Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47493 * 270.00256 * 3 2 1 5 5 H 1.48497 * 109.47045 * 30.00389 * 3 2 1 6 6 H 1.48509 * 109.47091 * 150.00249 * 3 2 1 7 7 C 1.38818 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00258 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99456 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99981 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47243 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47213 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99741 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99865 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.97000 * 120.00046 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00047 * 359.97438 * 9 7 2 25 25 H 1.09008 * 109.46987 * 59.99674 * 10 9 7 26 26 H 1.09003 * 109.46760 * 300.00082 * 10 9 7 27 27 H 1.09005 * 109.46552 * 60.00131 * 11 10 9 28 28 H 1.08991 * 109.47305 * 300.00242 * 11 10 9 29 29 H 1.09000 * 109.47214 * 59.99786 * 12 11 10 30 30 H 1.09000 * 109.46955 * 300.00002 * 12 11 10 31 31 H 0.96998 * 120.00681 * 359.97438 * 13 12 11 32 32 H 1.09000 * 109.47543 * 59.99570 * 16 14 13 33 33 H 1.09008 * 109.47338 * 300.00084 * 16 14 13 34 34 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 35 35 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 36 36 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 37 37 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 6 1.8288 -6.1447 -0.0037 13 7 0.8768 -7.2582 -0.0047 14 6 1.3261 -8.5289 -0.0048 15 8 2.5185 -8.7506 -0.0045 16 6 0.3468 -9.6743 -0.0052 17 6 1.1118 -10.9994 -0.0059 18 6 0.1324 -12.1448 -0.0057 19 6 -0.3677 -12.7290 -1.0956 20 6 -1.2523 -13.7647 -0.8484 21 6 -1.4700 -14.0219 0.4422 22 16 -0.5200 -12.9209 1.4315 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3881 -0.0016 25 1 2.6848 -3.7153 0.8872 26 1 2.6847 -3.7137 -0.8928 27 1 0.4368 -4.7613 -0.8929 28 1 0.4375 -4.7626 0.8870 29 1 2.4555 -6.2028 0.8862 30 1 2.4554 -6.2021 -0.8937 31 1 -0.0769 -7.0810 -0.0045 32 1 -0.2797 -9.6165 -0.8953 33 1 -0.2802 -9.6168 0.8847 34 1 1.7384 -11.0575 0.8841 35 1 1.7383 -11.0567 -0.8960 36 1 -0.1029 -12.4174 -2.0951 37 1 -1.7293 -14.3227 -1.6405 38 1 -2.1262 -14.7911 0.8216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175712656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -11.626000 kcal Electronic energy + Delta-G solvation = -18186.962592 eV Core-core repulsion = 15155.711018 eV Total energy + Delta-G solvation = -3031.251574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84676 -38.22875 -36.10673 -34.36903 -33.95723 -31.99695 -29.92227 -28.85131 -25.91152 -24.66061 -23.01916 -22.25187 -21.22687 -20.18371 -19.57499 -17.73205 -17.12788 -16.61089 -16.08019 -15.98108 -15.68636 -14.97204 -14.61927 -14.01572 -13.76964 -13.50188 -13.27689 -13.13117 -12.99371 -12.67426 -12.45337 -12.23891 -12.22048 -11.64494 -11.37829 -10.99729 -10.97120 -10.92916 -10.79395 -10.62929 -10.11769 -9.92961 -9.70772 -9.07497 -8.98171 -8.88867 -8.81533 -6.94553 -5.78194 -3.07144 0.64551 1.29423 1.67167 2.39571 2.55877 3.13856 3.43480 3.48562 3.50363 4.35126 4.58368 4.62739 4.70797 4.75489 4.90931 5.09689 5.18446 5.22586 5.29666 5.30246 5.48083 5.56602 5.61699 5.74786 5.82127 5.95393 5.98149 6.05189 6.15775 6.17974 6.30862 6.43874 6.77692 6.81961 7.43775 7.69419 8.14652 8.40805 9.51912 10.08973 10.43621 11.44811 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.052520 B = 0.001989 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.001538 B =14076.165206 C =14263.954752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.728 5.728 14 C 0.510 3.490 15 O -0.544 6.544 16 C -0.136 4.136 17 C -0.034 4.034 18 C -0.170 4.170 19 C -0.142 4.142 20 C -0.133 4.133 21 C -0.218 4.218 22 S 0.096 5.904 23 H 0.255 0.745 24 H 0.383 0.617 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -29.097 0.010 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.379 5.379 14 C 0.296 3.704 15 O -0.421 6.421 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.287 4.287 19 C -0.172 4.172 20 C -0.163 4.163 21 C -0.354 4.354 22 S 0.359 5.641 23 H 0.065 0.935 24 H 0.217 0.783 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.282 -28.930 1.579 29.158 hybrid contribution -0.697 0.791 -1.527 1.856 sum -3.980 -28.139 0.052 28.419 Atomic orbital electron populations 1.69657 1.05138 1.25693 1.57833 1.24762 0.95574 0.97786 1.03000 0.86158 0.78653 0.83661 0.77537 1.21687 1.21745 1.20712 1.19252 0.91117 0.84118 1.42649 0.91075 1.42340 1.05863 0.99993 1.89617 1.20524 0.93281 0.85202 0.98208 1.21943 0.99569 0.93350 1.02712 1.21365 0.91771 0.84636 1.02445 1.46110 1.10799 1.05857 1.75141 1.20595 0.89687 0.84041 0.76048 1.90714 1.16966 1.84848 1.49613 1.21688 0.98420 0.92556 1.05016 1.19873 0.94423 0.88046 1.05016 1.24566 1.05078 1.03433 0.95651 1.20179 0.99673 0.97835 0.99477 1.20190 1.00400 0.99314 0.96436 1.25625 1.07096 1.05746 0.96914 1.84398 1.40751 1.29088 1.09821 0.93500 0.78305 0.96057 0.96055 0.91297 0.91300 0.91364 0.91367 0.76452 0.88457 0.88670 0.89845 0.89019 0.84198 0.84345 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.81 9.99 -15.05 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 10 C 0.16 3.11 6.26 -4.05 -0.03 3.08 16 11 C -0.14 -2.08 5.44 -26.73 -0.15 -2.22 16 12 C 0.12 1.63 5.67 -4.04 -0.02 1.61 16 13 N -0.73 -8.01 5.56 -60.30 -0.33 -8.35 16 14 C 0.51 5.95 7.83 -10.98 -0.09 5.86 16 15 O -0.54 -8.49 15.98 5.56 0.09 -8.41 16 16 C -0.14 -1.09 5.68 -27.89 -0.16 -1.25 16 17 C -0.03 -0.29 5.00 -27.88 -0.14 -0.43 16 18 C -0.17 -1.39 5.76 -36.00 -0.21 -1.59 16 19 C -0.14 -1.07 10.05 -41.21 -0.41 -1.49 16 20 C -0.13 -0.92 10.18 -41.21 -0.42 -1.34 16 21 C -0.22 -1.50 11.23 29.04 0.33 -1.17 16 22 S 0.10 0.74 23.33 -107.50 -2.51 -1.77 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 25 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -33.31 340.79 -9.49 -42.80 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.70 Total: 6.18 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.54 Total: -6.44 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.05 Total: -54.99 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.31 -9.49 -42.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175712656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.172 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds