Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35516 * 116.99484 * 2 1 4 4 N 1.32755 * 120.47093 * 0.02562 * 3 2 1 5 5 C 1.32456 * 120.64698 * 180.02562 * 4 3 2 6 6 N 1.38397 * 119.18836 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99959 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 N 1.32497 * 121.62143 * 0.26438 * 5 4 3 19 19 C 1.32428 * 120.88807 * 359.47670 * 18 5 4 20 20 C 1.38246 * 119.26650 * 0.50833 * 19 18 5 21 21 N 1.48019 * 120.74614 * 179.77927 * 20 19 18 22 22 O 1.21803 * 119.99708 * 359.96875 * 21 20 19 23 23 O 1.21794 * 119.99990 * 179.97438 * 21 20 19 24 24 H 1.08999 * 109.46804 * 299.99961 * 1 2 3 25 25 H 1.09001 * 109.47082 * 59.99926 * 1 2 3 26 26 H 1.08998 * 109.46784 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99620 * 0.02562 * 6 5 4 28 28 H 1.09002 * 109.47391 * 59.99901 * 7 6 5 29 29 H 1.09001 * 109.46813 * 299.99957 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 31 31 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 32 32 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 33 33 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 34 34 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.36647 * 180.26152 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3302 2.3267 0.0005 5 6 1.9278 3.5088 0.0000 6 7 1.1541 4.6563 0.0000 7 6 1.7964 5.9729 -0.0011 8 6 0.7236 7.0637 -0.0002 9 6 1.3945 8.4388 -0.0020 10 6 0.3379 9.5133 -0.0017 11 1 -0.7077 9.2425 -0.0008 12 6 0.7057 10.8421 -0.0027 13 7 1.9789 11.1718 -0.0033 14 14 -0.6040 12.1740 -0.0016 15 1 -1.4489 12.0364 1.2119 16 1 0.0471 13.5085 -0.0035 17 1 -1.4516 12.0355 -1.2131 18 7 3.2481 3.6198 -0.0062 19 6 4.0208 2.5442 -0.0018 20 6 3.4356 1.2917 -0.0013 21 7 4.2679 0.0677 -0.0013 22 8 5.4826 0.1572 -0.0024 23 8 3.7380 -1.0290 -0.0003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1864 4.5887 0.0008 28 1 2.4169 6.0738 -0.8916 29 1 2.4182 6.0745 0.8884 30 1 0.1015 6.9623 -0.8895 31 1 0.1035 6.9628 0.8904 32 1 2.0168 8.5406 0.8871 33 1 2.0144 8.5396 -0.8929 34 1 2.2377 12.1066 -0.0035 35 1 5.0961 2.6445 -0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = 5.543384 kcal Electronic energy + Delta-G solvation = -21084.856743 eV Core-core repulsion = 17508.056475 eV Total energy + Delta-G solvation = -3576.800268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.40019 -41.34387 -39.28030 -36.82247 -36.43376 -34.19239 -33.64362 -32.35113 -30.96527 -28.13178 -27.31043 -25.91587 -24.55550 -23.52416 -22.55818 -20.76327 -19.57950 -19.23877 -19.01178 -18.08393 -17.69715 -16.63957 -16.55352 -16.49187 -15.51043 -15.39057 -14.72371 -14.54517 -14.43570 -14.28027 -12.88790 -12.56667 -12.44488 -12.34367 -12.07911 -12.01674 -11.53617 -11.33547 -11.09722 -11.02322 -10.96739 -10.94155 -10.71004 -10.26543 -9.97283 -9.93274 -9.65806 -9.29207 -8.73325 -8.48435 -6.13316 -4.17190 -0.22569 0.58619 1.23037 1.32993 2.09134 2.49515 3.17494 3.24371 3.29944 3.31324 3.43934 3.96518 4.09883 4.34111 4.38605 4.81092 4.85509 5.14850 5.21074 5.22791 5.32889 5.46763 5.85307 6.03217 6.18559 6.27000 6.32484 6.49805 6.57974 6.75894 6.94435 7.47603 7.58115 7.67069 7.70981 7.83765 8.23842 8.88730 9.47850 10.97802 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.002761 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.556593 B =10139.181502 C =10885.686555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.267 6.267 3 C 0.469 3.531 4 N -0.619 5.619 5 C 0.625 3.375 6 N -0.658 5.658 7 C 0.121 3.879 8 C -0.124 4.124 9 C 0.027 3.973 10 C -0.527 4.527 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 N -0.563 5.563 19 C 0.297 3.703 20 C -0.247 4.247 21 N 0.061 4.939 22 O -0.184 6.184 23 O -0.154 6.154 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.420 0.580 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -19.987 0.019 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.167 6.167 3 C 0.275 3.725 4 N -0.362 5.362 5 C 0.269 3.731 6 N -0.287 5.287 7 C -0.001 4.001 8 C -0.162 4.162 9 C -0.011 4.011 10 C -0.565 4.565 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.290 5.290 19 C 0.125 3.875 20 C -0.343 4.343 21 N 0.575 4.425 22 O -0.392 6.392 23 O -0.371 6.371 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.258 0.742 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.664 -18.451 0.013 18.526 hybrid contribution -0.713 -0.112 0.005 0.722 sum -2.378 -18.563 0.018 18.715 Atomic orbital electron populations 1.23175 0.75584 1.04315 1.03322 1.86558 1.24222 1.21905 1.84033 1.19245 0.86536 0.85684 0.81001 1.67854 1.39119 0.97073 1.32203 1.19367 0.85741 0.85303 0.82725 1.45092 1.09179 1.02807 1.71609 1.22013 0.97052 0.77880 1.03169 1.21966 0.96949 0.95933 1.01328 1.19008 0.96055 0.88193 0.97827 1.21127 0.92876 0.90949 1.51583 0.92666 1.25017 0.95367 0.98861 0.95071 1.69944 1.15194 1.17869 1.50113 0.86627 0.81668 0.80889 0.78642 1.20201 1.21177 1.20207 1.68474 1.03835 1.30933 1.25806 1.22965 1.01818 0.83194 0.79564 1.21712 0.89238 0.88554 1.34804 1.42829 1.00851 1.01669 0.97163 1.94527 0.95593 1.93658 1.55443 1.94570 1.76003 1.12964 1.53530 0.91346 0.91357 0.87278 0.74178 0.90527 0.90545 0.92396 0.92392 0.96104 0.96107 0.92733 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.41 101.05 1.05 1.27 16 2 O -0.27 -2.98 8.65 -39.73 -0.34 -3.33 16 3 C 0.47 5.74 7.51 -16.72 -0.13 5.62 16 4 N -0.62 -7.49 9.40 -13.99 -0.13 -7.62 16 5 C 0.63 8.00 8.42 -322.86 -2.72 5.28 16 6 N -0.66 -8.07 5.70 -62.32 -0.36 -8.43 16 7 C 0.12 1.74 5.65 -4.04 -0.02 1.72 16 8 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.53 -13.96 9.11 -34.44 -0.31 -14.27 16 11 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 14 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 N -0.56 -7.20 9.58 -14.00 -0.13 -7.34 16 19 C 0.30 3.30 10.81 -17.29 -0.19 3.12 16 20 C -0.25 -3.06 6.91 -79.51 -0.55 -3.61 16 21 N 0.06 0.83 4.45 34.17 0.15 0.98 16 22 O -0.18 -2.52 18.54 -29.46 -0.55 -3.07 16 23 O -0.15 -2.25 17.39 -36.31 -0.63 -2.88 16 24 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.42 4.44 8.59 -40.82 -0.35 4.09 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.20 1.63 7.69 -52.49 -0.40 1.23 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -30.36 317.93 -8.82 -39.19 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.10 Total: -1.91 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.24 Total: -1.14 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.27 Total: -47.35 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.52 Total: -9.28 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.36 -8.82 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.733 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds