Wall clock time and date at job start Tue Mar 31 2020 05:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33389 * 125.20569 * 2 1 4 4 C 1.38423 * 114.92327 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53916 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.92126 * 0.24541 * 4 3 2 7 7 C 1.50697 * 125.20130 * 179.75688 * 6 4 3 8 8 C 1.50700 * 109.47191 * 90.00429 * 7 6 4 9 9 O 1.21280 * 120.00080 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00004 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99938 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47161 * 179.97438 * 11 10 8 13 13 N 1.46499 * 109.47269 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00100 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00277 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99587 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00243 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47035 * 59.99859 * 18 16 14 20 20 H 1.48503 * 109.47412 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47204 * 299.99753 * 18 16 14 22 22 S 1.75883 * 125.20301 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46938 * 90.00347 * 1 2 3 24 24 H 1.08998 * 109.47344 * 210.00455 * 1 2 3 25 25 H 1.08997 * 109.46809 * 330.00353 * 1 2 3 26 26 H 1.08005 * 122.53851 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47152 * 90.02359 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.02460 * 5 4 3 29 29 H 1.09004 * 109.47113 * 210.02440 * 5 4 3 30 30 H 1.09001 * 109.46734 * 209.99863 * 7 6 4 31 31 H 1.09000 * 109.47376 * 329.99548 * 7 6 4 32 32 H 0.96997 * 119.99969 * 359.97438 * 10 8 7 33 33 H 1.09009 * 109.46800 * 299.99523 * 11 10 8 34 34 H 1.08998 * 109.46935 * 59.99615 * 11 10 8 35 35 H 1.09001 * 109.47437 * 300.00263 * 12 11 10 36 36 H 1.09005 * 109.46641 * 59.99767 * 12 11 10 37 37 H 0.97004 * 119.99747 * 0.02562 * 13 12 11 38 38 H 0.97001 * 120.00089 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9482 0.0001 6 6 3.9751 -0.4478 -0.0042 7 6 5.3861 -0.9770 -0.0099 8 6 5.8606 -1.1577 1.4090 9 8 5.1256 -0.8832 2.3338 10 7 7.1022 -1.6233 1.6502 11 6 7.5637 -1.7984 3.0296 12 6 8.9961 -2.3358 3.0238 13 7 9.4579 -2.5103 4.4031 14 6 10.7190 -2.9843 4.6482 15 1 11.3734 -3.2291 3.8247 16 6 11.1563 -3.1501 5.9552 17 7 10.3586 -2.8523 6.9588 18 14 12.8768 -3.7960 6.2895 19 1 13.8763 -2.8750 5.6909 20 1 13.0978 -3.8802 7.7556 21 1 13.0246 -5.1456 5.6879 22 16 2.5209 -1.4372 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8669 2.0895 -0.0004 27 1 4.9093 2.2151 1.0276 28 1 4.2565 2.8194 -0.5141 29 1 5.5621 1.6095 -0.5137 30 1 5.4121 -1.9365 -0.5266 31 1 6.0373 -0.2699 -0.5237 32 1 7.6902 -1.8425 0.9106 33 1 7.5374 -0.8387 3.5461 34 1 6.9127 -2.5056 3.5435 35 1 9.0221 -3.2954 2.5074 36 1 9.6473 -1.6288 2.5097 37 1 8.8699 -2.2908 5.1428 38 1 10.6643 -2.9678 7.8721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149405057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:45 Heat of formation + Delta-G solvation = -30.283232 kcal Electronic energy + Delta-G solvation = -18837.103974 eV Core-core repulsion = 15805.043361 eV Total energy + Delta-G solvation = -3032.060613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89304 -39.22814 -37.30558 -35.47619 -34.37009 -33.17792 -31.49406 -29.36712 -29.04520 -26.19901 -25.10700 -23.09874 -22.51670 -21.63593 -19.43213 -19.14664 -18.20180 -18.02870 -16.87487 -16.68882 -16.48640 -15.70337 -15.44072 -15.39524 -15.06468 -14.93594 -14.42629 -14.25590 -14.01378 -13.95133 -13.51314 -13.19498 -13.04364 -12.91895 -12.62325 -12.55729 -12.48491 -12.34246 -12.19224 -12.12151 -11.87192 -11.58464 -11.02306 -10.98242 -10.14004 -9.37666 -9.16293 -9.07471 -7.97290 -5.28985 0.03624 0.71320 1.08581 1.48080 1.52015 1.58117 1.62400 1.72287 2.21452 2.58649 3.36791 3.62517 3.90017 3.92549 4.04408 4.16594 4.20594 4.24277 4.33889 4.47643 4.57458 4.57973 4.61732 4.72348 4.74981 4.84395 5.02470 5.04030 5.13098 5.15324 5.27871 5.38446 5.48481 5.52377 5.68966 6.23322 6.55657 7.25510 7.29354 8.01440 8.24194 9.26324 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041846 B = 0.002585 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.952001 B =10830.065731 C =10962.692874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.181 4.181 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.094 4.094 6 C -0.183 4.183 7 C -0.061 4.061 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.129 3.871 12 C 0.149 3.851 13 N -0.748 5.748 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.981 3.019 19 H -0.274 1.274 20 H -0.297 1.297 21 H -0.275 1.275 22 S 0.074 5.926 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.419 0.581 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.373 0.627 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.455 7.248 -22.049 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.299 4.299 3 C -0.180 4.180 4 C -0.113 4.113 5 C -0.153 4.153 6 C -0.300 4.300 7 C -0.103 4.103 8 C 0.296 3.704 9 O -0.457 6.457 10 N -0.364 5.364 11 C 0.004 3.996 12 C 0.023 3.977 13 N -0.392 5.392 14 C -0.380 4.380 15 H 0.102 0.898 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.809 3.191 19 H -0.200 1.200 20 H -0.224 1.224 21 H -0.201 1.201 22 S 0.340 5.660 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.172 0.828 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.256 0.744 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.105 5.788 -21.449 28.038 hybrid contribution 1.133 1.009 0.858 1.743 sum -15.972 6.797 -20.591 26.932 Atomic orbital electron populations 1.20432 0.85954 1.03817 1.03795 1.24810 1.01174 0.95096 1.08772 1.20176 0.92268 1.00121 1.05435 1.19093 0.95661 0.94508 1.02059 1.20577 0.96869 0.95866 1.02000 1.23718 0.97668 0.96201 1.12455 1.20205 0.91572 1.05693 0.92785 1.21149 0.81010 0.76023 0.92246 1.90724 1.55873 1.51423 1.47679 1.45718 1.15485 1.66632 1.08587 1.21108 0.94980 1.00007 0.83505 1.20853 0.91728 0.98237 0.86911 1.42444 1.14879 1.79252 1.02602 1.19627 0.91413 1.34707 0.92295 0.89814 1.25700 1.02619 1.03239 0.95500 1.69837 1.37899 1.56150 0.98353 0.85111 0.79288 0.78518 0.76209 1.20016 1.22350 1.20066 1.84165 0.97323 1.10578 1.73963 0.89211 0.91218 0.89381 0.82765 0.92517 0.89806 0.90247 0.85435 0.83943 0.74371 0.93073 0.93310 0.94435 0.94268 0.79548 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.38 71.24 0.74 -0.34 16 2 C -0.18 -3.61 6.51 24.59 0.16 -3.45 16 3 C -0.15 -3.02 9.85 21.22 0.21 -2.81 16 4 C -0.10 -2.18 5.80 -20.92 -0.12 -2.30 16 5 C -0.09 -1.61 9.87 71.24 0.70 -0.91 16 6 C -0.18 -4.12 5.00 24.59 0.12 -3.99 16 7 C -0.06 -1.11 5.87 29.10 0.17 -0.94 16 8 C 0.51 13.85 7.82 87.66 0.69 14.54 16 9 O -0.58 -21.81 16.03 -3.03 -0.05 -21.86 16 10 N -0.71 -17.95 5.56 -463.05 -2.57 -20.52 16 11 C 0.13 4.44 5.79 86.38 0.50 4.94 16 12 C 0.15 5.67 6.37 86.38 0.55 6.22 16 13 N -0.75 -38.33 5.60 -343.45 -1.92 -40.26 16 14 C -0.25 -13.80 9.99 84.03 0.84 -12.97 16 15 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 16 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 17 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 18 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 S 0.07 1.65 23.31 -56.49 -1.32 0.33 16 23 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.08 1.09 6.60 -2.38 -0.02 1.07 16 30 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.14 1.66 6.64 -2.39 -0.02 1.65 16 32 H 0.42 7.29 8.47 -92.71 -0.79 6.50 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 38 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.71 338.16 1.06 -73.66 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.42 Total: 27.05 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.03 Total: -6.06 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.21 Total: -120.93 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -74.71 1.06 -73.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149405057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.373 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds