Wall clock time and date at job start Tue Mar 31 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86805 * 120.00438 * 2 1 4 4 H 1.48495 * 109.46608 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46905 * 120.00243 * 3 2 1 6 6 H 1.48493 * 109.47091 * 240.00495 * 3 2 1 7 7 C 1.39938 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99640 * 213.94298 * 7 2 1 9 9 C 1.41014 * 119.99842 * 33.93864 * 7 2 1 10 10 C 1.40739 * 120.30811 * 23.24954 * 9 7 2 11 11 C 1.36433 * 119.95232 * 179.97438 * 10 9 7 12 12 C 1.38925 * 120.59844 * 359.97438 * 11 10 9 13 13 C 1.38129 * 120.63637 * 0.02562 * 12 11 10 14 14 C 1.38793 * 120.02084 * 359.68118 * 13 12 11 15 15 N 1.38723 * 120.29756 * 180.29692 * 14 13 12 16 16 C 1.39033 * 120.00093 * 250.44174 * 15 14 13 17 17 C 1.39256 * 119.93269 * 3.57753 * 16 15 14 18 18 C 1.37607 * 120.06257 * 179.72336 * 17 16 15 19 19 C 1.39803 * 119.93417 * 0.56287 * 18 17 16 20 20 C 1.47543 * 120.06339 * 179.68163 * 19 18 17 21 21 N 1.34778 * 119.99988 * 0.02783 * 20 19 18 22 22 O 1.21589 * 119.99489 * 180.02562 * 20 19 18 23 23 C 1.39795 * 119.86907 * 359.70797 * 19 18 17 24 24 C 1.37610 * 119.93924 * 359.97438 * 23 19 18 25 25 H 0.96998 * 119.99952 * 183.72340 * 1 2 3 26 26 H 1.07998 * 120.02793 * 359.96913 * 10 9 7 27 27 H 1.07996 * 119.69877 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.68216 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.99046 * 180.02562 * 13 12 11 30 30 H 0.97000 * 120.00588 * 70.44536 * 15 14 13 31 31 H 1.07998 * 119.96846 * 359.97384 * 17 16 15 32 32 H 1.08005 * 120.03351 * 180.29800 * 18 17 16 33 33 H 0.97003 * 119.99695 * 359.97438 * 21 20 19 34 34 H 0.96994 * 119.99505 * 179.97438 * 21 20 19 35 35 H 1.08011 * 120.03186 * 179.97438 * 23 19 18 36 36 H 1.07993 * 119.96815 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6962 1.2124 6 1 3.0965 1.6963 -1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 2.9504 -1.2918 0.5217 9 6 1.4834 -2.3288 -0.6829 10 6 0.5665 -2.1513 -1.7357 11 6 0.0636 -3.2370 -2.3913 12 6 0.4485 -4.5221 -2.0300 13 6 1.3468 -4.7245 -1.0004 14 6 1.8793 -3.6385 -0.3199 15 7 2.7866 -3.8350 0.7109 16 6 2.4110 -3.5815 2.0254 17 6 1.1024 -3.2022 2.3133 18 6 0.7263 -2.9562 3.6139 19 6 1.6625 -3.0759 4.6453 20 6 1.2641 -2.8060 6.0401 21 7 -0.0035 -2.4442 6.3209 22 8 2.0793 -2.9100 6.9361 23 6 2.9768 -3.4513 4.3525 24 6 3.3455 -3.7024 3.0507 25 1 -0.4850 -0.8383 0.0546 26 1 0.2611 -1.1565 -2.0245 27 1 -0.6401 -3.0961 -3.1983 28 1 0.0414 -5.3709 -2.5593 29 1 1.6391 -5.7280 -0.7286 30 1 3.6831 -4.1492 0.5148 31 1 0.3810 -3.1050 1.5155 32 1 -0.2900 -2.6668 3.8372 33 1 -0.6538 -2.3609 5.6059 34 1 -0.2655 -2.2671 7.2378 35 1 3.7023 -3.5442 5.1473 36 1 4.3607 -3.9929 2.8240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174050700.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:55 Heat of formation + Delta-G solvation = -1.637972 kcal Electronic energy + Delta-G solvation = -21286.613041 eV Core-core repulsion = 18120.350629 eV Total energy + Delta-G solvation = -3166.262412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73358 -38.74427 -37.35125 -34.61554 -34.03623 -33.45107 -30.45461 -29.72696 -29.55538 -27.64095 -25.13426 -23.06342 -22.37439 -21.15394 -20.64628 -19.81283 -18.05735 -17.88544 -16.75969 -16.54360 -15.97115 -14.85359 -14.60446 -14.57046 -14.34183 -14.06033 -13.65343 -13.50157 -12.87709 -12.81352 -12.49406 -12.30012 -12.11460 -11.91611 -11.53937 -11.05995 -10.80977 -10.53794 -10.50659 -10.31611 -9.93093 -9.71809 -9.51304 -9.44968 -9.01082 -8.50306 -7.84136 -7.82406 -7.47494 -6.73482 -4.59118 1.54105 1.98773 2.55869 2.66360 3.07837 3.17543 3.27124 3.36971 3.84643 3.87681 4.20377 4.35663 4.48833 5.22278 5.27610 5.32124 5.47537 5.79177 5.95908 6.02849 6.09900 6.13134 6.35379 6.50149 6.73051 6.77704 6.85127 6.90215 6.92533 6.99711 7.12556 7.29639 7.39895 7.55833 7.60426 7.62788 7.77426 7.94249 8.00548 8.26454 8.34412 8.55244 8.62739 8.78142 9.78954 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.006424 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.147865 B = 4357.296084 C = 5397.952769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 1.055 2.945 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.214 4.214 11 C -0.079 4.079 12 C -0.259 4.259 13 C -0.069 4.069 14 C -0.022 4.022 15 N -0.650 5.650 16 C 0.270 3.730 17 C -0.169 4.169 18 C -0.041 4.041 19 C -0.228 4.228 20 C 0.574 3.426 21 N -0.859 5.859 22 O -0.564 6.564 23 C -0.012 4.012 24 C -0.225 4.225 25 H 0.299 0.701 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.391 0.609 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.400 0.600 34 H 0.397 0.603 35 H 0.125 0.875 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 -2.851 3.588 4.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.178 4.178 3 Si 0.879 3.121 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.094 3.906 10 C -0.234 4.234 11 C -0.097 4.097 12 C -0.279 4.279 13 C -0.089 4.089 14 C -0.115 4.115 15 N -0.267 5.267 16 C 0.162 3.838 17 C -0.191 4.191 18 C -0.060 4.060 19 C -0.233 4.233 20 C 0.363 3.637 21 N -0.422 5.422 22 O -0.444 6.444 23 C -0.032 4.032 24 C -0.248 4.248 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.226 0.774 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.230 0.770 34 H 0.227 0.773 35 H 0.143 0.857 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.133 -1.292 3.836 4.050 hybrid contribution -0.011 -1.628 -0.217 1.642 sum 0.123 -2.920 3.620 4.652 Atomic orbital electron populations 1.70524 1.08396 1.34219 1.25870 1.27024 0.95423 1.04471 0.90924 0.83757 0.76078 0.73967 0.78346 1.19709 1.19851 1.19816 1.20401 1.07774 0.95144 1.29048 0.90264 1.17715 0.90809 0.91303 0.90749 1.20771 1.05286 0.97461 0.99854 1.20394 0.98103 0.93189 0.98041 1.20120 1.07478 0.95744 1.04580 1.20707 0.95938 0.96056 0.96181 1.17179 1.05141 0.92429 0.96789 1.41271 1.13945 1.69530 1.01921 1.18168 0.92697 0.88372 0.84544 1.20622 0.95649 1.06407 0.96429 1.20891 0.97694 0.95313 0.92150 1.19326 0.96007 1.16089 0.91899 1.18311 0.81576 0.74828 0.88959 1.43774 1.12234 1.73571 1.12625 1.90741 1.51297 1.53836 1.48500 1.20742 0.94374 0.92464 0.95604 1.20443 0.99037 1.13163 0.92159 0.88763 0.87840 0.89250 0.89164 0.89118 0.77362 0.85244 0.86748 0.77037 0.77261 0.85709 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.42 12.44 55.55 0.69 -17.73 16 2 C 0.05 1.10 4.71 -17.32 -0.08 1.02 16 3 Si 1.06 20.50 30.04 -169.99 -5.11 15.40 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.50 -11.83 7.35 -37.89 -0.28 -12.11 16 8 H 0.08 1.94 7.47 -52.49 -0.39 1.55 16 9 C 0.10 2.31 4.42 -106.64 -0.47 1.83 16 10 C -0.21 -4.95 8.14 -39.29 -0.32 -5.27 16 11 C -0.08 -1.67 9.97 -39.98 -0.40 -2.06 16 12 C -0.26 -5.28 10.03 -39.37 -0.40 -5.67 16 13 C -0.07 -1.40 9.96 -39.42 -0.39 -1.80 16 14 C -0.02 -0.47 4.82 -83.27 -0.40 -0.87 16 15 N -0.65 -12.27 4.76 -8.04 -0.04 -12.31 16 16 C 0.27 5.09 5.82 -83.84 -0.49 4.60 16 17 C -0.17 -3.27 8.42 -39.43 -0.33 -3.61 16 18 C -0.04 -0.69 9.53 -39.23 -0.37 -1.06 16 19 C -0.23 -3.91 5.88 -104.94 -0.62 -4.53 16 20 C 0.57 9.51 8.03 -12.47 -0.10 9.41 16 21 N -0.86 -10.35 8.82 30.46 0.27 -10.08 16 22 O -0.56 -11.08 17.17 5.29 0.09 -10.99 16 23 C -0.01 -0.21 9.58 -39.23 -0.38 -0.58 16 24 C -0.23 -3.81 9.87 -39.43 -0.39 -4.20 16 25 H 0.30 7.29 7.23 -40.82 -0.29 7.00 16 26 H 0.10 2.48 6.66 -52.49 -0.35 2.13 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.39 6.47 8.82 -40.82 -0.36 6.11 16 31 H 0.13 2.79 6.44 -52.49 -0.34 2.45 16 32 H 0.11 1.60 6.39 -52.48 -0.34 1.26 16 33 H 0.40 4.01 6.85 -40.82 -0.28 3.73 16 34 H 0.40 3.99 8.93 -40.82 -0.36 3.63 16 35 H 0.12 2.02 7.64 -52.48 -0.40 1.62 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -27.43 309.77 -8.44 -35.87 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -3.60 Total: 20.08 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -5.42 Total: -24.89 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.92 Total: -40.13 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.11 Total: 15.40 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.43 -8.44 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174050700.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.233 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds