Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21325 * 120.00017 * 2 1 4 4 C 1.46601 * 120.00374 * 179.97438 * 2 1 3 5 5 C 1.40291 * 120.24476 * 88.67905 * 4 2 1 6 6 F 1.35101 * 120.09756 * 0.02562 * 5 4 2 7 7 C 1.38047 * 119.80411 * 179.97438 * 5 4 2 8 8 C 1.38464 * 120.30881 * 359.97438 * 7 5 4 9 9 C 1.38150 * 120.50561 * 0.02562 * 8 7 5 10 10 C 1.38591 * 120.18579 * 359.97438 * 9 8 7 11 11 O 1.35604 * 120.15872 * 180.27398 * 10 9 8 12 12 C 1.42904 * 116.99598 * 359.73034 * 11 10 9 13 13 C 1.52999 * 109.47175 * 179.97438 * 12 11 10 14 14 O 1.42894 * 109.47386 * 64.99647 * 13 12 11 15 15 C 1.42894 * 114.00377 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47230 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00270 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00079 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99649 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46916 * 89.99988 * 20 18 16 22 22 H 1.48499 * 109.46897 * 209.99839 * 20 18 16 23 23 H 1.48497 * 109.46983 * 330.00161 * 20 18 16 24 24 H 1.08997 * 109.46995 * 185.18345 * 1 2 3 25 25 H 1.09005 * 109.47113 * 305.18471 * 1 2 3 26 26 H 1.09006 * 109.47275 * 65.18402 * 1 2 3 27 27 H 1.07997 * 119.84612 * 180.02562 * 7 5 4 28 28 H 1.08002 * 119.75110 * 180.02562 * 8 7 5 29 29 H 1.08005 * 119.90808 * 180.02562 * 9 8 7 30 30 H 1.08995 * 109.47592 * 299.99616 * 12 11 10 31 31 H 1.09006 * 109.46946 * 59.99781 * 12 11 10 32 32 H 1.09000 * 109.47622 * 185.00533 * 13 12 11 33 33 H 1.09006 * 109.46794 * 304.99820 * 13 12 11 34 34 H 1.08992 * 109.47231 * 300.00676 * 15 14 13 35 35 H 1.09007 * 109.46703 * 60.00735 * 15 14 13 36 36 H 0.97010 * 119.99577 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2696 0.0006 5 6 2.5692 -1.8960 -1.2108 6 9 2.2120 -1.3309 -2.3848 7 6 3.2602 -3.0911 -1.1996 8 6 3.6299 -3.6733 0.0010 9 6 3.3124 -3.0675 1.2013 10 6 2.6192 -1.8675 1.2143 11 8 2.3127 -1.2705 2.3927 12 6 2.7302 -1.9374 3.5856 13 6 2.2991 -1.1195 4.8047 14 8 0.8723 -1.0814 4.8724 15 6 0.3627 -0.3385 5.9816 16 6 -1.1439 -0.3653 5.9546 17 1 -1.6605 -0.8969 5.1691 18 6 -1.8627 0.2888 6.9326 19 7 -1.2336 0.9366 7.8887 20 14 -3.7301 0.2550 6.8995 21 1 -4.2178 -0.9154 7.6727 22 1 -4.2586 1.5035 7.5052 23 1 -4.1984 0.1497 5.4942 24 1 -0.3633 -1.0234 0.0928 25 1 -0.3633 0.5922 0.8399 26 1 -0.3634 0.4313 -0.9328 27 1 3.5143 -3.5737 -2.1318 28 1 4.1707 -4.6082 -0.0008 29 1 3.6059 -3.5299 2.1322 30 1 2.2711 -2.9249 3.6296 31 1 3.8153 -2.0409 3.5832 32 1 2.6937 -1.5809 5.7099 33 1 2.6859 -0.1042 4.7162 34 1 0.7171 -0.7841 6.9110 35 1 0.7092 0.6931 5.9180 36 1 -1.7393 1.3965 8.5770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918995794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -165.348216 kcal Electronic energy + Delta-G solvation = -21515.126324 eV Core-core repulsion = 17878.702927 eV Total energy + Delta-G solvation = -3636.423397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.14167 -41.55217 -40.10655 -38.79466 -37.96770 -34.96942 -33.10416 -31.75444 -30.80764 -30.23746 -28.97902 -25.10986 -24.73642 -24.37128 -22.75265 -21.31202 -19.57644 -18.71143 -18.02310 -17.84417 -17.75987 -17.35324 -17.05645 -16.65193 -16.27101 -16.16032 -15.94159 -15.75471 -15.65675 -15.51271 -14.82590 -13.95472 -13.83932 -13.55702 -13.43953 -13.26577 -13.18405 -12.90742 -12.80312 -12.79458 -12.66854 -12.32691 -12.00240 -11.87991 -11.30918 -10.97651 -10.91254 -10.29710 -9.98450 -9.40464 -8.33919 -6.46325 -0.14478 0.15876 0.65479 1.39444 1.42292 1.54295 1.89964 2.33299 2.40907 2.87786 3.00351 3.05694 3.19788 3.71893 3.85528 3.92411 3.98284 4.07636 4.12170 4.27604 4.42148 4.44591 4.46922 4.49210 4.66053 4.73790 4.82899 4.97182 4.99676 5.09359 5.14415 5.24823 5.52532 5.61791 5.93015 6.19690 6.24571 6.48751 6.77402 7.25504 8.78426 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.003863 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.436362 B = 7246.971183 C = 7947.010950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.415 3.585 3 O -0.490 6.490 4 C -0.259 4.259 5 C 0.149 3.851 6 F -0.137 7.137 7 C -0.185 4.185 8 C -0.020 4.020 9 C -0.216 4.216 10 C 0.173 3.827 11 O -0.330 6.330 12 C 0.068 3.932 13 C 0.048 3.952 14 O -0.407 6.407 15 C 0.208 3.792 16 C -0.549 4.549 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.172 0.828 28 H 0.186 0.814 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.040 0.960 34 H -0.005 1.005 35 H -0.019 1.019 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -12.747 -16.561 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.293 3.707 3 O -0.366 6.366 4 C -0.261 4.261 5 C 0.129 3.871 6 F -0.116 7.116 7 C -0.203 4.203 8 C -0.038 4.038 9 C -0.235 4.235 10 C 0.126 3.874 11 O -0.243 6.243 12 C -0.006 4.006 13 C -0.029 4.029 14 O -0.327 6.327 15 C 0.133 3.867 16 C -0.587 4.587 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.189 1.189 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.190 0.810 28 H 0.203 0.797 29 H 0.185 0.815 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.013 0.987 35 H -0.001 1.001 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.358 -11.966 -16.524 22.881 hybrid contribution -0.682 0.762 0.472 1.126 sum 9.676 -11.205 -16.052 21.837 Atomic orbital electron populations 1.22249 0.91177 1.06073 1.05519 1.22745 0.93245 0.87008 0.67708 1.90533 1.73270 1.35686 1.37128 1.19755 1.12500 1.01294 0.92587 1.17497 0.97880 0.93274 0.78421 1.91504 1.89955 1.85038 1.45081 1.21355 1.02442 0.94407 1.02123 1.21437 0.93696 0.99436 0.89203 1.21679 1.04232 0.95223 1.02319 1.18918 0.92592 0.91916 0.83991 1.86119 1.75342 1.49637 1.13232 1.23198 1.01197 0.96435 0.79722 1.22699 0.83143 0.99800 0.97276 1.87851 1.19865 1.74687 1.50283 1.19851 0.94221 0.88964 0.83629 1.21380 0.91389 1.34093 1.11824 0.91998 1.25952 1.05081 0.93916 0.94164 1.70067 1.38264 1.34136 1.14496 0.85198 0.77241 0.78207 0.78890 1.18941 1.20052 1.18931 0.88552 0.89217 0.86497 0.81028 0.79726 0.81476 0.89092 0.86457 0.89419 0.94206 0.98741 1.00114 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.30 10.32 71.24 0.73 -4.56 16 2 C 0.42 13.90 5.85 27.87 0.16 14.06 16 3 O -0.49 -19.90 17.86 -3.17 -0.06 -19.96 16 4 C -0.26 -7.46 5.47 -20.04 -0.11 -7.57 16 5 C 0.15 3.47 7.29 22.72 0.17 3.63 16 6 F -0.14 -3.38 16.84 44.97 0.76 -2.63 16 7 C -0.18 -2.78 10.00 22.28 0.22 -2.56 16 8 C -0.02 -0.24 10.02 22.30 0.22 -0.02 16 9 C -0.22 -3.72 9.02 22.33 0.20 -3.52 16 10 C 0.17 4.66 6.71 22.91 0.15 4.81 16 11 O -0.33 -10.85 9.55 -84.51 -0.81 -11.66 16 12 C 0.07 1.77 5.12 71.98 0.37 2.14 16 13 C 0.05 1.67 6.32 71.98 0.45 2.13 16 14 O -0.41 -19.75 10.29 -144.34 -1.49 -21.24 16 15 C 0.21 11.73 5.69 71.24 0.41 12.13 16 16 C -0.55 -32.85 9.43 25.60 0.24 -32.61 16 17 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 20 Si 0.98 44.36 29.54 68.60 2.03 46.38 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H 0.10 2.32 7.99 -2.39 -0.02 2.30 16 25 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 28 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 29 H 0.17 1.93 6.29 -2.91 -0.02 1.92 16 30 H 0.09 2.05 7.67 -2.39 -0.02 2.03 16 31 H 0.12 2.00 7.65 -2.38 -0.02 1.98 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 36 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -78.05 326.09 5.50 -72.56 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.09 Total: 3.33 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 3.69 Total: -11.03 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.77 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.35 Total: -52.85 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.76 Total: -2.63 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -78.05 5.50 -72.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918995794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.791 kcal (2) G-P(sol) polarization free energy of solvation -78.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds