Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99711 * 2 1 4 4 H 1.48498 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47216 * 300.00034 * 3 2 1 6 6 H 1.48495 * 109.47340 * 60.00345 * 3 2 1 7 7 C 1.37879 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46684 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46864 * 179.97438 * 11 10 9 13 13 O 1.42101 * 109.47096 * 296.38503 * 12 11 10 14 14 C 1.81398 * 103.00075 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47364 * 179.97438 * 14 12 11 16 16 C 1.39780 * 125.89247 * 269.97537 * 15 14 12 17 17 C 1.35538 * 107.89186 * 180.02562 * 16 15 14 18 18 N 1.34708 * 107.88612 * 359.80889 * 17 16 15 19 19 N 1.30704 * 125.89402 * 89.97233 * 15 14 12 20 20 C 1.47143 * 111.01564 * 180.28687 * 18 17 16 21 21 C 1.54372 * 105.57074 * 342.88554 * 20 18 17 22 22 C 1.51430 * 141.97526 * 179.81602 * 17 16 15 23 23 H 0.96993 * 119.99824 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47104 * 59.99866 * 9 7 2 25 25 H 1.09001 * 109.46561 * 300.00129 * 9 7 2 26 26 H 1.08994 * 109.47489 * 59.99448 * 10 9 7 27 27 H 1.09007 * 109.46903 * 299.99239 * 10 9 7 28 28 H 1.09002 * 109.47270 * 60.00126 * 11 10 9 29 29 H 1.08993 * 109.47032 * 299.99509 * 11 10 9 30 30 H 1.09009 * 109.47077 * 59.99795 * 14 12 11 31 31 H 1.08999 * 109.46989 * 300.00490 * 14 12 11 32 32 H 1.07997 * 126.05686 * 0.03801 * 16 15 14 33 33 H 1.09003 * 110.22984 * 223.86725 * 20 18 17 34 34 H 1.08998 * 110.23083 * 101.91142 * 20 18 17 35 35 H 1.08997 * 110.97688 * 267.60315 * 21 20 18 36 36 H 1.09002 * 110.97682 * 143.83325 * 21 20 18 37 37 H 1.09001 * 110.48851 * 77.84534 * 22 17 16 38 38 H 1.09000 * 110.48580 * 315.20359 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 16 2.6594 -6.3658 -0.0007 13 8 3.4188 -6.3390 -1.2014 14 6 1.5812 -7.8246 0.0010 15 6 2.4251 -9.0731 -0.0001 16 6 2.8821 -9.7524 -1.1330 17 6 3.6042 -10.8205 -0.7151 18 7 3.6084 -10.8156 0.6319 19 7 2.8562 -9.7076 1.0582 20 6 4.3834 -11.9489 1.1613 21 6 4.5228 -12.9404 -0.0136 22 6 4.3973 -12.0013 -1.2347 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.8722 -3.6042 0.8893 27 1 2.8721 -3.6043 -0.8907 28 1 0.8535 -5.0451 -0.8897 29 1 0.8542 -5.0445 0.8903 30 1 0.9510 -7.8117 -0.8884 31 1 0.9529 -7.8110 0.8916 32 1 2.6933 -9.4752 -2.1596 33 1 3.8494 -12.4172 1.9882 34 1 5.3669 -11.6124 1.4893 35 1 3.7176 -13.6749 -0.0020 36 1 5.4962 -13.4307 0.0030 37 1 5.3829 -11.6802 -1.5719 38 1 3.8591 -12.4964 -2.0429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118228166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 35.237266 kcal Electronic energy + Delta-G solvation = -18783.006965 eV Core-core repulsion = 15753.787534 eV Total energy + Delta-G solvation = -3029.219431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86314 -36.80385 -35.38227 -34.37699 -31.98164 -31.73791 -30.63386 -28.24212 -27.46388 -26.41351 -23.41494 -22.11069 -20.61939 -20.26061 -19.55521 -17.30033 -16.92046 -16.28543 -16.09932 -15.25445 -14.93251 -14.55513 -14.47133 -14.41034 -13.97846 -13.64874 -13.37620 -13.21758 -12.87659 -12.38929 -12.27659 -12.05603 -12.04653 -11.84647 -11.60440 -11.32242 -10.85231 -10.75323 -10.67739 -10.62801 -10.21118 -9.74829 -9.49085 -9.12184 -8.90089 -8.60729 -8.33127 -7.86931 -5.97922 -4.00199 1.43271 1.82075 2.09705 2.76067 2.94818 3.33517 3.40804 3.45820 3.68519 4.02292 4.09979 4.25450 4.37043 4.48766 4.68730 4.91826 4.95921 4.99829 5.14529 5.28804 5.37837 5.43688 5.44668 5.53988 5.61971 5.67179 5.68819 6.00669 6.26087 6.53461 6.56687 6.65482 6.75774 7.09212 7.64261 7.69663 7.82402 8.02061 8.44108 9.07101 9.63889 11.13414 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.056617 B = 0.002574 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.432028 B =10876.319127 C =10968.023112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.435 4.435 12 S 1.242 4.758 13 O -0.840 6.840 14 C -0.373 4.373 15 C 0.103 3.897 16 C -0.247 4.247 17 C 0.058 3.942 18 N -0.394 5.394 19 N -0.266 5.266 20 C 0.131 3.869 21 C -0.132 4.132 22 C -0.067 4.067 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 -27.967 2.913 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.574 4.574 12 S 1.440 4.560 13 O -0.835 6.835 14 C -0.509 4.509 15 C -0.063 4.063 16 C -0.276 4.276 17 C -0.070 4.070 18 N -0.177 5.177 19 N -0.088 5.088 20 C 0.010 3.990 21 C -0.170 4.170 22 C -0.106 4.106 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.434 -27.948 4.401 29.523 hybrid contribution -1.178 0.976 -2.700 3.104 sum 7.256 -26.972 1.700 27.983 Atomic orbital electron populations 1.69977 1.06070 1.26482 1.51068 1.25037 0.94867 0.99311 0.95344 0.86526 0.80182 0.83716 0.77544 1.19663 1.21070 1.20971 1.21324 0.93203 0.91036 1.50332 0.92480 1.19106 0.93831 0.90911 0.97379 1.21308 0.98953 0.91819 1.01116 1.27705 1.11685 1.10795 1.07244 1.70953 0.87703 0.85070 1.12233 1.93094 1.55805 1.83726 1.50897 1.26219 1.09027 1.07010 1.08622 1.21230 0.98371 0.96023 0.90664 1.20584 1.08841 0.98210 1.00012 1.22145 0.99756 0.98181 0.86902 1.50022 1.40233 1.21457 1.06022 1.77338 1.12629 0.97379 1.21479 1.22309 0.95443 0.83220 0.98047 1.22801 1.04427 0.97085 0.92736 1.20887 0.99984 0.91338 0.98346 0.93076 0.96707 0.96206 0.92109 0.92814 0.89976 0.86711 0.87779 0.85041 0.83863 0.89035 0.89266 0.89503 0.88010 0.88611 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.95 5.16 -26.73 -0.14 -2.09 16 11 C -0.44 -7.13 5.92 37.16 0.22 -6.91 16 12 S 1.24 17.79 13.14 -107.50 -1.41 16.38 16 13 O -0.84 -17.00 18.14 -35.23 -0.64 -17.64 16 14 C -0.37 -4.64 6.48 36.00 0.23 -4.41 16 15 C 0.10 1.46 6.47 -82.50 -0.53 0.93 16 16 C -0.25 -3.42 10.74 -39.97 -0.43 -3.85 16 17 C 0.06 0.67 7.49 -81.94 -0.61 0.05 16 18 N -0.39 -4.61 4.85 -55.72 -0.27 -4.88 16 19 N -0.27 -3.76 12.70 33.63 0.43 -3.34 16 20 C 0.13 0.84 7.78 -2.97 -0.02 0.82 16 21 C -0.13 -0.51 7.17 -25.19 -0.18 -0.69 16 22 C -0.07 -0.42 6.86 -26.71 -0.18 -0.61 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 29 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.10 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -39.00 334.69 -9.22 -48.22 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.88 Total: -4.12 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -2.20 Total: -30.07 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.89 Total: -34.81 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.64 Total: -17.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 17.79 SS G_CDS: -1.41 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -39.00 -9.22 -48.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118228166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.453 kcal (2) G-P(sol) polarization free energy of solvation -39.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds