Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21325 * 120.00017 * 2 1 4 4 C 1.46601 * 120.00374 * 179.97438 * 2 1 3 5 5 C 1.40291 * 120.24476 * 88.67905 * 4 2 1 6 6 F 1.35101 * 120.09756 * 0.02562 * 5 4 2 7 7 C 1.38047 * 119.80411 * 179.97438 * 5 4 2 8 8 C 1.38464 * 120.30881 * 359.97438 * 7 5 4 9 9 C 1.38150 * 120.50561 * 0.02562 * 8 7 5 10 10 C 1.38591 * 120.18579 * 359.97438 * 9 8 7 11 11 O 1.35604 * 120.15872 * 180.27398 * 10 9 8 12 12 C 1.42904 * 116.99598 * 359.73034 * 11 10 9 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 10 14 14 O 1.42894 * 109.47386 * 64.99647 * 13 12 11 15 15 C 1.42894 * 114.00377 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47230 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00270 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00079 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99649 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46916 * 89.99988 * 20 18 16 22 22 H 1.48499 * 109.46897 * 209.99839 * 20 18 16 23 23 H 1.48497 * 109.46983 * 330.00161 * 20 18 16 24 24 H 1.08997 * 109.46995 * 185.18345 * 1 2 3 25 25 H 1.09005 * 109.47113 * 305.18471 * 1 2 3 26 26 H 1.09006 * 109.47275 * 65.18402 * 1 2 3 27 27 H 1.07997 * 119.84612 * 180.02562 * 7 5 4 28 28 H 1.08002 * 119.75110 * 180.02562 * 8 7 5 29 29 H 1.08005 * 119.90808 * 180.02562 * 9 8 7 30 30 H 1.08995 * 109.47592 * 299.99616 * 12 11 10 31 31 H 1.09006 * 109.46946 * 59.99781 * 12 11 10 32 32 H 1.09000 * 109.47622 * 185.00533 * 13 12 11 33 33 H 1.09006 * 109.46794 * 304.99820 * 13 12 11 34 34 H 1.08992 * 109.47231 * 300.00676 * 15 14 13 35 35 H 1.09007 * 109.46703 * 60.00735 * 15 14 13 36 36 H 0.97010 * 119.99577 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2696 0.0006 5 6 2.5692 -1.8960 -1.2108 6 9 2.2120 -1.3309 -2.3848 7 6 3.2602 -3.0911 -1.1996 8 6 3.6299 -3.6733 0.0010 9 6 3.3124 -3.0675 1.2013 10 6 2.6192 -1.8675 1.2143 11 8 2.3127 -1.2705 2.3927 12 6 2.7302 -1.9374 3.5856 13 6 2.2991 -1.1195 4.8047 14 8 0.8723 -1.0814 4.8724 15 6 0.3627 -0.3385 5.9816 16 6 -1.1439 -0.3653 5.9546 17 1 -1.6605 -0.8969 5.1691 18 6 -1.8627 0.2888 6.9326 19 7 -1.2336 0.9366 7.8887 20 14 -3.7301 0.2550 6.8995 21 1 -4.2178 -0.9154 7.6727 22 1 -4.2586 1.5035 7.5052 23 1 -4.1984 0.1497 5.4942 24 1 -0.3633 -1.0234 0.0928 25 1 -0.3633 0.5922 0.8399 26 1 -0.3634 0.4313 -0.9328 27 1 3.5143 -3.5737 -2.1318 28 1 4.1707 -4.6082 -0.0008 29 1 3.6059 -3.5299 2.1322 30 1 2.2711 -2.9249 3.6296 31 1 3.8153 -2.0409 3.5832 32 1 2.6937 -1.5809 5.7099 33 1 2.6859 -0.1042 4.7162 34 1 0.7171 -0.7841 6.9110 35 1 0.7092 0.6931 5.9180 36 1 -1.7393 1.3965 8.5770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918995794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -143.178290 kcal Electronic energy + Delta-G solvation = -21514.164964 eV Core-core repulsion = 17878.702927 eV Total energy + Delta-G solvation = -3635.462037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.22461 -40.54303 -38.86596 -37.55145 -36.49898 -32.83066 -32.06412 -30.53802 -29.81387 -29.12091 -26.97632 -24.15298 -23.49684 -22.38684 -21.67860 -20.25160 -18.59800 -17.14072 -16.77115 -16.46808 -16.40018 -16.35776 -15.91775 -15.09575 -15.01070 -14.80726 -14.74812 -14.42369 -14.38342 -14.14976 -13.32645 -12.90986 -12.48761 -12.43364 -12.24916 -12.08189 -11.89381 -11.73646 -11.42536 -11.18351 -10.88236 -10.80163 -10.64937 -10.09335 -9.78747 -9.17137 -9.11635 -8.92439 -8.51013 -8.25658 -6.14627 -4.16608 0.70261 1.00103 1.86415 2.88443 3.21516 3.28296 3.33588 3.38790 3.87195 4.09419 4.28008 4.48790 4.62806 4.68810 4.77657 4.97364 5.05005 5.12405 5.22170 5.24706 5.42684 5.50714 5.59399 5.71241 5.71937 5.79371 5.87046 6.00757 6.00996 6.08897 6.40467 7.00778 7.18282 7.35933 7.42342 7.74614 8.08698 8.47110 8.95327 9.48300 10.96934 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.003863 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.436362 B = 7246.971183 C = 7947.010950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.420 3.580 3 O -0.444 6.444 4 C -0.228 4.228 5 C 0.165 3.835 6 F -0.129 7.129 7 C -0.199 4.199 8 C -0.036 4.036 9 C -0.223 4.223 10 C 0.199 3.801 11 O -0.290 6.290 12 C 0.063 3.937 13 C 0.061 3.939 14 O -0.390 6.390 15 C 0.194 3.806 16 C -0.516 4.516 17 H 0.067 0.933 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 -9.953 -15.693 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.295 3.705 3 O -0.316 6.316 4 C -0.231 4.231 5 C 0.146 3.854 6 F -0.108 7.108 7 C -0.218 4.218 8 C -0.054 4.054 9 C -0.242 4.242 10 C 0.151 3.849 11 O -0.202 6.202 12 C -0.011 4.011 13 C -0.017 4.017 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.554 4.554 17 H 0.085 0.915 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.013 -9.142 -15.641 20.700 hybrid contribution -0.704 -0.046 0.259 0.751 sum 9.309 -9.188 -15.382 20.191 Atomic orbital electron populations 1.22213 0.92561 1.05327 1.05051 1.22138 0.92017 0.86662 0.69707 1.90570 1.72299 1.34032 1.34668 1.19698 1.10784 1.01485 0.91090 1.17228 0.96727 0.92114 0.79353 1.91528 1.89696 1.84654 1.44893 1.20898 1.04682 0.96063 1.00126 1.20883 0.95295 0.98578 0.90669 1.21314 1.05795 0.96861 1.00190 1.18677 0.90739 0.90285 0.85209 1.86197 1.74044 1.48005 1.11915 1.23137 0.98760 0.97258 0.81949 1.22291 0.86493 0.99045 0.93826 1.87908 1.15886 1.75495 1.51729 1.20247 0.94681 0.90098 0.82930 1.21029 0.90074 1.33060 1.11225 0.91502 1.24947 0.99474 0.94981 0.95031 1.69961 1.35967 1.33861 1.13935 0.86330 0.84174 0.77504 0.78465 1.20442 1.21028 1.19567 0.89871 0.87739 0.88726 0.84171 0.84354 0.84057 0.90610 0.90740 0.91765 0.93098 0.97596 0.97478 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 10.32 36.00 0.37 -2.17 16 2 C 0.42 6.67 5.85 -30.94 -0.18 6.49 16 3 O -0.44 -8.41 17.86 5.52 0.10 -8.31 16 4 C -0.23 -3.26 5.47 -104.90 -0.57 -3.83 16 5 C 0.17 2.02 7.29 -38.88 -0.28 1.74 16 6 F -0.13 -1.62 16.84 2.25 0.04 -1.58 16 7 C -0.20 -1.86 10.00 -39.57 -0.40 -2.25 16 8 C -0.04 -0.30 10.02 -39.53 -0.40 -0.70 16 9 C -0.22 -2.31 9.02 -39.48 -0.36 -2.66 16 10 C 0.20 2.77 6.71 -38.59 -0.26 2.51 16 11 O -0.29 -4.74 9.55 -23.36 -0.22 -4.96 16 12 C 0.06 0.87 5.12 37.16 0.19 1.06 16 13 C 0.06 1.07 6.32 37.16 0.23 1.30 16 14 O -0.39 -9.20 10.29 -40.08 -0.41 -9.61 16 15 C 0.19 5.26 5.69 36.01 0.20 5.47 16 16 C -0.52 -15.05 9.43 -34.44 -0.32 -15.37 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 20 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 25 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.14 1.15 6.29 -52.48 -0.33 0.82 16 30 H 0.08 0.94 7.67 -51.93 -0.40 0.55 16 31 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -33.99 326.09 -6.20 -40.20 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -4.47 Total: -4.45 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.87 Total: -6.89 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.54 Total: -22.88 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.99 -6.20 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918995794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.981 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds