Wall clock time and date at job start Tue Mar 31 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99513 * 2 1 4 4 H 1.48495 * 109.47130 * 269.99713 * 3 2 1 5 5 H 1.48497 * 109.47308 * 29.99932 * 3 2 1 6 6 H 1.48504 * 109.46494 * 149.99762 * 3 2 1 7 7 C 1.38812 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00073 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00055 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47243 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99588 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.97001 * 120.00314 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99973 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47239 * 60.00131 * 10 9 7 26 26 H 1.08991 * 109.47167 * 299.99905 * 10 9 7 27 27 H 1.09008 * 109.47046 * 60.00138 * 11 10 9 28 28 H 1.09003 * 109.47659 * 299.99960 * 11 10 9 29 29 H 0.96992 * 119.99723 * 0.02562 * 12 11 10 30 30 H 1.08997 * 109.47561 * 59.99923 * 15 13 12 31 31 H 1.09000 * 109.46976 * 299.99617 * 15 13 12 32 32 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 33 33 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 34 34 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 35 35 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 36 36 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 37 37 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 7 1.7966 -6.0884 0.0006 13 6 1.1227 -7.2556 0.0005 14 8 -0.0901 -7.2557 0.0013 15 6 1.8763 -8.5607 0.0004 16 6 0.8821 -9.7236 -0.0004 17 6 1.6472 -11.0486 -0.0011 18 6 0.6679 -12.1941 -0.0012 19 6 0.1680 -12.7782 -1.0913 20 6 -0.7166 -13.8139 -0.8444 21 6 -0.9346 -14.0713 0.4462 22 16 0.0153 -12.9704 1.4358 23 1 -0.4850 0.8400 -0.0004 24 1 0.3557 -2.3881 0.0005 25 1 2.6849 -3.7145 0.8906 26 1 2.6848 -3.7144 -0.8894 27 1 0.4370 -4.7621 -0.8887 28 1 0.4377 -4.7618 0.8914 29 1 2.7665 -6.0883 0.0002 30 1 2.5029 -8.6185 0.8904 31 1 2.5029 -8.6183 -0.8896 32 1 0.2558 -9.6657 -0.8905 33 1 0.2550 -9.6662 0.8894 34 1 2.2737 -11.1068 0.8890 35 1 2.2739 -11.1058 -0.8911 36 1 0.4329 -12.4664 -2.0907 37 1 -1.1934 -14.3719 -1.6366 38 1 -1.5908 -14.8407 0.8254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150309486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:48 Heat of formation + Delta-G solvation = -11.209273 kcal Electronic energy + Delta-G solvation = -18227.034315 eV Core-core repulsion = 15195.800811 eV Total energy + Delta-G solvation = -3031.233504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63126 -38.26040 -35.81680 -34.88175 -33.81724 -31.39693 -30.62740 -28.05124 -26.64738 -24.13121 -23.31007 -21.93533 -21.41159 -20.13160 -19.52969 -17.62558 -17.24730 -16.65434 -16.08318 -15.73080 -15.44631 -14.81628 -14.57635 -13.87631 -13.82868 -13.75511 -13.18976 -13.10874 -12.89244 -12.84794 -12.70409 -12.00860 -11.90129 -11.64695 -11.38889 -11.11050 -11.08997 -10.85425 -10.82614 -10.80662 -10.12940 -9.86985 -9.66539 -8.98410 -8.91217 -8.81427 -8.74725 -7.00065 -5.80107 -3.10957 0.71955 1.35804 1.72990 2.46900 2.75668 3.29476 3.41859 3.46940 3.48830 4.37560 4.56423 4.66800 4.70591 4.78722 4.92161 5.07698 5.21016 5.30904 5.32839 5.39279 5.46505 5.49654 5.58133 5.75876 5.78916 5.93060 5.96443 6.02159 6.09545 6.15894 6.22248 6.50172 6.70289 6.75546 7.64111 7.65281 8.35160 8.38025 9.48632 10.03624 10.38292 11.42434 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.060539 B = 0.002005 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.404193 B =13962.585720 C =14078.303258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.725 5.725 13 C 0.507 3.493 14 O -0.542 6.542 15 C -0.140 4.140 16 C -0.099 4.099 17 C -0.051 4.051 18 C -0.166 4.166 19 C -0.144 4.144 20 C -0.132 4.132 21 C -0.220 4.220 22 S 0.094 5.906 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -29.453 0.026 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.377 5.377 13 C 0.293 3.707 14 O -0.419 6.419 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.090 4.090 18 C -0.283 4.283 19 C -0.174 4.174 20 C -0.163 4.163 21 C -0.355 4.355 22 S 0.358 5.642 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.621 -29.120 1.597 29.388 hybrid contribution 0.344 0.714 -1.531 1.724 sum 3.965 -28.406 0.065 28.681 Atomic orbital electron populations 1.69669 1.05152 1.25857 1.57176 1.24793 0.95583 0.97853 1.02685 0.86139 0.78593 0.83574 0.77541 1.21628 1.21679 1.20708 1.19194 0.91037 0.83870 1.43437 0.91024 1.42196 1.06018 0.99593 1.89688 1.20754 0.93502 0.85722 0.98357 1.21569 0.95452 0.81862 1.02490 1.45979 1.10408 1.06108 1.75180 1.20636 0.88319 0.85485 0.76239 1.90721 1.14102 1.87735 1.49387 1.21675 0.99445 0.92446 1.04474 1.21351 0.97344 0.90680 1.04390 1.20220 0.95090 0.90286 1.03409 1.24524 1.05178 1.03043 0.95595 1.20146 0.99891 0.97926 0.99437 1.20182 1.00361 0.99329 0.96418 1.25598 1.07283 1.05728 0.96899 1.84345 1.41001 1.28970 1.09915 0.93350 0.78004 0.95838 0.95834 0.91377 0.91366 0.76692 0.88833 0.88786 0.90678 0.90856 0.90602 0.89760 0.84293 0.84399 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.67 5.60 -59.92 -0.34 -19.01 16 10 C 0.14 2.84 6.37 -4.05 -0.03 2.81 16 11 C 0.11 1.90 5.79 -4.04 -0.02 1.88 16 12 N -0.73 -9.63 5.56 -60.29 -0.33 -9.97 16 13 C 0.51 6.90 7.83 -10.98 -0.09 6.81 16 14 O -0.54 -9.86 15.98 5.56 0.09 -9.77 16 15 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 16 C -0.10 -0.92 4.49 -26.73 -0.12 -1.04 16 17 C -0.05 -0.36 5.71 -27.88 -0.16 -0.52 16 18 C -0.17 -1.43 5.76 -36.00 -0.21 -1.64 16 19 C -0.14 -1.21 10.05 -41.21 -0.41 -1.62 16 20 C -0.13 -1.04 10.18 -41.21 -0.42 -1.46 16 21 C -0.22 -1.71 11.23 29.04 0.33 -1.39 16 22 S 0.09 0.80 23.33 -107.50 -2.51 -1.71 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.39 10.48 7.67 -40.82 -0.31 10.16 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.07 0.81 8.10 -51.92 -0.42 0.39 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -33.87 340.79 -9.48 -43.35 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.70 Total: 7.31 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.53 Total: -4.99 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.05 Total: -56.64 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.87 -9.48 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150309486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.143 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds