Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35450 * 116.99920 * 2 1 4 4 N 1.32318 * 119.15744 * 0.02562 * 3 2 1 5 5 C 1.32515 * 120.94911 * 179.97438 * 4 3 2 6 6 C 1.38118 * 119.27165 * 359.71492 * 5 4 3 7 7 N 1.48017 * 120.77407 * 180.27649 * 6 5 4 8 8 O 1.21799 * 120.00398 * 5.79253 * 7 6 5 9 9 O 1.21799 * 119.99494 * 185.78767 * 7 6 5 10 10 C 1.39632 * 118.44746 * 0.54552 * 6 5 4 11 11 N 1.38528 * 120.49162 * 179.72916 * 10 6 5 12 12 C 1.46505 * 120.00010 * 174.62118 * 11 10 6 13 13 C 1.52998 * 109.47326 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.46989 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47107 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99585 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99640 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47093 * 90.00331 * 19 17 15 21 21 H 1.48500 * 109.46851 * 209.99965 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00147 * 19 17 15 23 23 N 1.32268 * 119.15558 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47304 * 300.00196 * 1 2 3 26 26 H 1.09004 * 109.46823 * 59.99989 * 1 2 3 27 27 H 1.08001 * 120.36214 * 180.02562 * 5 4 3 28 28 H 0.96999 * 120.00233 * 354.61936 * 11 10 6 29 29 H 1.09002 * 109.47005 * 59.99609 * 12 11 10 30 30 H 1.09000 * 109.46850 * 300.00329 * 12 11 10 31 31 H 1.09006 * 109.46619 * 299.99898 * 13 12 11 32 32 H 1.08999 * 109.47030 * 59.99781 * 13 12 11 33 33 H 1.08997 * 109.47404 * 299.99702 * 14 13 12 34 34 H 1.08999 * 109.47272 * 60.00102 * 14 13 12 35 35 H 0.97002 * 119.99666 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3070 2.3059 0.0005 5 6 1.8714 3.5048 0.0010 6 6 3.2491 3.6027 0.0070 7 7 3.9144 4.9249 0.0140 8 8 3.2503 5.9403 0.1209 9 8 5.1260 4.9975 -0.0872 10 6 3.9996 2.4253 0.0007 11 7 5.3840 2.4741 0.0007 12 6 6.1607 1.2370 0.1129 13 6 7.6541 1.5683 0.0888 14 6 8.4651 0.2764 0.2067 15 6 9.9363 0.6027 0.1824 16 1 10.2603 1.6291 0.0923 17 6 10.8684 -0.4090 0.2751 18 7 10.4738 -1.6587 0.3843 19 14 12.6919 -0.0043 0.2456 20 1 13.1702 0.2262 1.6324 21 1 13.4407 -1.1377 -0.3543 22 1 12.9142 1.2201 -0.5647 23 7 3.3657 1.2566 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.2608 4.3956 0.0019 28 1 5.8392 3.3274 -0.0737 29 1 5.9203 0.5800 -0.7230 30 1 5.9147 0.7374 1.0500 31 1 7.9003 2.0682 -0.8481 32 1 7.8941 2.2251 0.9250 33 1 8.2189 -0.2230 1.1437 34 1 8.2253 -0.3808 -0.6292 35 1 11.1297 -2.3704 0.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = -9.092221 kcal Electronic energy + Delta-G solvation = -21401.736663 eV Core-core repulsion = 17824.301747 eV Total energy + Delta-G solvation = -3577.434916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.56488 -42.40161 -39.93031 -38.44004 -37.53691 -35.88642 -34.68988 -33.82089 -32.21481 -29.03884 -28.51929 -27.40079 -25.80430 -24.49710 -24.05241 -22.28087 -20.65104 -20.34880 -20.15995 -18.99669 -18.78451 -18.41951 -17.74719 -17.68686 -16.64286 -16.55926 -16.43308 -15.55390 -15.36072 -15.20366 -14.34893 -14.07537 -13.82973 -13.78279 -13.02122 -12.97716 -12.83028 -12.66901 -12.61611 -12.58212 -12.41910 -12.39691 -12.10227 -11.68931 -11.54994 -11.24186 -10.97395 -10.75167 -10.56514 -9.86844 -8.21252 -6.32196 -1.32035 -0.24269 0.07217 0.17558 1.05279 1.41241 1.42000 1.53244 1.76122 2.18250 2.41007 2.57715 2.83697 3.08405 3.12759 3.65559 3.98261 4.10221 4.25569 4.38369 4.38954 4.46059 4.72906 4.82876 4.84714 4.99221 5.07968 5.11513 5.39394 5.49895 5.66328 5.70493 5.81524 6.07674 6.21139 6.46238 6.67272 6.84040 7.37269 8.90592 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.003599 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.274560 B = 7778.596621 C = 9210.090609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.291 6.291 3 C 0.573 3.427 4 N -0.585 5.585 5 C 0.315 3.685 6 C -0.269 4.269 7 N 0.068 4.932 8 O -0.128 6.128 9 O -0.237 6.237 10 C 0.516 3.484 11 N -0.663 5.663 12 C 0.128 3.872 13 C -0.108 4.108 14 C 0.029 3.971 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 N -0.598 5.598 24 H 0.134 0.866 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.238 0.762 28 H 0.432 0.568 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H -0.002 1.002 34 H -0.002 1.002 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.301 8.965 -0.935 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.190 6.190 3 C 0.271 3.729 4 N -0.320 5.320 5 C 0.146 3.854 6 C -0.368 4.368 7 N 0.576 4.424 8 O -0.353 6.353 9 O -0.426 6.426 10 C 0.264 3.736 11 N -0.301 5.301 12 C 0.005 3.995 13 C -0.146 4.146 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.187 1.187 23 N -0.339 5.339 24 H 0.152 0.848 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.254 0.746 28 H 0.282 0.718 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.570 6.764 -0.933 24.539 hybrid contribution 1.712 1.040 0.006 2.003 sum -21.858 7.804 -0.927 23.228 Atomic orbital electron populations 1.23539 0.72170 1.06267 1.04161 1.86188 1.26609 1.21602 1.84579 1.20843 0.84753 0.86056 0.81201 1.68657 1.38181 0.97354 1.27813 1.23373 0.87950 0.96995 0.77042 1.22129 0.96488 0.82262 1.35935 1.43000 1.00507 1.02246 0.96626 1.94487 1.64637 1.24824 1.51401 1.94303 0.97112 1.92496 1.58694 1.17935 0.86647 0.86110 0.82957 1.46200 1.01017 1.13703 1.69205 1.21599 0.90768 0.84808 1.02345 1.21659 0.91339 0.99554 1.02060 1.18896 0.93999 0.92522 0.95497 1.21667 0.92609 0.93675 1.50276 0.91924 1.25957 1.04249 0.94832 0.94699 1.70092 1.35790 1.00194 1.51122 0.85452 0.78986 0.78052 0.78594 1.19824 1.20818 1.18717 1.67346 1.09628 1.25551 1.31350 0.84757 0.90467 0.90451 0.74571 0.71771 0.91067 0.91293 0.91678 0.91733 0.98409 0.98361 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.36 113.37 1.17 1.52 16 2 O -0.29 -6.19 10.55 -87.48 -0.92 -7.11 16 3 C 0.57 13.73 8.49 180.58 1.53 15.26 16 4 N -0.58 -10.87 9.22 -313.75 -2.89 -13.76 16 5 C 0.31 5.20 10.81 84.56 0.91 6.11 16 6 C -0.27 -6.26 6.90 36.68 0.25 -6.01 16 7 N 0.07 1.72 4.45 -45.73 -0.20 1.52 16 8 O -0.13 -2.96 18.55 18.89 0.35 -2.61 16 9 O -0.24 -6.92 15.88 18.89 0.30 -6.62 16 10 C 0.52 14.56 7.49 133.18 1.00 15.55 16 11 N -0.66 -20.12 5.59 -344.62 -1.93 -22.05 16 12 C 0.13 4.39 5.73 86.38 0.50 4.89 16 13 C -0.11 -4.27 5.27 30.59 0.16 -4.11 16 14 C 0.03 1.47 4.97 29.85 0.15 1.62 16 15 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.00 0.03 5.46 84.65 0.46 0.50 16 18 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 N -0.60 -17.48 9.73 -311.09 -3.03 -20.51 16 24 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 26 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 27 H 0.24 1.83 7.70 -2.91 -0.02 1.81 16 28 H 0.43 12.82 5.08 -92.74 -0.47 12.35 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -67.91 314.73 1.02 -66.89 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.66 Total: 9.27 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.37 Total: 4.97 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -7.77 Total: -110.89 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.27 Total: -16.34 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.91 1.02 -66.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.796 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds