Wall clock time and date at job start Tue Mar 31 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38348 * 120.05205 * 2 1 4 4 F 1.35099 * 119.98526 * 359.97438 * 3 2 1 5 5 C 1.38494 * 120.02539 * 179.97438 * 3 2 1 6 6 C 1.38275 * 120.12216 * 359.97438 * 5 3 2 7 7 N 1.48005 * 119.94870 * 179.97438 * 6 5 3 8 8 O 1.21807 * 120.00142 * 0.02562 * 7 6 5 9 9 O 1.21802 * 120.00328 * 179.97438 * 7 6 5 10 10 C 1.38088 * 120.10234 * 0.02562 * 6 5 3 11 11 C 1.38856 * 120.04942 * 179.97438 * 2 1 3 12 12 N 1.39663 * 120.05855 * 0.04338 * 11 2 1 13 13 C 1.46505 * 119.99961 * 179.97438 * 12 11 2 14 14 C 1.52998 * 109.47202 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46944 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46873 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00280 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99781 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99924 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47174 * 90.00542 * 20 18 16 22 22 H 1.48501 * 109.46730 * 210.00134 * 20 18 16 23 23 H 1.48501 * 109.47280 * 330.00072 * 20 18 16 24 24 H 1.08999 * 109.46919 * 270.00175 * 1 2 3 25 25 H 1.09000 * 109.46858 * 30.00240 * 1 2 3 26 26 H 1.09001 * 109.46899 * 150.00404 * 1 2 3 27 27 H 1.07999 * 119.93781 * 180.27475 * 5 3 2 28 28 H 1.08000 * 120.01304 * 180.02562 * 10 6 5 29 29 H 0.97003 * 120.00327 * 359.97438 * 12 11 2 30 30 H 1.08998 * 109.47502 * 300.00731 * 13 12 11 31 31 H 1.09009 * 109.46679 * 60.00369 * 13 12 11 32 32 H 1.08995 * 109.47631 * 300.00221 * 14 13 12 33 33 H 1.08993 * 109.47062 * 60.00838 * 14 13 12 34 34 H 1.09003 * 109.46690 * 300.00070 * 15 14 13 35 35 H 1.09001 * 109.47248 * 59.99862 * 15 14 13 36 36 H 0.97001 * 119.99602 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1975 0.0000 4 9 1.5251 2.3679 -0.0005 5 6 3.5848 1.1969 0.0005 6 6 4.2782 0.0005 0.0016 7 7 5.7582 0.0043 0.0016 8 8 6.3646 1.0607 0.0011 9 8 6.3700 -1.0489 0.0030 10 6 3.5918 -1.1977 0.0016 11 6 2.2023 -1.2019 0.0005 12 7 1.5063 -2.4128 0.0002 13 6 2.2412 -3.6801 0.0002 14 6 1.2492 -4.8449 -0.0009 15 6 2.0168 -6.1685 -0.0003 16 6 1.0397 -7.3158 -0.0020 17 1 -0.0224 -7.1205 -0.0030 18 6 1.5018 -8.6148 -0.0023 19 7 2.7953 -8.8526 -0.0006 20 14 0.2906 -10.0370 -0.0037 21 1 -0.0293 -10.4133 -1.4041 22 1 0.8924 -11.2003 0.6962 23 1 -0.9539 -9.6281 0.6957 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.1242 2.1325 0.0050 28 1 4.1349 -2.1313 0.0029 29 1 0.5363 -2.4146 -0.0001 30 1 2.8683 -3.7366 -0.8896 31 1 2.8677 -3.7368 0.8904 32 1 0.6218 -4.7888 0.8886 33 1 0.6232 -4.7881 -0.8913 34 1 2.6445 -6.2249 -0.8897 35 1 2.6427 -6.2251 0.8903 36 1 3.1204 -9.7666 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:42 Heat of formation + Delta-G solvation = -39.999230 kcal Electronic energy + Delta-G solvation = -21106.718479 eV Core-core repulsion = 17508.023373 eV Total energy + Delta-G solvation = -3598.695106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.41056 -42.26091 -40.04655 -36.67951 -36.43979 -34.14095 -33.21302 -31.63920 -29.60808 -28.79655 -26.70486 -25.28627 -23.78727 -22.08207 -21.97815 -20.65779 -19.51295 -18.82529 -17.62469 -17.41766 -16.73739 -16.29716 -16.20113 -16.09300 -15.69180 -15.14039 -14.84477 -14.48762 -13.92637 -13.55096 -13.09691 -12.88834 -12.47907 -12.26468 -12.14094 -12.12597 -11.90987 -11.61701 -11.29666 -11.20162 -11.05034 -10.89944 -10.66812 -10.59343 -9.95367 -9.62876 -9.38041 -9.26084 -8.47312 -7.91309 -6.11792 -4.15627 -0.36073 0.70769 1.21045 1.21704 2.95226 3.02812 3.24266 3.31372 3.33505 3.69908 4.21279 4.27703 4.35749 4.46227 4.57882 4.88534 5.05230 5.16222 5.24301 5.31151 5.38160 5.40038 5.44128 5.57412 5.66942 5.83910 5.99178 6.25264 6.33964 6.38956 6.77479 6.89236 7.36041 7.49251 7.55013 7.59874 7.85272 8.25714 8.90538 9.49459 10.99337 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.003330 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.471523 B = 8407.164459 C = 9728.585710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.159 4.159 3 C 0.151 3.849 4 F -0.123 7.123 5 C -0.163 4.163 6 C 0.030 3.970 7 N 0.027 4.973 8 O -0.159 6.159 9 O -0.148 6.148 10 C -0.145 4.145 11 C 0.255 3.745 12 N -0.722 5.722 13 C 0.109 3.891 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.407 0.593 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 19.899 0.034 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.166 4.166 3 C 0.130 3.870 4 F -0.101 7.101 5 C -0.185 4.185 6 C -0.053 4.053 7 N 0.548 4.452 8 O -0.375 6.375 9 O -0.366 6.366 10 C -0.170 4.170 11 C 0.145 3.855 12 N -0.348 5.348 13 C -0.014 4.014 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.245 0.755 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.341 19.560 0.038 19.843 hybrid contribution -0.598 -0.652 -0.018 0.885 sum -3.940 18.908 0.020 19.314 Atomic orbital electron populations 1.20669 0.88999 1.03852 1.03372 1.19660 0.97774 0.90476 1.08673 1.16599 0.88295 0.80931 1.01190 1.91535 1.79809 1.45204 1.93580 1.20440 0.92703 0.98497 1.06894 1.20274 0.79294 0.95436 1.10328 1.43527 1.03420 1.00532 0.97698 1.94529 1.69134 1.20523 1.53300 1.94589 1.68554 1.20745 1.52682 1.20493 0.92812 0.98171 1.05491 1.17035 0.89754 0.86491 0.92263 1.45288 1.09045 1.02503 1.77927 1.21920 0.96198 0.81582 1.01671 1.21872 0.97784 0.94973 1.01163 1.19034 0.95494 0.89055 0.97739 1.21158 0.92938 0.90903 1.51454 0.92662 1.25022 0.95158 0.99060 0.95093 1.69952 1.12457 1.20476 1.50180 0.86576 0.81191 0.81968 0.78166 1.20601 1.21113 1.19887 0.90109 0.90340 0.90736 0.82381 0.82115 0.75547 0.91558 0.91529 0.92514 0.92529 0.96191 0.96175 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.40 36.01 0.34 -0.49 16 2 C -0.16 -1.56 5.90 -104.35 -0.62 -2.17 16 3 C 0.15 1.52 7.24 -39.45 -0.29 1.24 16 4 F -0.12 -1.20 16.48 2.25 0.04 -1.16 16 5 C -0.16 -1.74 9.53 -39.47 -0.38 -2.12 16 6 C 0.03 0.37 6.85 -80.00 -0.55 -0.18 16 7 N 0.03 0.39 4.45 33.94 0.15 0.54 16 8 O -0.16 -2.27 18.44 -29.46 -0.54 -2.82 16 9 O -0.15 -2.26 18.44 -29.46 -0.54 -2.80 16 10 C -0.15 -1.76 8.82 -39.37 -0.35 -2.11 16 11 C 0.25 2.83 6.63 -83.80 -0.56 2.27 16 12 N -0.72 -8.12 5.63 -58.64 -0.33 -8.45 16 13 C 0.11 1.52 4.91 -4.04 -0.02 1.50 16 14 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 16 C -0.53 -14.02 9.11 -34.44 -0.31 -14.34 16 17 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 20 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.53 7.64 -51.93 -0.40 0.13 16 26 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16 27 H 0.16 1.49 7.60 -52.49 -0.40 1.09 16 28 H 0.16 2.00 6.28 -52.49 -0.33 1.67 16 29 H 0.41 3.92 6.47 -40.82 -0.26 3.66 16 30 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 31 H 0.07 0.94 7.95 -51.92 -0.41 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -28.97 318.87 -8.02 -36.99 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.21 Total: -1.14 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -3.10 Total: -16.66 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.56 Total: -33.01 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -1.09 Total: -5.62 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.97 -8.02 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.007 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds