Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 N 1.46499 * 109.47012 * 180.02562 * 12 11 10 14 14 C 1.36936 * 120.00002 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00140 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00367 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00444 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47180 * 90.00207 * 18 16 14 20 20 H 1.48495 * 109.47303 * 210.00433 * 18 16 14 21 21 H 1.48502 * 109.47143 * 330.00483 * 18 16 14 22 22 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 23 23 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 24 24 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 25 25 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 26 26 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 27 27 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 29 29 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 31 31 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 32 32 H 0.97005 * 119.99680 * 359.97438 * 10 8 7 33 33 H 1.08998 * 109.47245 * 300.00495 * 11 10 8 34 34 H 1.09002 * 109.47021 * 59.99873 * 11 10 8 35 35 H 1.09001 * 109.47375 * 300.00051 * 12 11 10 36 36 H 1.09002 * 109.47045 * 60.00127 * 12 11 10 37 37 H 0.97000 * 120.00420 * 359.97438 * 13 12 11 38 38 H 0.96996 * 120.00586 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 6 7.2761 -1.6844 1.4395 9 8 7.8429 -1.8977 0.3888 10 7 7.9079 -1.9212 2.6062 11 6 9.2795 -2.4357 2.6052 12 6 9.7583 -2.6144 4.0473 13 7 11.1302 -3.1283 4.0462 14 6 11.7722 -3.3688 5.2316 15 1 11.2673 -3.1792 6.1674 16 6 13.0719 -3.8562 5.2307 17 7 13.6874 -4.0869 4.0904 18 14 13.9479 -4.1836 6.8477 19 1 13.6884 -5.5813 7.2772 20 1 15.4084 -3.9838 6.6688 21 1 13.4432 -3.2460 7.8828 22 16 2.5211 -1.4371 -0.0068 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.8668 2.0895 0.0004 27 1 4.3721 1.6351 -0.0002 28 1 6.0384 -0.2714 -0.5162 29 1 5.4132 -1.9380 -0.5152 30 1 5.8377 -0.1946 1.9542 31 1 5.2125 -1.8611 1.9552 32 1 7.4543 -1.7509 3.4466 33 1 9.3068 -3.3965 2.0912 34 1 9.9319 -1.7300 2.0909 35 1 9.7311 -1.6533 4.5609 36 1 9.1060 -3.3199 4.5619 37 1 11.5836 -3.2990 3.2059 38 1 14.5957 -4.4271 4.0896 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153778719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -11.604863 kcal Electronic energy + Delta-G solvation = -18275.156479 eV Core-core repulsion = 15243.905822 eV Total energy + Delta-G solvation = -3031.250658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68201 -38.32664 -35.77090 -34.29416 -33.83179 -31.54653 -31.03189 -28.25751 -26.73770 -24.26197 -23.39702 -22.55717 -21.45296 -20.18644 -19.08218 -17.45582 -17.27568 -16.67242 -15.76874 -15.57150 -15.40232 -14.57442 -14.49729 -14.33221 -13.84109 -13.48891 -13.37010 -13.22969 -13.01566 -12.87919 -12.62582 -12.39140 -11.89113 -11.84379 -11.43047 -11.23916 -11.11374 -10.90675 -10.82988 -10.80940 -10.13205 -9.89766 -9.70137 -8.99195 -8.82983 -8.74086 -8.70520 -7.00204 -5.80208 -3.11050 0.69325 1.31886 1.72449 2.44833 2.71888 3.28026 3.41887 3.46991 3.48837 4.44206 4.53698 4.58968 4.73572 4.84322 4.88539 5.03415 5.11486 5.21660 5.31195 5.37879 5.49416 5.53851 5.55114 5.58903 5.77564 5.85169 5.93721 5.96051 6.02006 6.14934 6.26594 6.48768 6.69811 6.74167 7.61114 7.65158 8.31496 8.37523 9.48563 10.03408 10.38120 11.42329 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.052635 B = 0.002133 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.834603 B =13123.710773 C =13300.751771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.186 4.186 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.171 4.171 6 C -0.034 4.034 7 C -0.135 4.135 8 C 0.509 3.491 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.110 3.890 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 S 0.096 5.904 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.400 0.600 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.446 9.860 -7.862 30.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.303 4.303 3 C -0.169 4.169 4 C -0.167 4.167 5 C -0.289 4.289 6 C -0.073 4.073 7 C -0.175 4.175 8 C 0.295 3.705 9 O -0.420 6.420 10 N -0.375 5.375 11 C -0.014 4.014 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 S 0.360 5.640 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.257 8.136 -8.454 29.675 hybrid contribution 0.781 1.358 1.082 1.904 sum -26.476 9.494 -7.372 29.077 Atomic orbital electron populations 1.20327 0.87944 1.03108 1.02684 1.24493 0.99926 0.95855 1.10017 1.20066 0.92941 0.99162 1.04702 1.20114 0.96237 0.95990 1.04321 1.24498 0.98573 0.96412 1.09370 1.19873 0.88701 1.02792 0.95973 1.21675 0.93800 1.03362 0.98710 1.20566 0.88144 0.77928 0.83853 1.90717 1.67964 1.52137 1.31215 1.45965 1.16349 1.66750 1.08449 1.21578 0.81059 0.99521 0.99205 1.20758 0.88540 0.97016 0.92049 1.42193 1.09962 1.78500 1.06827 1.19194 0.95754 1.36736 0.85860 0.91027 1.24790 0.97172 1.01905 0.97026 1.69666 1.13204 1.50984 1.23995 0.86140 0.78949 0.78012 0.82751 1.21628 1.21679 1.20710 1.84341 0.96635 1.09449 1.73548 0.90826 0.91345 0.90593 0.84524 0.84264 0.89017 0.89873 0.88538 0.88768 0.76624 0.91311 0.91307 0.95812 0.95819 0.78001 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.01 0.37 -0.07 16 2 C -0.19 -1.47 6.51 -36.00 -0.23 -1.71 16 3 C -0.14 -1.10 10.05 -41.21 -0.41 -1.52 16 4 C -0.14 -1.17 10.05 -41.21 -0.41 -1.59 16 5 C -0.17 -1.58 5.76 -36.00 -0.21 -1.79 16 6 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 7 C -0.13 -1.26 5.68 -27.88 -0.16 -1.42 16 8 C 0.51 6.92 7.83 -10.98 -0.09 6.83 16 9 O -0.54 -9.65 15.98 5.56 0.09 -9.56 16 10 N -0.72 -9.66 5.56 -60.30 -0.33 -9.99 16 11 C 0.11 1.89 5.79 -4.05 -0.02 1.87 16 12 C 0.14 2.83 6.37 -4.04 -0.03 2.81 16 13 N -0.73 -18.64 5.60 -59.91 -0.34 -18.97 16 14 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 S 0.10 0.84 23.31 -107.50 -2.51 -1.67 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 27 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.44 7.67 -40.82 -0.31 10.13 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -33.27 341.17 -9.52 -42.79 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.70 Total: 7.08 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.58 Total: -4.51 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.05 Total: -56.58 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.27 -9.52 -42.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153778719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds