Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99680 * 2 1 4 4 H 1.48499 * 109.47059 * 240.00285 * 3 2 1 5 5 H 1.48497 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47060 * 119.99922 * 3 2 1 7 7 C 1.38802 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00297 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47544 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47605 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47082 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99536 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99950 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99432 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.46526 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 14 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 0.96993 * 119.99968 * 0.02562 * 1 2 3 24 24 H 0.97005 * 120.00169 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.46866 * 60.00346 * 10 9 7 26 26 H 1.08999 * 109.47739 * 300.00749 * 10 9 7 27 27 H 1.09005 * 109.46925 * 60.00176 * 11 10 9 28 28 H 1.09007 * 109.47085 * 300.00711 * 11 10 9 29 29 H 1.09001 * 109.46674 * 60.00106 * 12 11 10 30 30 H 1.08994 * 109.46989 * 300.00233 * 12 11 10 31 31 H 0.96995 * 120.00320 * 0.02562 * 13 12 11 32 32 H 1.08994 * 109.46984 * 60.00404 * 16 14 13 33 33 H 1.08994 * 109.47395 * 299.99944 * 16 14 13 34 34 H 1.08994 * 109.47301 * 60.00425 * 17 16 14 35 35 H 1.09003 * 109.46866 * 299.99861 * 17 16 14 36 36 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 37 37 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 6 1.0642 -4.8196 -0.0021 12 6 1.8292 -6.1446 -0.0026 13 7 0.8772 -7.2582 -0.0036 14 6 1.3266 -8.5289 -0.0047 15 8 2.5189 -8.7504 -0.0045 16 6 0.3472 -9.6743 -0.0052 17 6 1.1124 -10.9993 -0.0058 18 6 0.1331 -12.1448 -0.0069 19 6 -0.3510 -12.7115 1.1595 20 6 -1.2096 -13.7167 0.9818 21 16 -1.4513 -13.9888 -0.7390 22 6 -0.3324 -12.6898 -1.1319 23 1 -0.4850 0.8400 -0.0004 24 1 0.3557 -2.3881 -0.0005 25 1 2.6856 -3.7148 0.8879 26 1 2.6844 -3.7140 -0.8921 27 1 0.4372 -4.7614 -0.8918 28 1 0.4377 -4.7625 0.8882 29 1 2.4558 -6.2026 0.8874 30 1 2.4558 -6.2020 -0.8926 31 1 -0.0765 -7.0810 -0.0042 32 1 -0.2797 -9.6159 -0.8949 33 1 -0.2790 -9.6173 0.8850 34 1 1.7390 -11.0575 0.8840 35 1 1.7389 -11.0566 -0.8960 36 1 -0.0561 -12.3657 2.1393 37 1 -1.6871 -14.2750 1.7734 38 1 -0.0666 -12.3779 -2.1312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159944468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -11.076068 kcal Electronic energy + Delta-G solvation = -18228.892022 eV Core-core repulsion = 15197.664295 eV Total energy + Delta-G solvation = -3031.227727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.89102 -38.54120 -36.06386 -34.34059 -33.15275 -31.93883 -29.90308 -29.16419 -26.16190 -24.70308 -22.99257 -22.24882 -21.21531 -20.15861 -19.03722 -17.98481 -17.26443 -16.77464 -16.03407 -15.95273 -15.44170 -14.86759 -14.60557 -13.97889 -13.64415 -13.48659 -13.28878 -13.26585 -13.01400 -12.78397 -12.30601 -12.27156 -12.12300 -11.63290 -11.29998 -11.04435 -10.96197 -10.91359 -10.79588 -10.61551 -10.13599 -9.89649 -9.69614 -9.14928 -9.05265 -8.88100 -8.71316 -6.94244 -5.77692 -3.06746 0.66094 1.32529 1.64691 2.32742 2.59427 3.19307 3.44393 3.48385 3.49699 4.48025 4.57415 4.58841 4.77522 4.82146 4.92085 5.10854 5.20051 5.22797 5.30585 5.34078 5.48602 5.56926 5.62592 5.71663 5.82917 5.99098 6.05984 6.10055 6.18436 6.18677 6.31416 6.46081 6.78231 6.82495 7.46627 7.69117 8.18012 8.41346 9.52293 10.09363 10.44059 11.45241 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.053498 B = 0.001941 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.262845 B =14420.171568 C =14671.393800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.122 3.878 13 N -0.729 5.729 14 C 0.509 3.491 15 O -0.544 6.544 16 C -0.134 4.134 17 C -0.045 4.045 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.212 4.212 21 S 0.086 5.914 22 C -0.210 4.210 23 H 0.256 0.744 24 H 0.384 0.616 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -29.185 0.113 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.295 3.705 15 O -0.422 6.422 16 C -0.175 4.175 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.160 4.160 20 C -0.347 4.347 21 S 0.350 5.650 22 C -0.345 4.345 23 H 0.065 0.935 24 H 0.217 0.783 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.448 -30.238 -0.741 30.573 hybrid contribution 0.393 2.035 0.832 2.234 sum -4.055 -28.203 0.091 28.493 Atomic orbital electron populations 1.69649 1.05129 1.25809 1.57772 1.24759 0.95574 0.97777 1.02986 0.86231 0.78494 0.83357 0.77892 1.21224 1.21665 1.21228 1.19205 0.91087 0.84135 1.42762 0.91134 1.42332 1.05856 0.99984 1.89629 1.20523 0.93287 0.85208 0.98200 1.21943 0.99562 0.93370 1.02692 1.21356 0.91788 0.84666 1.02408 1.46124 1.10751 1.05900 1.75234 1.20670 0.89761 0.84052 0.75974 1.90708 1.17024 1.84858 1.49590 1.21649 0.98340 0.92741 1.04757 1.20049 0.95000 0.88859 1.04614 1.18995 1.00614 0.99577 0.92005 1.20161 0.98972 0.97275 0.99592 1.25615 1.05856 1.04259 0.98985 1.84322 1.44618 1.35107 1.00990 1.25529 1.04309 1.02092 1.02587 0.93451 0.78304 0.96057 0.96074 0.91317 0.91315 0.91393 0.91414 0.76496 0.88793 0.88723 0.89968 0.90114 0.84094 0.81891 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.72 5.60 -59.91 -0.34 -19.06 16 10 C 0.16 3.12 6.26 -4.05 -0.03 3.09 16 11 C -0.14 -2.08 5.44 -26.73 -0.15 -2.23 16 12 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 13 N -0.73 -8.07 5.56 -60.29 -0.33 -8.40 16 14 C 0.51 5.96 7.83 -10.98 -0.09 5.87 16 15 O -0.54 -8.56 15.98 5.56 0.09 -8.47 16 16 C -0.13 -1.07 5.68 -27.88 -0.16 -1.23 16 17 C -0.04 -0.38 4.76 -27.88 -0.13 -0.51 16 18 C -0.10 -0.79 5.06 -106.25 -0.54 -1.32 16 19 C -0.13 -0.95 9.98 -41.21 -0.41 -1.36 16 20 C -0.21 -1.43 11.23 29.04 0.33 -1.10 16 21 S 0.09 0.59 23.34 -107.50 -2.51 -1.92 16 22 C -0.21 -1.57 10.98 29.04 0.32 -1.25 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.38 10.15 7.67 -40.82 -0.31 9.84 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -33.34 340.54 -9.07 -42.41 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.69 Total: 6.37 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.12 Total: -5.94 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.05 Total: -55.09 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.51 Total: -1.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.34 -9.07 -42.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159944468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.334 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds