Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00472 * 2 1 4 4 H 1.48500 * 109.47270 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.47208 * 29.99840 * 3 2 1 6 6 H 1.48502 * 109.47654 * 150.00091 * 3 2 1 7 7 C 1.37881 * 119.99486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99536 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47355 * 179.97438 * 9 7 2 11 11 O 1.21282 * 119.99828 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99984 * 180.02562 * 10 9 7 13 13 C 1.39671 * 119.99948 * 184.52245 * 12 10 9 14 14 C 1.38765 * 120.13407 * 325.24978 * 13 12 10 15 15 C 1.38119 * 120.04690 * 179.97438 * 14 13 12 16 16 C 1.38433 * 120.33086 * 359.97438 * 15 14 13 17 17 C 1.37985 * 120.27557 * 359.71898 * 16 15 14 18 18 C 1.39330 * 119.94185 * 0.55865 * 17 16 15 19 19 C 1.48253 * 120.16036 * 179.72150 * 18 17 16 20 20 C 1.39828 * 120.90887 * 129.44407 * 19 18 17 21 21 C 1.37939 * 119.01226 * 179.77595 * 20 19 18 22 22 N 1.31944 * 120.88896 * 0.50972 * 21 20 19 23 23 C 1.31950 * 122.01347 * 359.74024 * 22 21 20 24 24 C 1.37937 * 120.88570 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99392 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46731 * 59.99994 * 9 7 2 27 27 H 1.08995 * 109.47406 * 300.00036 * 9 7 2 28 28 H 0.97003 * 120.00293 * 4.51673 * 12 10 9 29 29 H 1.08002 * 119.97522 * 359.95316 * 14 13 12 30 30 H 1.07994 * 119.83300 * 179.97438 * 15 14 13 31 31 H 1.07988 * 119.86350 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.02930 * 180.30151 * 17 16 15 33 33 H 1.08000 * 120.49413 * 0.02562 * 20 19 18 34 34 H 1.08003 * 119.56017 * 180.22797 * 21 20 19 35 35 H 1.07993 * 119.55510 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.49597 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2301 -3.6447 0.0015 11 8 3.4225 -3.4232 0.0009 12 7 1.7808 -4.9153 0.0018 13 6 2.6848 -5.9758 0.0970 14 6 3.9344 -5.8815 -0.4990 15 6 4.8272 -6.9310 -0.4034 16 6 4.4830 -8.0809 0.2863 17 6 3.2465 -8.1866 0.8895 18 6 2.3348 -7.1371 0.7952 19 6 1.0026 -7.2480 1.4362 20 6 0.5219 -6.2363 2.2733 21 6 -0.7251 -6.3778 2.8456 22 7 -1.4560 -7.4529 2.6200 23 6 -1.0375 -8.4323 1.8411 24 6 0.1952 -8.3699 1.2253 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5574 -0.8881 27 1 0.6246 -2.5563 0.8919 28 1 0.8295 -5.0934 -0.0639 29 1 4.2089 -4.9870 -1.0384 30 1 5.7986 -6.8541 -0.8689 31 1 5.1870 -8.8967 0.3567 32 1 2.9840 -9.0836 1.4306 33 1 1.1165 -5.3555 2.4656 34 1 -1.1067 -5.6001 3.4906 35 1 -1.6683 -9.2948 1.6843 36 1 0.5315 -9.1754 0.5893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = 20.627111 kcal Electronic energy + Delta-G solvation = -20881.592499 eV Core-core repulsion = 17716.295573 eV Total energy + Delta-G solvation = -3165.296926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65032 -39.53133 -37.99068 -34.46298 -33.38010 -33.03716 -31.25589 -30.23406 -29.64469 -28.30050 -24.25778 -24.03604 -23.41340 -22.16949 -21.21721 -19.76461 -17.81620 -16.98184 -16.47770 -16.21994 -15.88082 -15.76247 -15.10801 -14.84742 -14.57641 -14.10740 -13.94204 -13.72347 -13.66023 -13.13878 -12.95289 -12.69895 -12.20188 -11.81202 -11.60459 -11.39852 -11.29386 -10.86275 -10.73980 -10.10961 -10.04301 -9.92869 -9.51536 -9.38959 -9.22222 -8.90483 -8.58459 -8.51792 -7.84318 -6.14223 -4.15013 0.77280 1.09464 1.47282 1.64877 3.30014 3.35801 3.37083 3.41315 3.58286 3.73839 3.95342 4.38916 4.41767 4.42479 4.79700 4.95427 5.02544 5.10122 5.13857 5.24313 5.34750 5.54344 5.57415 5.64695 5.74563 5.82174 5.97781 6.16701 6.17151 6.39855 6.51500 6.58783 6.65279 6.73326 7.01463 7.16589 7.22108 7.77079 7.88786 7.92362 8.20897 8.89822 8.95811 9.50582 10.97882 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.004988 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.613770 B = 5611.777972 C = 7128.153290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.008 3.992 10 C 0.514 3.486 11 O -0.520 6.520 12 N -0.689 5.689 13 C 0.185 3.815 14 C -0.126 4.126 15 C -0.093 4.093 16 C -0.149 4.149 17 C -0.083 4.083 18 C -0.101 4.101 19 C 0.007 3.993 20 C -0.158 4.158 21 C 0.104 3.896 22 N -0.489 5.489 23 C 0.096 3.904 24 C -0.165 4.165 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.407 0.593 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -18.325 1.686 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.306 3.694 11 O -0.394 6.394 12 N -0.335 5.335 13 C 0.088 3.912 14 C -0.147 4.147 15 C -0.112 4.112 16 C -0.168 4.168 17 C -0.102 4.102 18 C -0.104 4.104 19 C -0.001 4.001 20 C -0.177 4.177 21 C -0.052 4.052 22 N -0.198 5.198 23 C -0.060 4.060 24 C -0.185 4.185 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.243 0.757 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.391 -17.978 2.098 18.154 hybrid contribution 0.736 0.850 -0.430 1.203 sum 2.126 -17.128 1.668 17.340 Atomic orbital electron populations 1.69954 1.06056 1.27117 1.50605 1.25000 0.94920 0.99545 0.94976 0.86408 0.79842 0.82505 0.78231 1.20549 1.21188 1.19627 1.21109 0.94226 0.88883 1.50875 0.90592 1.19279 0.93969 0.90059 0.99848 1.22374 0.91517 0.82815 0.72700 1.90539 1.17824 1.84083 1.46958 1.44194 1.09786 1.05342 1.74131 1.17891 0.91466 0.87236 0.94602 1.21399 0.93122 1.00002 1.00153 1.21146 0.99163 0.92811 0.98043 1.20955 0.96776 0.98487 1.00559 1.20899 0.93216 0.97156 0.98941 1.18460 0.94177 0.95897 1.01902 1.19094 0.92866 0.93782 0.94402 1.22403 0.97692 0.99932 0.97714 1.22760 0.90618 0.94971 0.96872 1.67672 1.35595 1.01495 1.15045 1.22662 0.93775 0.96924 0.92660 1.22220 0.95669 0.98670 1.01918 0.92753 0.93108 0.93015 0.75725 0.83697 0.85829 0.86064 0.85937 0.84390 0.82378 0.82834 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.32 8.92 -34.44 -0.31 -14.63 16 8 H 0.08 2.21 6.75 -52.48 -0.35 1.85 16 9 C 0.01 0.18 5.46 -29.04 -0.16 0.03 16 10 C 0.51 11.09 7.67 -10.99 -0.08 11.00 16 11 O -0.52 -12.62 12.88 5.56 0.07 -12.55 16 12 N -0.69 -11.81 4.14 -9.69 -0.04 -11.85 16 13 C 0.18 2.97 6.25 -83.45 -0.52 2.44 16 14 C -0.13 -2.04 8.69 -39.43 -0.34 -2.39 16 15 C -0.09 -1.20 10.03 -39.55 -0.40 -1.60 16 16 C -0.15 -1.68 10.03 -39.60 -0.40 -2.08 16 17 C -0.08 -0.97 9.55 -39.27 -0.38 -1.35 16 18 C -0.10 -1.38 5.53 -104.73 -0.58 -1.96 16 19 C 0.01 0.09 4.98 -104.59 -0.52 -0.43 16 20 C -0.16 -2.09 8.44 -39.10 -0.33 -2.42 16 21 C 0.10 1.32 11.17 -17.61 -0.20 1.12 16 22 N -0.49 -6.35 10.35 -13.35 -0.14 -6.49 16 23 C 0.10 1.05 11.17 -17.61 -0.20 0.85 16 24 C -0.16 -1.76 9.66 -39.10 -0.38 -2.14 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.41 6.22 7.66 -40.82 -0.31 5.91 16 29 H 0.15 2.65 6.20 -52.49 -0.33 2.33 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.97 7.72 -52.49 -0.41 1.56 16 34 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -31.59 315.78 -8.43 -40.02 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.92 Total: 6.50 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -4.88 Total: -12.07 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.56 Total: -43.26 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.59 -8.43 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.642 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds