Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33390 * 125.20482 * 2 1 4 4 C 1.38417 * 114.92005 * 179.75002 * 3 2 1 5 5 C 1.33390 * 114.92073 * 0.43240 * 4 3 2 6 6 C 1.50706 * 125.20186 * 179.86308 * 5 4 3 7 7 H 1.09000 * 109.47318 * 359.71040 * 6 5 4 8 8 C 1.53002 * 109.46925 * 239.71807 * 6 5 4 9 9 C 1.50698 * 109.47294 * 119.72000 * 6 5 4 10 10 O 1.21282 * 120.00025 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 6 5 12 12 C 1.46496 * 119.99846 * 179.97438 * 11 9 6 13 13 C 1.53006 * 109.46995 * 179.97438 * 12 11 9 14 14 N 1.46504 * 109.46883 * 180.02562 * 13 12 11 15 15 C 1.36935 * 119.99276 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00780 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99628 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47259 * 90.00156 * 19 17 15 21 21 H 1.48508 * 109.47251 * 210.00098 * 19 17 15 22 22 H 1.48498 * 109.47493 * 330.00179 * 19 17 15 23 23 S 1.75884 * 109.59487 * 359.59438 * 5 4 3 24 24 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47282 * 300.00235 * 1 2 3 26 26 H 1.09004 * 109.46879 * 59.99574 * 1 2 3 27 27 H 1.08005 * 122.53660 * 359.97438 * 3 2 1 28 28 H 1.07999 * 122.53924 * 180.27565 * 4 3 2 29 29 H 1.09004 * 109.47059 * 59.99503 * 8 6 5 30 30 H 1.08992 * 109.47060 * 179.97438 * 8 6 5 31 31 H 1.09004 * 109.46930 * 299.99901 * 8 6 5 32 32 H 0.97002 * 119.99767 * 359.97438 * 11 9 6 33 33 H 1.08998 * 109.47703 * 299.99475 * 12 11 9 34 34 H 1.09001 * 109.47464 * 60.00214 * 12 11 9 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 36 36 H 1.08992 * 109.47533 * 59.99650 * 13 12 11 37 37 H 0.96998 * 120.00303 * 359.97438 * 14 13 12 38 38 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 0.0055 5 6 3.9750 -0.4478 0.0008 6 6 5.3860 -0.9772 0.0022 7 1 6.0872 -0.1427 0.0024 8 6 5.6112 -1.8320 -1.2466 9 6 5.6058 -1.8184 1.2330 10 8 4.7054 -1.9726 2.0309 11 7 6.8031 -2.3987 1.4478 12 6 7.0168 -3.2160 2.6446 13 6 8.4494 -3.7536 2.6459 14 7 8.6629 -4.5714 3.8425 15 6 9.8791 -5.1619 4.0600 16 1 10.6810 -5.0244 3.3497 17 6 10.0817 -5.9364 5.1941 18 7 9.1046 -6.1036 6.0599 19 14 11.7409 -6.7414 5.4912 20 1 12.6063 -5.8190 6.2696 21 1 11.5503 -8.0021 6.2526 22 1 12.3854 -7.0429 4.1878 23 16 2.5209 -1.4372 0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8669 2.0895 -0.0004 28 1 4.3720 1.6349 0.0105 29 1 5.4522 -1.2235 -2.1370 30 1 6.6318 -2.2145 -1.2459 31 1 4.9100 -2.6666 -1.2469 32 1 7.5233 -2.2751 0.8098 33 1 6.8563 -2.6069 3.5341 34 1 6.3160 -4.0508 2.6445 35 1 8.6096 -4.3629 1.7565 36 1 9.1506 -2.9192 2.6458 37 1 7.9428 -4.6947 4.4806 38 1 9.2462 -6.6445 6.8525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147769796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -3.848547 kcal Electronic energy + Delta-G solvation = -18945.480344 eV Core-core repulsion = 15914.566025 eV Total energy + Delta-G solvation = -3030.914319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90087 -37.98890 -35.72031 -34.41762 -33.78571 -31.49003 -30.91088 -27.74211 -26.72733 -24.45210 -23.42675 -22.72521 -21.48318 -20.23478 -19.08050 -17.63513 -17.07953 -16.39054 -15.80515 -15.47521 -15.05895 -14.54915 -14.25743 -14.14895 -13.74378 -13.59630 -13.26885 -13.18839 -12.89613 -12.77284 -12.57398 -12.11742 -12.00290 -11.76999 -11.49741 -11.38828 -11.11361 -10.83401 -10.81061 -10.66799 -10.12996 -9.86445 -9.67329 -8.99488 -8.83489 -8.53844 -8.39234 -7.00480 -5.80398 -3.11252 0.89841 1.56919 1.98596 2.60727 2.70304 3.30030 3.41705 3.46854 3.48666 4.33260 4.56151 4.67110 4.71691 4.81076 5.03238 5.07045 5.28886 5.31787 5.42256 5.45506 5.49265 5.51302 5.58330 5.69411 5.77202 5.82209 5.95503 6.04648 6.14232 6.17695 6.42479 6.47718 6.69348 6.73493 7.59380 7.64859 8.29919 8.37296 9.48386 10.03189 10.37877 11.42207 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042170 B = 0.002701 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.826033 B =10365.054821 C =10689.030505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.192 4.192 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.160 4.160 6 C -0.041 4.041 7 H 0.113 0.887 8 C -0.144 4.144 9 C 0.510 3.490 10 O -0.527 6.527 11 N -0.721 5.721 12 C 0.111 3.889 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 S 0.144 5.856 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 14.444 -17.716 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.310 4.310 3 C -0.175 4.175 4 C -0.165 4.165 5 C -0.278 4.278 6 C -0.064 4.064 7 H 0.131 0.869 8 C -0.202 4.202 9 C 0.294 3.706 10 O -0.402 6.402 11 N -0.373 5.373 12 C -0.012 4.012 13 C 0.017 3.983 14 N -0.375 5.375 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 S 0.410 5.590 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.144 12.679 -17.129 25.577 hybrid contribution 1.431 1.156 0.271 1.860 sum -12.713 13.835 -16.858 25.243 Atomic orbital electron populations 1.20295 0.88086 1.02784 1.02714 1.24597 1.00011 0.96542 1.09878 1.19912 0.92767 0.99084 1.05702 1.19977 0.96324 0.95472 1.04752 1.23848 0.97307 0.96642 1.10030 1.19827 0.92777 0.99109 0.94711 0.86899 1.21858 1.02843 0.99695 0.95771 1.20387 0.82678 0.80209 0.87339 1.90753 1.42116 1.60824 1.46539 1.45893 1.13657 1.51705 1.26003 1.21584 0.98592 0.94422 0.86645 1.20753 0.91632 0.94081 0.91847 1.42195 1.13947 1.58524 1.22817 1.19191 0.89834 1.23729 1.04775 0.91028 1.24790 0.97926 1.00834 0.97319 1.69669 1.31329 1.43892 1.12980 0.86145 0.83278 0.78728 0.77730 1.21617 1.21673 1.20701 1.84308 0.95405 1.08295 1.71014 0.91567 0.90699 0.90788 0.84729 0.84633 0.90940 0.91069 0.91806 0.76686 0.91288 0.91278 0.95809 0.95826 0.77994 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.01 0.37 -0.24 16 2 C -0.19 -2.04 6.51 -36.00 -0.23 -2.28 16 3 C -0.14 -1.48 10.05 -41.21 -0.41 -1.89 16 4 C -0.13 -1.44 10.01 -41.21 -0.41 -1.86 16 5 C -0.16 -1.89 4.60 -36.00 -0.17 -2.05 16 6 C -0.04 -0.43 3.10 -92.92 -0.29 -0.71 16 7 H 0.11 0.92 8.09 -51.93 -0.42 0.50 16 8 C -0.14 -1.19 9.01 37.16 0.33 -0.85 16 9 C 0.51 7.26 7.12 -10.99 -0.08 7.19 16 10 O -0.53 -9.71 15.25 5.56 0.08 -9.63 16 11 N -0.72 -9.72 5.45 -60.29 -0.33 -10.05 16 12 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 13 C 0.15 2.83 6.37 -4.04 -0.03 2.81 16 14 N -0.73 -18.63 5.60 -59.90 -0.34 -18.97 16 15 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 S 0.14 1.76 22.16 -107.50 -2.38 -0.63 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.48 7.57 -51.93 -0.39 0.09 16 31 H 0.06 0.60 8.00 -51.93 -0.42 0.18 16 32 H 0.40 4.13 7.89 -40.82 -0.32 3.81 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.46 7.67 -40.82 -0.31 10.15 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -33.78 337.45 -8.99 -42.77 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.64 Total: 7.21 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.18 Total: -5.44 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.06 Total: -56.68 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.38 Total: -0.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.78 -8.99 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147769796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.924 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds