Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47481 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.47597 * 180.02562 * 21 20 19 23 23 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 25 25 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 27 27 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 28 28 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 29 29 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 0.97004 * 120.00282 * 359.97438 * 19 17 16 32 32 H 1.09001 * 109.47189 * 300.00417 * 20 19 17 33 33 H 1.09003 * 109.46703 * 59.99604 * 20 19 17 34 34 H 1.09001 * 109.47488 * 300.00526 * 21 20 19 35 35 H 1.09005 * 109.47025 * 59.99478 * 21 20 19 36 36 H 1.07998 * 120.03894 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1290 -3.9310 0.0041 19 7 9.9786 -4.0096 2.2188 20 6 11.4347 -4.0910 2.3585 21 6 11.8012 -4.1683 3.8418 22 9 13.1917 -4.2454 3.9753 23 6 5.3549 -2.4724 -0.2272 24 1 -0.4849 0.8401 -0.0004 25 1 2.1493 -3.5267 0.0145 26 1 3.2702 -5.7081 -0.1897 27 1 5.7197 -5.8204 -0.4050 28 1 7.7494 -4.6563 -1.0449 29 1 7.8421 -2.8801 -0.9753 30 1 7.5192 -3.8578 1.6545 31 1 9.4148 -4.0108 3.0082 32 1 11.7996 -4.9816 1.8468 33 1 11.8920 -3.2054 1.9172 34 1 11.4364 -3.2775 4.3532 35 1 11.3437 -5.0536 4.2835 36 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116905628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = -85.465373 kcal Electronic energy + Delta-G solvation = -20686.155122 eV Core-core repulsion = 17085.488456 eV Total energy + Delta-G solvation = -3600.666666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.10952 -40.15075 -39.27313 -37.10973 -35.46821 -34.54739 -32.47675 -31.21758 -29.78633 -29.22726 -25.91674 -25.09692 -23.26275 -21.88761 -21.16231 -20.75295 -18.77102 -17.80303 -17.33945 -16.89207 -16.83187 -15.73371 -15.64636 -15.29936 -15.26202 -14.90423 -14.34096 -14.14847 -14.02318 -13.85781 -13.57661 -13.40707 -12.72553 -12.61062 -12.22453 -12.07657 -11.65271 -11.49437 -11.40879 -10.97998 -10.91818 -10.79616 -10.39417 -10.23566 -9.51760 -9.49727 -8.96681 -8.94360 -8.38755 -7.52343 -6.49561 -4.17051 1.71504 2.10609 2.59425 3.08770 3.16690 3.21059 3.34403 4.03665 4.08755 4.16766 4.29920 4.41692 4.52673 4.62679 4.89503 4.99883 5.07640 5.26944 5.38770 5.48622 5.61794 5.71500 5.80073 5.97052 6.10863 6.11154 6.37935 6.40625 6.63446 6.71173 6.96184 7.07627 7.16531 7.45702 7.69481 7.85178 7.94093 8.45340 8.85286 9.46015 10.57849 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.003027 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.644451 B = 9248.236754 C =10004.598731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.212 4.212 12 C -0.078 4.078 13 C -0.185 4.185 14 C -0.076 4.076 15 C 0.186 3.814 16 N -0.735 5.735 17 C 0.705 3.295 18 O -0.591 6.591 19 N -0.749 5.749 20 C 0.108 3.892 21 C 0.054 3.946 22 F -0.208 7.208 23 C -0.171 4.171 24 H 0.280 0.720 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.400 0.600 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.481 -8.536 6.799 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.205 4.205 14 C -0.076 4.076 15 C 0.063 3.937 16 N -0.390 5.390 17 C 0.405 3.595 18 O -0.469 6.469 19 N -0.407 5.407 20 C -0.018 4.018 21 C -0.001 4.001 22 F -0.189 7.189 23 C -0.191 4.191 24 H 0.091 0.909 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.052 -8.155 5.875 19.794 hybrid contribution -0.523 0.648 0.751 1.121 sum 16.530 -7.506 6.626 19.325 Atomic orbital electron populations 1.69642 1.05593 1.28618 1.47622 1.24473 0.95030 0.98887 0.95545 0.86176 0.80275 0.81365 0.79062 1.19799 1.20733 1.18384 1.20762 0.76781 0.96663 1.52508 0.87586 1.83575 1.22690 1.25566 1.80207 1.19063 0.91564 0.85632 0.93375 1.21376 1.01333 0.91933 1.08458 1.20811 0.94168 0.96849 0.97786 1.20559 0.93846 0.96763 1.09305 1.19268 0.93359 0.92980 1.02020 1.20019 0.88451 1.02524 0.82692 1.45248 1.04585 1.79063 1.10099 1.15858 0.82403 0.77904 0.83317 1.90938 1.61305 1.57964 1.36702 1.44809 1.07118 1.81376 1.07364 1.21649 0.80382 1.04105 0.95632 1.22047 0.76936 1.04274 0.96864 1.92799 1.31290 1.98009 1.96788 1.20090 0.91966 0.97265 1.09731 0.90947 0.84828 0.86960 0.87255 0.90919 0.90924 0.76636 0.76796 0.90415 0.90403 0.89980 0.90019 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.96 55.48 0.77 -23.93 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.10 28.62 -169.99 -4.86 16.23 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.64 9.95 30.89 0.31 -10.33 16 8 H 0.11 2.93 5.44 -52.49 -0.29 2.65 16 9 O -0.22 -5.43 8.59 0.05 0.00 -5.43 16 10 C 0.16 3.37 6.65 -39.11 -0.26 3.11 16 11 C -0.21 -4.24 9.17 -39.40 -0.36 -4.60 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -2.78 9.70 -39.54 -0.38 -3.16 16 14 C -0.08 -1.16 5.25 -104.65 -0.55 -1.70 16 15 C 0.19 2.50 5.80 -5.19 -0.03 2.47 16 16 N -0.74 -8.56 5.55 -66.41 -0.37 -8.93 16 17 C 0.71 8.89 8.57 -86.92 -0.74 8.14 16 18 O -0.59 -9.93 16.34 5.29 0.09 -9.84 16 19 N -0.75 -6.34 5.56 -65.23 -0.36 -6.70 16 20 C 0.11 0.85 6.13 -4.04 -0.02 0.83 16 21 C 0.05 0.29 7.67 37.15 0.28 0.58 16 22 F -0.21 -1.74 17.36 2.25 0.04 -1.70 16 23 C -0.17 -3.11 9.65 -39.39 -0.38 -3.49 16 24 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.40 3.91 8.48 -40.82 -0.35 3.56 16 31 H 0.40 2.13 8.49 -40.82 -0.35 1.78 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -31.70 320.61 -6.71 -38.41 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.21 Total: 5.27 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.63 Total: -8.20 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.04 Total: -39.56 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.70 -6.71 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116905628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.056 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds