Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 120.00191 * 2 1 4 4 H 1.48496 * 109.47629 * 270.00025 * 3 2 1 5 5 H 1.48508 * 109.46941 * 30.00160 * 3 2 1 6 6 H 1.48501 * 109.47127 * 149.99610 * 3 2 1 7 7 C 1.37881 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00316 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99656 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47203 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99996 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00005 * 179.97438 * 10 9 7 13 13 C 1.39835 * 119.99821 * 184.61952 * 12 10 9 14 14 C 1.38976 * 119.95052 * 324.63925 * 13 12 10 15 15 C 1.37862 * 120.04937 * 179.76788 * 14 13 12 16 16 C 1.39402 * 119.94717 * 0.50448 * 15 14 13 17 17 C 1.48355 * 120.04784 * 179.72510 * 16 15 14 18 18 C 1.39784 * 120.54053 * 0.02562 * 17 16 15 19 19 C 1.38407 * 118.31167 * 179.97438 * 18 17 16 20 20 C 1.38319 * 119.28284 * 359.97438 * 19 18 17 21 21 N 1.31889 * 121.03726 * 0.02641 * 20 19 18 22 22 C 1.31742 * 121.85301 * 359.67453 * 21 20 19 23 23 C 1.39391 * 119.90156 * 359.74505 * 16 15 14 24 24 C 1.37871 * 119.95152 * 0.02562 * 23 16 15 25 25 H 0.96996 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47246 * 60.00122 * 9 7 2 27 27 H 1.09008 * 109.47324 * 300.00069 * 9 7 2 28 28 H 0.96997 * 120.00241 * 4.89961 * 12 10 9 29 29 H 1.07996 * 119.97307 * 0.02562 * 14 13 12 30 30 H 1.07998 * 120.02986 * 180.27570 * 15 14 13 31 31 H 1.07995 * 120.84501 * 359.95811 * 18 17 16 32 32 H 1.07999 * 120.35682 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.48280 * 180.02562 * 20 19 18 34 34 H 1.07994 * 119.70569 * 180.31513 * 22 21 20 35 35 H 1.07999 * 120.02803 * 180.02562 * 23 16 15 36 36 H 1.07991 * 119.97564 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0138 -2.6150 0.0010 11 8 3.2256 -3.5369 0.0000 12 7 5.3389 -2.8613 0.0009 13 6 5.8057 -4.1758 -0.0967 14 6 5.1015 -5.2090 0.5099 15 6 5.5572 -6.5063 0.4109 16 6 6.7310 -6.7800 -0.2895 17 6 7.2268 -8.1745 -0.3923 18 6 6.5254 -9.2238 0.2086 19 6 7.0292 -10.5068 0.0833 20 6 8.1994 -10.7078 -0.6264 21 7 8.8394 -9.6976 -1.1826 22 6 8.3954 -8.4604 -1.0951 23 6 7.4385 -5.7414 -0.8927 24 6 6.9764 -4.4461 -0.7951 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 5.9687 -2.1271 0.0727 29 1 4.1943 -4.9959 1.0558 30 1 5.0073 -7.3096 0.8787 31 1 5.6137 -9.0381 0.7569 32 1 6.5139 -11.3420 0.5339 33 1 8.5952 -11.7076 -0.7266 34 1 8.9446 -7.6599 -1.5683 35 1 8.3479 -5.9512 -1.4362 36 1 7.5244 -3.6412 -1.2619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = 2.594410 kcal Electronic energy + Delta-G solvation = -19990.808667 eV Core-core repulsion = 16824.729784 eV Total energy + Delta-G solvation = -3166.078882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59811 -40.97187 -39.28167 -36.02804 -35.05289 -33.72029 -32.92916 -31.86677 -31.74182 -29.24923 -25.89738 -25.14668 -24.42100 -23.14912 -22.26666 -21.21815 -19.15172 -18.97130 -18.10809 -17.63812 -17.28120 -17.04420 -16.38233 -16.23395 -15.41708 -15.22765 -15.16349 -14.99650 -14.88290 -14.52440 -14.20792 -13.90458 -13.84454 -13.43299 -13.29242 -12.81827 -12.67651 -12.43244 -12.13378 -11.87440 -11.63431 -11.56115 -10.80016 -10.78161 -10.65708 -10.39917 -10.18310 -9.92869 -8.73346 -8.27459 -6.36820 -0.43637 0.30462 0.43611 0.77142 1.40177 1.44205 1.54283 1.75191 2.18861 2.37827 2.69636 3.06020 3.09975 3.43251 3.70429 3.76024 3.94767 4.01397 4.06150 4.11515 4.22898 4.38796 4.52411 4.60745 4.68276 4.69200 4.82454 5.01421 5.04490 5.13532 5.14102 5.29854 5.37209 5.47792 5.52680 5.61998 5.76251 6.02911 6.21497 6.57607 6.80213 7.00764 7.21918 7.35525 8.90032 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.002877 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.667263 B = 9730.854990 C =10197.840834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.226 1.226 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.025 4.025 10 C 0.520 3.480 11 O -0.560 6.560 12 N -0.668 5.668 13 C 0.139 3.861 14 C -0.147 4.147 15 C -0.094 4.094 16 C -0.073 4.073 17 C -0.096 4.096 18 C -0.085 4.085 19 C -0.164 4.164 20 C 0.082 3.918 21 N -0.507 5.507 22 C 0.095 3.905 23 C -0.085 4.085 24 C -0.138 4.138 25 H 0.268 0.732 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.428 0.572 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.409 -14.489 -0.129 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.148 1.148 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.065 4.065 10 C 0.310 3.690 11 O -0.436 6.436 12 N -0.315 5.315 13 C 0.044 3.956 14 C -0.168 4.168 15 C -0.113 4.113 16 C -0.075 4.075 17 C -0.098 4.098 18 C -0.111 4.111 19 C -0.183 4.183 20 C -0.074 4.074 21 N -0.215 5.215 22 C -0.062 4.062 23 C -0.103 4.103 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.267 0.733 29 H 0.128 0.872 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.179 0.821 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 22.430 -15.140 -0.595 27.068 hybrid contribution -1.393 1.150 0.634 1.914 sum 21.037 -13.990 0.039 25.264 Atomic orbital electron populations 1.70096 1.08871 1.28473 1.51924 1.26157 0.95792 1.03980 0.93627 0.85528 0.79910 0.76706 0.79603 1.18688 1.21367 1.14848 1.21152 0.90907 0.93762 1.51629 0.95251 1.19626 0.95857 0.89942 1.01082 1.21466 0.81268 0.93009 0.73242 1.90589 1.56658 1.47703 1.48667 1.43606 1.07439 1.07393 1.73085 1.18236 0.95605 0.84784 0.96943 1.21218 1.00903 0.93416 1.01249 1.21186 0.95700 0.95794 0.98582 1.18693 0.95733 0.92196 1.00881 1.19843 0.97045 0.92933 1.00016 1.22013 0.99605 0.92625 0.96808 1.22417 0.97686 0.98002 1.00182 1.23318 0.92265 0.98947 0.92843 1.67687 1.33462 1.00518 1.19833 1.23164 0.93082 0.94450 0.95507 1.21319 1.00057 0.90828 0.98088 1.21142 0.96334 0.98611 0.99690 0.92291 0.90565 0.90749 0.73313 0.87239 0.84598 0.83668 0.81777 0.80214 0.80899 0.82136 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.96 40.98 27.47 68.60 1.88 42.87 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.23 -8.12 6.54 99.48 0.65 -7.47 16 7 C -0.54 -31.61 9.48 25.60 0.24 -31.36 16 8 H 0.03 2.05 7.00 -2.91 -0.02 2.03 16 9 C -0.03 -1.11 4.53 29.10 0.13 -0.98 16 10 C 0.52 21.97 7.66 87.66 0.67 22.64 16 11 O -0.56 -29.15 12.90 -3.07 -0.04 -29.19 16 12 N -0.67 -20.19 5.33 -303.41 -1.62 -21.81 16 13 C 0.14 4.09 6.30 38.22 0.24 4.33 16 14 C -0.15 -4.84 8.68 22.36 0.19 -4.65 16 15 C -0.09 -2.49 9.43 22.46 0.21 -2.28 16 16 C -0.07 -1.65 5.88 -20.03 -0.12 -1.77 16 17 C -0.10 -1.93 5.89 -19.95 -0.12 -2.05 16 18 C -0.08 -1.49 9.53 22.68 0.22 -1.28 16 19 C -0.16 -2.28 10.10 22.33 0.23 -2.05 16 20 C 0.08 1.26 11.17 84.70 0.95 2.21 16 21 N -0.51 -10.08 10.35 -194.93 -2.02 -12.10 16 22 C 0.09 1.78 10.60 84.97 0.90 2.68 16 23 C -0.08 -1.63 9.43 22.46 0.21 -1.42 16 24 C -0.14 -2.93 9.95 22.36 0.22 -2.70 16 25 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.08 2.96 7.20 -2.39 -0.02 2.94 16 27 H 0.07 2.87 7.57 -2.38 -0.02 2.85 16 28 H 0.43 9.05 8.82 -92.71 -0.82 8.23 16 29 H 0.11 4.35 6.23 -2.91 -0.02 4.33 16 30 H 0.14 3.08 6.26 -2.91 -0.02 3.06 16 31 H 0.15 2.21 6.32 -2.91 -0.02 2.19 16 32 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.17 2.40 6.22 -2.91 -0.02 2.38 16 35 H 0.16 1.95 6.23 -2.91 -0.02 1.93 16 36 H 0.16 2.33 8.06 -2.92 -0.02 2.30 16 Total: -1.00 -81.14 309.19 3.41 -77.72 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.26 Total: 21.01 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.64 Total: -18.16 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -3.33 Total: -94.25 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.04 Total: -29.19 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.87 kcal Total: -81.14 3.41 -77.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.318 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds