Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47360 * 89.99689 * 6 5 4 8 8 C 1.46892 * 111.00165 * 293.95342 * 7 6 5 9 9 C 1.46905 * 111.00196 * 169.99762 * 7 6 5 10 10 C 1.50702 * 109.47202 * 190.00132 * 9 7 6 11 11 O 1.21286 * 120.00150 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99889 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00123 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47240 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99860 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00028 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46969 * 60.00314 * 18 16 14 20 20 H 1.48495 * 109.47352 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47028 * 300.00613 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 29 29 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 30 30 H 1.08999 * 109.47248 * 60.00171 * 8 7 6 31 31 H 1.08999 * 109.47784 * 179.97438 * 8 7 6 32 32 H 1.09005 * 109.47212 * 300.00047 * 8 7 6 33 33 H 1.09003 * 109.46809 * 309.99893 * 9 7 6 34 34 H 1.08996 * 109.46746 * 69.99923 * 9 7 6 35 35 H 0.97002 * 119.99916 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47346 * 300.00230 * 13 12 10 37 37 H 1.09006 * 109.47023 * 60.00142 * 13 12 10 38 38 H 0.96999 * 120.00170 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8446 -1.1490 1.3853 8 6 5.9576 0.1471 2.0673 9 6 7.1175 -1.8809 1.4314 10 6 7.4320 -2.2524 2.8577 11 8 6.6710 -1.9380 3.7482 12 7 8.5594 -2.9332 3.1438 13 6 8.8655 -3.2939 4.5303 14 6 10.1712 -4.0448 4.5775 15 1 10.7185 -4.2340 3.6660 16 6 10.6675 -4.4893 5.7846 17 7 10.0012 -4.2584 6.8947 18 14 12.2864 -5.4195 5.8433 19 1 13.3709 -4.5601 5.3041 20 1 12.5966 -5.7852 7.2487 21 1 12.1785 -6.6530 5.0235 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 5.4136 -1.9379 -0.5135 29 1 6.0389 -0.2713 -0.5134 30 1 4.9841 0.6372 2.0798 31 1 6.2984 -0.0092 3.0908 32 1 6.6739 0.7752 1.5375 33 1 7.0381 -2.7861 0.8293 34 1 7.9137 -1.2502 1.0362 35 1 9.1687 -3.1837 2.4317 36 1 8.9445 -2.3886 5.1323 37 1 8.0694 -3.9248 4.9258 38 1 10.3502 -4.5714 7.7439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920489160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -2.789717 kcal Electronic energy + Delta-G solvation = -19041.365010 eV Core-core repulsion = 16010.496605 eV Total energy + Delta-G solvation = -3030.868404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25943 -38.24651 -36.45011 -34.11331 -32.39866 -32.27275 -29.24796 -28.26313 -26.77319 -25.32421 -23.22009 -22.57662 -21.55006 -19.62534 -18.95280 -17.27202 -16.77106 -15.99409 -15.71498 -15.38949 -15.15315 -14.72886 -14.27014 -14.23625 -13.94810 -13.57765 -13.24582 -12.90234 -12.59684 -12.52037 -12.23534 -12.02362 -11.93767 -11.80033 -11.45015 -11.39331 -11.18650 -10.98144 -10.82292 -10.74915 -10.30333 -9.40159 -9.01369 -8.71901 -8.63860 -8.49623 -8.18279 -7.83643 -6.15683 -4.22764 0.87568 1.53850 1.95689 2.60649 3.25469 3.30273 3.31739 3.40700 3.77858 4.28779 4.46374 4.64710 4.73671 5.01242 5.05216 5.20113 5.22620 5.26872 5.36178 5.38479 5.43401 5.53503 5.61051 5.68493 5.70032 5.75898 6.05162 6.16054 6.33577 6.42187 6.95829 7.06297 7.33986 7.47178 7.53836 7.68647 7.98445 8.65303 8.80282 9.14822 9.44007 10.94479 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.044665 B = 0.002702 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.744975 B =10358.320727 C =10459.108311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.189 4.189 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.162 4.162 6 C 0.123 3.877 7 N -0.517 5.517 8 C 0.018 3.982 9 C 0.035 3.965 10 C 0.499 3.501 11 O -0.537 6.537 12 N -0.715 5.715 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 S 0.122 5.878 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.389 0.611 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 9.120 -17.848 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.307 4.307 3 C -0.171 4.171 4 C -0.166 4.166 5 C -0.280 4.280 6 C -0.007 4.007 7 N -0.242 5.242 8 C -0.130 4.130 9 C -0.096 4.096 10 C 0.283 3.717 11 O -0.415 6.415 12 N -0.364 5.364 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 S 0.387 5.613 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.769 7.458 -16.698 23.506 hybrid contribution 2.125 1.382 -0.608 2.607 sum -12.644 8.840 -17.305 23.184 Atomic orbital electron populations 1.20311 0.88049 1.03120 1.02477 1.24528 0.99950 0.96245 1.09981 1.19992 0.92851 0.99067 1.05177 1.20048 0.96197 0.95822 1.04554 1.24242 0.98349 0.96297 1.09118 1.20552 0.89390 1.00571 0.90139 1.61605 1.28318 1.20666 1.13570 1.22612 1.00972 0.88350 1.01027 1.22038 0.91132 0.99695 0.96757 1.20246 0.82036 0.79401 0.90044 1.90637 1.48356 1.54192 1.48283 1.46447 1.21841 1.55720 1.12442 1.19073 0.95878 0.95797 0.76147 1.21193 1.06005 1.37282 0.93732 0.91979 1.24956 0.97815 0.95940 0.95323 1.69966 1.38649 1.45356 0.98315 0.86475 0.83129 0.80096 0.77207 1.20090 1.21070 1.20063 1.84303 0.95995 1.08835 1.72191 0.90960 0.90698 0.91336 0.84723 0.84733 0.89723 0.92902 0.91330 0.88863 0.96405 0.88338 0.92292 0.77846 0.95646 0.95541 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.38 36.01 0.37 -0.22 16 2 C -0.19 -1.92 6.51 -36.00 -0.23 -2.16 16 3 C -0.14 -1.42 10.05 -41.21 -0.41 -1.83 16 4 C -0.14 -1.45 8.59 -41.21 -0.35 -1.81 16 5 C -0.16 -1.89 5.44 -36.00 -0.20 -2.09 16 6 C 0.12 1.40 5.46 -4.98 -0.03 1.37 16 7 N -0.52 -7.55 4.49 -245.83 -1.10 -8.66 16 8 C 0.02 0.26 8.90 60.06 0.53 0.80 16 9 C 0.04 0.50 5.45 -4.97 -0.03 0.48 16 10 C 0.50 9.96 7.52 -10.99 -0.08 9.87 16 11 O -0.54 -12.99 14.33 5.55 0.08 -12.91 16 12 N -0.72 -14.99 5.55 -61.47 -0.34 -15.33 16 13 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 14 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 S 0.12 1.39 23.31 -107.50 -2.51 -1.11 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.08 0.87 7.93 -51.92 -0.41 0.46 16 29 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.07 0.96 6.30 -51.93 -0.33 0.63 16 31 H 0.09 1.67 5.82 -51.93 -0.30 1.37 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 1.20 7.93 -51.93 -0.41 0.78 16 34 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -32.65 333.71 -9.55 -42.20 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.55 Total: 2.78 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.87 Total: -2.34 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.71 Total: -49.49 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.51 Total: -1.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.65 -9.55 -42.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920489160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.410 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds