Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75878 * 125.20480 * 2 1 4 4 C 1.75884 * 90.97033 * 180.02562 * 3 2 1 5 5 C 1.33386 * 109.59706 * 0.02562 * 4 3 2 6 6 C 1.33394 * 125.20048 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.53859 * 359.70222 * 6 2 1 8 8 C 1.50697 * 109.46946 * 85.00349 * 7 6 2 9 9 O 1.21275 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47153 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46968 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.46812 * 180.02562 * 13 12 11 15 15 C 1.36942 * 119.99710 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99828 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47257 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47316 * 120.00211 * 19 17 15 22 22 H 1.48506 * 109.47363 * 240.00276 * 19 17 15 23 23 H 1.09006 * 109.46630 * 269.97038 * 1 2 3 24 24 H 1.09002 * 109.46774 * 29.96908 * 1 2 3 25 25 H 1.08994 * 109.47373 * 149.97223 * 1 2 3 26 26 H 1.08002 * 125.20650 * 180.02562 * 4 3 2 27 27 H 1.07999 * 122.54538 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.47229 * 205.00733 * 7 6 2 29 29 H 1.08999 * 109.47288 * 325.00551 * 7 6 2 30 30 H 0.97000 * 120.00344 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47561 * 299.99955 * 11 10 8 32 32 H 1.09004 * 109.47363 * 60.00066 * 11 10 8 33 33 H 1.08999 * 109.46932 * 299.99888 * 12 11 10 34 34 H 1.08999 * 109.47031 * 60.00261 * 12 11 10 35 35 H 1.08999 * 109.47220 * 299.99734 * 13 12 11 36 36 H 1.08999 * 109.47013 * 60.00273 * 13 12 11 37 37 H 0.97002 * 120.00199 * 359.97438 * 14 13 12 38 38 H 0.96999 * 119.99950 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6380 -0.8430 -0.0016 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 0.0055 8 6 1.3943 -2.9063 -1.4075 9 8 1.6142 -2.1487 -2.3287 10 7 0.8719 -4.1252 -1.6476 11 6 0.5703 -4.5353 -3.0213 12 6 -0.0082 -5.9518 -3.0154 13 6 -0.3238 -6.3797 -4.4500 14 7 -0.8783 -7.7357 -4.4442 15 6 -1.2378 -8.3335 -5.6227 16 1 -1.1129 -7.8051 -6.5562 17 6 -1.7627 -9.6185 -5.6173 18 7 -1.9154 -10.2623 -4.4795 19 14 -2.2537 -10.4336 -7.2247 20 1 -1.9843 -9.5060 -8.3527 21 1 -1.4656 -11.6786 -7.4094 22 1 -3.7010 -10.7645 -7.1902 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 4.9863 0.8269 -0.0007 27 1 4.3720 -1.6352 -0.0017 28 1 2.4312 -3.1727 0.4386 29 1 0.7909 -2.5005 0.5988 30 1 0.6957 -4.7311 -0.9108 31 1 -0.1560 -3.8476 -3.4547 32 1 1.4847 -4.5192 -3.6144 33 1 0.7184 -6.6392 -2.5823 34 1 -0.9226 -5.9683 -2.4222 35 1 -1.0506 -5.6923 -4.8827 36 1 0.5903 -6.3631 -5.0435 37 1 -0.9902 -8.2105 -3.6057 38 1 -2.2819 -11.1604 -4.4758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167698539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -7.861339 kcal Electronic energy + Delta-G solvation = -18710.271549 eV Core-core repulsion = 15679.183222 eV Total energy + Delta-G solvation = -3031.088326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06656 -38.13525 -35.96914 -34.31867 -32.51482 -32.01940 -30.58999 -29.21618 -26.13588 -24.93148 -23.05384 -22.42808 -21.22070 -20.42752 -18.59852 -17.39157 -17.29562 -16.78598 -16.15216 -15.73870 -15.21426 -14.60496 -14.51866 -14.22540 -13.63287 -13.50362 -13.30401 -13.03357 -12.96829 -12.81080 -12.42960 -12.25896 -11.94081 -11.72040 -11.63976 -10.96954 -10.94041 -10.93128 -10.77864 -10.62986 -10.07609 -9.89192 -9.70892 -9.04032 -8.89455 -8.73471 -8.55936 -6.94528 -5.78463 -3.07333 0.80932 1.43378 1.78547 2.42135 2.61597 3.29826 3.42929 3.48831 3.51038 4.51880 4.58290 4.61939 4.78543 4.90235 5.08920 5.13360 5.16825 5.27312 5.30541 5.31347 5.39777 5.56596 5.62585 5.70527 5.85737 5.99049 6.06014 6.15889 6.18685 6.30517 6.31355 6.46771 6.78083 6.82289 7.48282 7.69846 8.21143 8.40616 9.51793 10.08820 10.43491 11.44646 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.052973 B = 0.002240 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.444952 B =12496.779003 C =12514.407946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.159 4.159 3 S 0.089 5.911 4 C -0.218 4.218 5 C -0.116 4.116 6 C -0.092 4.092 7 C -0.082 4.082 8 C 0.510 3.490 9 O -0.532 6.532 10 N -0.730 5.730 11 C 0.123 3.877 12 C -0.137 4.137 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.072 0.928 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 21.433 15.036 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.277 4.277 3 S 0.354 5.646 4 C -0.353 4.353 5 C -0.147 4.147 6 C -0.104 4.104 7 C -0.125 4.125 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.382 5.382 11 C -0.001 4.001 12 C -0.175 4.175 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.180 0.820 27 H 0.156 0.844 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.934 23.552 14.161 28.897 hybrid contribution 0.009 -2.544 -0.288 2.560 sum 8.943 21.008 13.873 26.717 Atomic orbital electron populations 1.20347 0.87904 1.03530 1.02431 1.24236 0.99849 0.95217 1.08381 1.84152 0.97154 1.09642 1.73684 1.25427 1.01664 0.96639 1.11568 1.19977 0.95453 0.96579 1.02644 1.18186 0.92875 0.94150 1.05203 1.20368 1.03013 0.94029 0.95072 1.20513 0.77317 0.81521 0.91102 1.90727 1.51869 1.52247 1.45945 1.46101 1.65168 1.16769 1.10150 1.21345 1.00601 0.96004 0.82137 1.21943 1.01159 0.94285 1.00158 1.20523 0.96251 0.88144 0.92289 1.42352 1.75991 1.12292 1.07201 1.19295 1.34110 0.96959 0.86641 0.91038 1.24760 1.02132 0.97261 0.97001 1.69670 1.51481 1.13111 1.24074 0.86091 0.77863 0.79278 0.82826 1.20503 1.21838 1.21830 0.90654 0.91149 0.90585 0.81971 0.84409 0.87914 0.88001 0.76548 0.91456 0.91465 0.91302 0.91305 0.96068 0.96072 0.78305 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.78 36.01 0.35 -0.35 16 2 C -0.16 -1.62 6.50 -36.00 -0.23 -1.86 16 3 S 0.09 0.84 23.33 -107.50 -2.51 -1.67 16 4 C -0.22 -1.99 11.23 29.04 0.33 -1.66 16 5 C -0.12 -1.14 9.96 -41.21 -0.41 -1.55 16 6 C -0.09 -0.95 4.29 -106.25 -0.46 -1.40 16 7 C -0.08 -0.70 5.34 -29.04 -0.16 -0.86 16 8 C 0.51 6.15 7.55 -10.99 -0.08 6.06 16 9 O -0.53 -8.75 16.03 5.56 0.09 -8.66 16 10 N -0.73 -8.02 5.56 -60.29 -0.33 -8.35 16 11 C 0.12 1.66 5.67 -4.04 -0.02 1.63 16 12 C -0.14 -2.07 5.44 -26.73 -0.15 -2.21 16 13 C 0.16 3.11 6.26 -4.04 -0.03 3.09 16 14 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 15 C -0.24 -6.76 9.99 -15.06 -0.15 -6.92 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 26 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 29 H 0.10 0.65 7.52 -51.93 -0.39 0.26 16 30 H 0.40 3.29 8.47 -40.82 -0.35 2.94 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -34.19 338.33 -9.01 -43.19 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.62 Total: 6.08 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.10 Total: -6.57 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.05 Total: -54.96 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.19 -9.01 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167698539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.333 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds