Wall clock time and date at job start Tue Mar 31 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99613 * 2 1 4 4 H 1.48504 * 109.47023 * 270.00363 * 3 2 1 5 5 H 1.48500 * 109.47453 * 30.00172 * 3 2 1 6 6 H 1.48496 * 109.47279 * 150.00699 * 3 2 1 7 7 C 1.39922 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99772 * 197.29305 * 7 2 1 9 9 C 1.41407 * 120.00383 * 17.29355 * 7 2 1 10 10 C 1.40787 * 120.21032 * 203.41222 * 9 7 2 11 11 C 1.37653 * 119.89482 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32497 * 359.72351 * 11 10 9 13 13 C 1.39303 * 120.42720 * 0.55185 * 12 11 10 14 14 N 1.39735 * 119.95537 * 179.72496 * 13 12 11 15 15 C 1.38932 * 120.00057 * 1.27546 * 14 13 12 16 16 C 1.38965 * 120.17490 * 261.58962 * 15 14 13 17 17 C 1.37955 * 120.06598 * 180.02562 * 16 15 14 18 18 C 1.38618 * 120.42032 * 359.94792 * 17 16 15 19 19 C 1.37762 * 120.35293 * 0.02562 * 18 17 16 20 20 C 1.39724 * 119.92766 * 0.02562 * 19 18 17 21 21 C 1.47439 * 120.20473 * 179.97438 * 20 19 18 22 22 N 1.34768 * 120.00164 * 3.10785 * 21 20 19 23 23 O 1.21609 * 119.99770 * 183.10129 * 21 20 19 24 24 C 1.38332 * 120.08911 * 359.44888 * 13 12 11 25 25 H 0.96993 * 120.00692 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.05249 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.83395 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.78567 * 180.28266 * 12 11 10 29 29 H 0.96996 * 120.00156 * 181.27407 * 14 13 12 30 30 H 1.07998 * 119.96724 * 0.02562 * 16 15 14 31 31 H 1.07990 * 119.79171 * 179.97438 * 17 16 15 32 32 H 1.07997 * 119.82154 * 180.02562 * 18 17 16 33 33 H 1.08007 * 120.03159 * 179.74458 * 19 18 17 34 34 H 0.96999 * 120.00141 * 359.97438 * 22 21 20 35 35 H 0.97004 * 119.99961 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.15993 * 180.25034 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.6999 7 6 2.0079 -1.2117 -0.0005 8 1 3.0514 -1.2329 0.2775 9 6 1.3490 -2.4086 -0.3651 10 6 1.8395 -3.6511 0.0795 11 6 1.1933 -4.8122 -0.2797 12 6 0.0584 -4.7644 -1.0724 13 6 -0.4354 -3.5428 -1.5246 14 7 -1.5777 -3.5065 -2.3286 15 6 -2.2356 -4.6860 -2.6546 16 6 -2.0055 -5.2982 -3.8807 17 6 -2.6603 -6.4690 -4.2023 18 6 -3.5498 -7.0441 -3.3081 19 6 -3.7905 -6.4522 -2.0876 20 6 -3.1361 -5.2656 -1.7472 21 6 -3.3895 -4.6266 -0.4429 22 7 -4.2062 -5.2191 0.4504 23 8 -2.8614 -3.5649 -0.1732 24 6 0.2003 -2.3652 -1.1741 25 1 -0.4851 0.8399 0.0004 26 1 2.7219 -3.6932 0.7007 27 1 1.5707 -5.7648 0.0616 28 1 -0.4445 -5.6805 -1.3453 29 1 -1.9114 -2.6578 -2.6590 30 1 -1.3133 -4.8569 -4.5825 31 1 -2.4785 -6.9408 -5.1565 32 1 -4.0568 -7.9611 -3.5697 33 1 -4.4877 -6.9026 -1.3965 34 1 -4.6276 -6.0659 0.2352 35 1 -4.3726 -4.7989 1.3087 36 1 -0.1839 -1.4173 -1.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173984039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:08 Heat of formation + Delta-G solvation = 22.781801 kcal Electronic energy + Delta-G solvation = -21409.848885 eV Core-core repulsion = 18244.645394 eV Total energy + Delta-G solvation = -3165.203491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08347 -37.94306 -37.35097 -34.84582 -33.41370 -33.08956 -30.77388 -29.90060 -29.30913 -27.01672 -25.05508 -23.78119 -22.20516 -20.88297 -20.48704 -19.75788 -17.96971 -17.16045 -16.53739 -16.30055 -15.67373 -15.06619 -14.68488 -14.57493 -14.41601 -14.13919 -13.99598 -13.19782 -12.80667 -12.71824 -12.26349 -12.05381 -11.88961 -11.66113 -11.37278 -11.08698 -10.96100 -10.52717 -10.35156 -9.68992 -9.54918 -9.37088 -9.33617 -9.12962 -8.90786 -8.79032 -8.48446 -7.18145 -6.58890 -6.12176 -4.18796 1.00558 1.40612 2.96291 3.16668 3.20440 3.20525 3.36381 3.45487 3.77196 4.04034 4.06730 4.29073 4.82026 4.84734 4.98351 5.03672 5.44128 5.49076 5.71554 5.90603 5.98685 6.23352 6.37776 6.45273 6.59202 6.69560 6.79608 7.02119 7.07628 7.24274 7.26976 7.52609 7.54382 7.62102 7.96333 8.08193 8.20789 8.30123 8.60534 8.68434 8.77310 8.96445 9.13326 9.23017 10.38489 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023378 B = 0.004929 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.416196 B = 5679.335798 C = 5903.055809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.137 3.863 10 C -0.257 4.257 11 C -0.069 4.069 12 C -0.291 4.291 13 C 0.235 3.765 14 N -0.707 5.707 15 C 0.240 3.760 16 C -0.136 4.136 17 C -0.090 4.090 18 C -0.142 4.142 19 C -0.086 4.086 20 C -0.148 4.148 21 C 0.548 3.452 22 N -0.863 5.863 23 O -0.485 6.485 24 C -0.217 4.217 25 H 0.276 0.724 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.402 0.598 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.392 0.608 35 H 0.401 0.599 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -10.787 -5.768 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.134 3.866 10 C -0.277 4.277 11 C -0.088 4.088 12 C -0.314 4.314 13 C 0.139 3.861 14 N -0.338 5.338 15 C 0.144 3.856 16 C -0.157 4.157 17 C -0.109 4.109 18 C -0.160 4.160 19 C -0.105 4.105 20 C -0.153 4.153 21 C 0.333 3.667 22 N -0.429 5.429 23 O -0.357 6.357 24 C -0.240 4.240 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.239 0.761 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.221 0.779 35 H 0.232 0.768 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.793 -10.034 -5.723 15.143 hybrid contribution -0.213 0.623 0.301 0.724 sum -10.005 -9.411 -5.422 14.767 Atomic orbital electron populations 1.69906 1.07332 1.28586 1.35306 1.25884 0.94659 1.00982 0.92586 0.86406 0.80528 0.81136 0.79114 1.19464 1.20522 1.18760 1.19534 0.97782 0.91250 1.40975 0.90690 1.17305 0.90241 0.91806 0.87262 1.20825 1.04402 0.92889 1.09579 1.20219 0.95141 0.96149 0.97241 1.19801 1.03569 0.94170 1.13847 1.17402 0.84406 0.94311 0.89958 1.41539 1.29404 1.04723 1.58141 1.17453 0.89188 0.88033 0.90944 1.21662 1.00439 0.95996 0.97556 1.21178 0.95463 0.95027 0.99241 1.20980 1.00128 1.00619 0.94280 1.21163 0.98435 0.94122 0.96804 1.20570 1.00807 0.97659 0.96286 1.18154 0.79010 0.85323 0.84234 1.43774 1.51732 1.27104 1.20274 1.91041 1.46498 1.20756 1.77412 1.20718 1.01743 0.94934 1.06626 0.91269 0.89512 0.89890 0.90293 0.76115 0.85186 0.85758 0.85809 0.86002 0.77924 0.76845 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.75 10.85 55.55 0.60 -21.15 16 2 C 0.08 2.04 5.16 -17.35 -0.09 1.95 16 3 Si 0.90 19.69 29.59 -169.99 -5.03 14.66 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -13.14 9.06 -37.75 -0.34 -13.48 16 8 H 0.07 2.04 7.90 -52.48 -0.41 1.62 16 9 C 0.14 3.92 5.59 -106.85 -0.60 3.33 16 10 C -0.26 -6.86 9.79 -38.83 -0.38 -7.24 16 11 C -0.07 -1.70 10.02 -39.69 -0.40 -2.10 16 12 C -0.29 -7.14 9.28 -39.08 -0.36 -7.50 16 13 C 0.24 5.84 5.19 -83.82 -0.43 5.41 16 14 N -0.71 -14.75 3.92 -8.29 -0.03 -14.78 16 15 C 0.24 4.21 4.42 -83.58 -0.37 3.84 16 16 C -0.14 -1.97 9.96 -39.42 -0.39 -2.37 16 17 C -0.09 -1.02 10.03 -39.54 -0.40 -1.42 16 18 C -0.14 -1.49 10.02 -39.62 -0.40 -1.88 16 19 C -0.09 -1.01 9.53 -39.20 -0.37 -1.38 16 20 C -0.15 -2.37 5.61 -104.80 -0.59 -2.96 16 21 C 0.55 9.79 8.01 -12.52 -0.10 9.69 16 22 N -0.86 -10.76 8.82 30.43 0.27 -10.49 16 23 O -0.49 -11.37 14.78 5.27 0.08 -11.29 16 24 C -0.22 -6.01 8.54 -38.67 -0.33 -6.34 16 25 H 0.28 7.00 8.30 -40.82 -0.34 6.67 16 26 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.08 1.82 6.79 -52.48 -0.36 1.46 16 29 H 0.40 8.13 8.83 -40.82 -0.36 7.77 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.01 6.42 -52.48 -0.34 0.67 16 34 H 0.39 3.39 6.87 -40.82 -0.28 3.11 16 35 H 0.40 4.68 8.93 -40.82 -0.36 4.31 16 36 H 0.12 3.41 6.06 -52.49 -0.32 3.09 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -34.03 309.87 -8.67 -42.71 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -3.68 Total: 18.14 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -5.55 Total: -22.46 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.84 Total: -46.42 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.03 -8.67 -42.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173984039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.491 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds