * 109.47171 * 240.00133 * 2 1 3 5 5 C 1.35954 * 116.99748 * 85.00353 * 4 2 1 6 6 C 1.38662 * 120.06562 * 354.51150 * 5 4 2 7 7 C 1.38179 * 119.97181 * 179.71902 * 6 5 4 8 8 C 1.38263 * 120.09295 * 0.55422 * 7 6 5 9 9 C 1.38255 * 120.12834 * 359.72575 * 8 7 6 10 10 C 1.38334 * 120.02647 * 359.97438 * 9 8 7 11 11 F 1.35098 * 120.04922 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47442 * 120.00058 * 2 1 3 13 13 O 1.20824 * 120.00038 * 120.00183 * 12 2 1 14 14 O 1.34223 * 119.99808 * 300.28137 * 12 2 1 15 15 C 1.45209 * 116.99795 * 179.72256 * 14 12 2 16 16 C 1.52998 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46874 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00078 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99764 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99754 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47212 * 89.99984 * 21 19 17 23 23 H 1.48503 * 109.47166 * 210.00051 * 21 19 17 24 24 H 1.48497 * 109.47283 * 329.99880 * 21 19 17 25 25 H 1.08995 * 109.47255 * 60.00193 * 1 2 3 26 26 H 1.09010 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47440 * 299.99573 * 1 2 3 28 28 H 1.07999 * 120.01213 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.95542 * 180.27228 * 7 6 5 30 30 H 1.08001 * 119.93915 * 179.73979 * 8 7 6 31 31 H 1.07997 * 119.99147 * 179.97438 * 9 8 7 32 32 H 1.08992 * 109.46914 * 299.99994 * 15 14 12 33 33 H 1.08999 * 109.46844 * 59.99831 * 15 14 12 34 34 H 1.08992 * 109.47789 * 299.99981 * 16 15 14 35 35 H 1.08999 * 109.47113 * 60.00518 * 16 15 14 36 36 H 0.97008 * 119.99551 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1126 0.0630 -2.3046 6 6 1.6597 1.3734 -2.3286 7 6 1.7740 2.1221 -3.4843 8 6 2.3289 1.5630 -4.6206 9 6 2.7764 0.2550 -4.6028 10 6 2.6702 -0.4973 -3.4468 11 9 3.1078 -1.7753 -3.4288 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6927 1.1195 14 8 1.7035 -0.2551 2.4495 15 6 2.2180 -0.9928 3.5896 16 6 1.7421 -0.3290 4.8833 17 6 2.2755 -1.0949 6.0665 18 1 2.8926 -1.9676 5.9113 19 6 1.9757 -0.6816 7.3473 20 7 1.2239 0.3808 7.5363 21 14 2.6375 -1.6306 8.8139 22 1 3.9563 -1.0741 9.2094 23 1 1.6888 -1.5107 9.9500 24 1 2.7935 -3.0613 8.4482 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.2217 1.8098 -1.4432 29 1 1.4252 3.1441 -3.5014 30 1 2.4131 2.1492 -5.5237 31 1 3.2091 -0.1796 -5.4917 32 1 1.8539 -2.0194 3.5523 33 1 3.3076 -0.9924 3.5609 34 1 2.1064 0.6976 4.9204 35 1 0.6525 -0.3291 4.9122 36 1 1.0127 0.6713 8.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914656405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:05 Heat of formation + Delta-G solvation = -148.621273 kcal Electronic energy + Delta-G solvation = -21176.933951 eV Core-core repulsion = 17541.235888 eV Total energy + Delta-G solvation = -3635.698062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.93608 -40.84343 -39.71536 -37.81700 -36.10326 -33.45142 -32.49708 -31.02216 -30.28880 -29.83163 -25.69194 -24.67929 -23.37030 -22.72557 -21.14995 -20.46515 -18.91912 -17.55675 -17.36577 -16.83550 -16.40813 -16.15833 -15.96923 -15.81615 -15.27897 -14.95558 -14.69478 -14.56739 -13.84017 -13.47483 -13.20003 -12.99639 -12.58823 -12.53102 -12.39404 -12.23751 -11.89957 -11.49358 -11.34574 -11.23189 -11.09346 -10.80628 -10.71891 -10.21793 -9.73111 -9.68130 -9.35002 -9.28142 -8.52478 -8.48302 -6.14495 -4.18997 0.77547 0.90283 2.17439 2.38485 3.23401 3.26580 3.32008 3.34549 3.40479 3.94998 4.33953 4.38555 4.41756 4.53533 4.61716 4.84236 4.87410 4.88849 5.12534 5.22404 5.39075 5.43589 5.62484 5.70121 5.82274 5.89223 6.00389 6.01974 6.02482 6.28912 6.55897 6.83057 6.94178 7.49725 7.55857 7.81513 8.06188 8.19056 8.86383 9.45771 10.96974 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040212 B = 0.002847 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.144630 B = 9833.151372 C =10253.191632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.112 0.888 4 O -0.281 6.281 5 C 0.101 3.899 6 C -0.186 4.186 7 C -0.088 4.088 8 C -0.131 4.131 9 C -0.117 4.117 10 C 0.072 3.928 11 F -0.130 7.130 12 C 0.459 3.541 13 O -0.492 6.492 14 O -0.350 6.350 15 C 0.076 3.924 16 C 0.025 3.975 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 5.282 -23.858 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.129 0.871 4 O -0.194 6.194 5 C 0.055 3.945 6 C -0.204 4.204 7 C -0.106 4.106 8 C -0.149 4.149 9 C -0.136 4.136 10 C 0.052 3.948 11 F -0.108 7.108 12 C 0.299 3.701 13 O -0.379 6.379 14 O -0.267 6.267 15 C 0.003 3.997 16 C -0.012 4.012 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.120 4.816 -23.642 24.154 hybrid contribution 0.459 -0.624 0.964 1.237 sum -0.661 4.193 -22.678 23.072 Atomic orbital electron populations 1.22338 0.91345 1.04858 1.04661 1.21757 0.96417 0.96646 0.81716 0.87070 1.86235 1.81122 1.36583 1.15502 1.19076 0.97628 0.91417 0.86382 1.21314 1.05251 0.92977 1.00893 1.21043 0.97627 0.99984 0.91975 1.20953 1.00361 0.94491 0.99115 1.21046 1.01229 0.94816 0.96504 1.17035 1.03492 0.80963 0.93324 1.91533 1.87346 1.34996 1.96933 1.22740 0.78537 0.83319 0.85495 1.90687 1.34640 1.25143 1.87413 1.86487 1.69525 1.56385 1.14313 1.23760 0.98390 0.95338 0.82166 1.19183 0.97916 0.96873 0.87189 1.20972 1.32585 1.12737 0.90255 0.92199 1.24978 0.94920 0.95118 0.99092 1.69972 1.36737 1.24099 1.22039 0.86459 0.78750 0.80296 0.81745 1.20443 1.21014 1.19689 0.90518 0.90555 0.88595 0.83922 0.84817 0.84789 0.84003 0.92015 0.92071 0.95272 0.95229 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.10 37.16 0.34 -1.50 16 2 C 0.09 1.21 2.75 -27.88 -0.08 1.14 16 3 H 0.11 1.16 6.31 -51.93 -0.33 0.84 16 4 O -0.28 -4.18 9.20 -39.55 -0.36 -4.54 16 5 C 0.10 1.23 6.61 -39.18 -0.26 0.98 16 6 C -0.19 -1.67 8.25 -39.45 -0.33 -1.99 16 7 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 8 C -0.13 -0.89 10.04 -39.57 -0.40 -1.29 16 9 C -0.12 -1.00 10.02 -39.54 -0.40 -1.40 16 10 C 0.07 0.86 7.31 -39.30 -0.29 0.57 16 11 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 12 C 0.46 8.21 7.33 36.01 0.26 8.47 16 13 O -0.49 -10.49 16.25 -25.48 -0.41 -10.90 16 14 O -0.35 -6.78 10.11 -39.24 -0.40 -7.17 16 15 C 0.08 1.66 5.40 37.16 0.20 1.87 16 16 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 17 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 21 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.08 0.62 6.91 -51.93 -0.36 0.26 16 26 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.14 1.03 5.43 -52.49 -0.28 0.75 16 29 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -32.86 321.27 -6.79 -39.65 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.32 Total: -3.95 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.90 Total: -7.06 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.32 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -1.17 Total: -22.62 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.86 -6.79 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914656405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.970 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds