Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33389 * 125.20569 * 2 1 4 4 C 1.38423 * 114.92327 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53916 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.92126 * 0.24541 * 4 3 2 7 7 C 1.50697 * 125.20130 * 179.75688 * 6 4 3 8 8 C 1.50700 * 109.47191 * 90.00429 * 7 6 4 9 9 O 1.21280 * 120.00080 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00004 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99938 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47161 * 179.97438 * 11 10 8 13 13 N 1.46499 * 109.47269 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00100 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00277 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99587 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00243 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47035 * 59.99859 * 18 16 14 20 20 H 1.48503 * 109.47412 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47204 * 299.99753 * 18 16 14 22 22 S 1.75883 * 125.20301 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46938 * 90.00347 * 1 2 3 24 24 H 1.08998 * 109.47344 * 210.00455 * 1 2 3 25 25 H 1.08997 * 109.46809 * 330.00353 * 1 2 3 26 26 H 1.08005 * 122.53851 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47152 * 90.02359 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.02460 * 5 4 3 29 29 H 1.09004 * 109.47113 * 210.02440 * 5 4 3 30 30 H 1.09001 * 109.46734 * 209.99863 * 7 6 4 31 31 H 1.09000 * 109.47376 * 329.99548 * 7 6 4 32 32 H 0.96997 * 119.99969 * 359.97438 * 10 8 7 33 33 H 1.09009 * 109.46800 * 299.99523 * 11 10 8 34 34 H 1.08998 * 109.46935 * 59.99615 * 11 10 8 35 35 H 1.09001 * 109.47437 * 300.00263 * 12 11 10 36 36 H 1.09005 * 109.46641 * 59.99767 * 12 11 10 37 37 H 0.97004 * 119.99747 * 0.02562 * 13 12 11 38 38 H 0.97001 * 120.00089 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9482 0.0001 6 6 3.9751 -0.4478 -0.0042 7 6 5.3861 -0.9770 -0.0099 8 6 5.8606 -1.1577 1.4090 9 8 5.1256 -0.8832 2.3338 10 7 7.1022 -1.6233 1.6502 11 6 7.5637 -1.7984 3.0296 12 6 8.9961 -2.3358 3.0238 13 7 9.4579 -2.5103 4.4031 14 6 10.7190 -2.9843 4.6482 15 1 11.3734 -3.2291 3.8247 16 6 11.1563 -3.1501 5.9552 17 7 10.3586 -2.8523 6.9588 18 14 12.8768 -3.7960 6.2895 19 1 13.8763 -2.8750 5.6909 20 1 13.0978 -3.8802 7.7556 21 1 13.0246 -5.1456 5.6879 22 16 2.5209 -1.4372 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8669 2.0895 -0.0004 27 1 4.9093 2.2151 1.0276 28 1 4.2565 2.8194 -0.5141 29 1 5.5621 1.6095 -0.5137 30 1 5.4121 -1.9365 -0.5266 31 1 6.0373 -0.2699 -0.5237 32 1 7.6902 -1.8425 0.9106 33 1 7.5374 -0.8387 3.5461 34 1 6.9127 -2.5056 3.5435 35 1 9.0221 -3.2954 2.5074 36 1 9.6473 -1.6288 2.5097 37 1 8.8699 -2.2908 5.1428 38 1 10.6643 -2.9678 7.8721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149405057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -7.043939 kcal Electronic energy + Delta-G solvation = -18836.096243 eV Core-core repulsion = 15805.043361 eV Total energy + Delta-G solvation = -3031.052881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77217 -38.35877 -35.68256 -33.81897 -33.56577 -31.39229 -30.47034 -28.46817 -27.66372 -25.03156 -23.42056 -21.77158 -21.47382 -20.47513 -18.42631 -17.45918 -17.14968 -16.93221 -15.58255 -15.42845 -14.89652 -14.52869 -14.38789 -14.19564 -13.64458 -13.42184 -13.29361 -13.21163 -13.16087 -12.88642 -12.71065 -12.29538 -11.78196 -11.60955 -11.53146 -11.34071 -11.10747 -10.82508 -10.79955 -10.76574 -10.15865 -9.89115 -9.70226 -8.98242 -8.81956 -8.55466 -8.32589 -7.00090 -5.79826 -3.10746 0.86070 1.51254 1.90039 2.55632 2.73518 3.35040 3.42449 3.47092 3.48423 4.46842 4.57647 4.61376 4.88937 4.94328 5.00925 5.13684 5.24674 5.25832 5.31004 5.46613 5.49835 5.55161 5.56385 5.62484 5.78014 5.84096 5.96206 6.03092 6.15243 6.30309 6.45939 6.49069 6.70146 6.74839 7.61988 7.64785 8.33736 8.38059 9.48830 10.03735 10.38413 11.42717 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041846 B = 0.002585 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.952001 B =10830.065731 C =10962.692874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.181 4.181 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.071 4.071 8 C 0.509 3.491 9 O -0.528 6.528 10 N -0.725 5.725 11 C 0.112 3.888 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 S 0.105 5.895 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.948 6.987 -19.759 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.165 4.165 4 C -0.103 4.103 5 C -0.154 4.154 6 C -0.280 4.280 7 C -0.112 4.112 8 C 0.294 3.706 9 O -0.403 6.403 10 N -0.377 5.377 11 C -0.012 4.012 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 S 0.371 5.629 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.618 5.533 -19.066 26.543 hybrid contribution 1.376 1.049 0.219 1.744 sum -16.242 6.582 -18.847 25.736 Atomic orbital electron populations 1.20316 0.87937 1.03165 1.02517 1.24392 0.99807 0.95883 1.09759 1.19870 0.92268 0.99131 1.05201 1.18711 0.94793 0.94020 1.02779 1.20534 0.96592 0.95657 1.02612 1.23473 0.97140 0.95967 1.11461 1.20146 0.91981 1.03475 0.95629 1.20406 0.81738 0.77526 0.90955 1.90740 1.54560 1.49324 1.45726 1.45925 1.15097 1.66950 1.09688 1.21569 0.96489 1.01667 0.81479 1.20753 0.90598 0.97279 0.89680 1.42189 1.15477 1.79252 1.00567 1.19147 0.90479 1.36088 0.91879 0.91081 1.24787 0.98482 1.02063 0.95521 1.69660 1.35866 1.54124 0.98255 0.86216 0.83967 0.78725 0.76933 1.21181 1.21602 1.21178 1.84133 0.96210 1.09189 1.73361 0.90881 0.91345 0.90612 0.84581 0.90918 0.91627 0.91694 0.87984 0.87062 0.76696 0.91329 0.91357 0.95827 0.95817 0.78001 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.38 36.01 0.37 -0.22 16 2 C -0.18 -1.89 6.51 -36.00 -0.23 -2.13 16 3 C -0.13 -1.43 9.85 -41.21 -0.41 -1.84 16 4 C -0.09 -1.04 5.80 -106.25 -0.62 -1.66 16 5 C -0.09 -0.89 9.87 36.01 0.36 -0.54 16 6 C -0.16 -1.93 5.00 -36.00 -0.18 -2.11 16 7 C -0.07 -0.71 5.87 -29.04 -0.17 -0.89 16 8 C 0.51 7.21 7.82 -10.98 -0.09 7.12 16 9 O -0.53 -9.86 16.03 5.56 0.09 -9.77 16 10 N -0.72 -9.72 5.56 -60.29 -0.33 -10.05 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 C 0.15 2.84 6.37 -4.04 -0.03 2.81 16 13 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 14 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 S 0.10 1.20 23.31 -107.50 -2.51 -1.31 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.06 0.53 6.60 -51.93 -0.34 0.18 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.11 0.84 6.64 -51.93 -0.34 0.50 16 32 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 33 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.49 7.67 -40.82 -0.31 10.17 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -34.24 338.16 -9.09 -43.33 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.54 Total: 7.11 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.26 Total: -4.99 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.05 Total: -56.78 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.24 -9.09 -43.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149405057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.288 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds