Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47068 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47080 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99832 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00007 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00058 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 119.99847 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46741 * 89.99999 * 18 16 14 20 20 H 1.48493 * 109.46976 * 210.00369 * 18 16 14 21 21 H 1.48500 * 109.46821 * 330.00162 * 18 16 14 22 22 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 23 23 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 26 26 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 27 27 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 28 28 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 29 29 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 30 30 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 31 31 H 1.08997 * 109.47012 * 299.99838 * 10 9 7 32 32 H 1.09004 * 109.47200 * 60.00185 * 10 9 7 33 33 H 1.08997 * 109.47320 * 300.00051 * 11 10 9 34 34 H 1.09001 * 109.46765 * 60.00680 * 11 10 9 35 35 H 1.09001 * 109.47662 * 300.00235 * 12 11 10 36 36 H 1.09002 * 109.47159 * 60.00151 * 12 11 10 37 37 H 0.96999 * 120.00403 * 0.02562 * 13 12 11 38 38 H 0.97004 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.5547 -1.7895 3.0486 11 6 8.9872 -2.3270 3.0485 12 6 9.4652 -2.5051 4.4910 13 7 10.8370 -3.0192 4.4909 14 6 11.4783 -3.2592 5.6768 15 1 10.9727 -3.0699 6.6121 16 6 12.7784 -3.7458 5.6768 17 7 13.3946 -3.9770 6.8166 18 14 13.6528 -4.0739 4.0589 19 1 14.3753 -2.8496 3.6297 20 1 14.6226 -5.1843 4.2368 21 1 12.6555 -4.4486 3.0244 22 16 2.5210 -1.4371 0.0077 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.3721 1.6351 0.0002 28 1 5.4136 -1.9379 -0.5135 29 1 6.0389 -0.2713 -0.5134 30 1 7.6874 -1.8398 0.9301 31 1 7.5269 -0.8285 3.5622 32 1 6.9023 -2.4953 3.5627 33 1 9.0147 -3.2881 2.5350 34 1 9.6399 -1.6215 2.5344 35 1 9.4378 -1.5438 5.0042 36 1 8.8125 -3.2103 5.0056 37 1 11.2911 -3.1895 3.6509 38 1 14.3029 -4.3174 6.8166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176921213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -4.499960 kcal Electronic energy + Delta-G solvation = -18412.051598 eV Core-core repulsion = 15381.109032 eV Total energy + Delta-G solvation = -3030.942566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90185 -38.10217 -36.19982 -34.48313 -33.37820 -32.04843 -30.58961 -29.58657 -26.04628 -24.78004 -23.11312 -22.20137 -21.34913 -20.54437 -19.07847 -17.68349 -17.25253 -17.01628 -16.08606 -15.80440 -15.31139 -14.73149 -14.54397 -14.26448 -13.92183 -13.57909 -13.47204 -13.27683 -12.97087 -12.80875 -12.50245 -12.20411 -12.07475 -12.00882 -11.68813 -11.21498 -11.05563 -10.94221 -10.85687 -10.72736 -10.19088 -9.99344 -9.61030 -9.14463 -8.92021 -8.69026 -8.63447 -7.26201 -5.78282 -3.14513 0.72899 1.37100 1.76258 2.47949 2.50768 3.14016 3.34810 3.37050 3.43117 4.31014 4.56945 4.57681 4.69423 4.79481 4.92958 4.94682 5.06361 5.16071 5.18636 5.28669 5.40619 5.48128 5.52122 5.57814 5.77661 5.90579 5.91790 5.94324 6.03023 6.12103 6.29059 6.34922 6.66734 6.69804 7.36158 7.97818 8.09568 8.40435 9.19122 9.91144 10.10603 11.40029 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.052941 B = 0.002280 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.764792 B =12280.437456 C =12442.752356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.139 4.139 4 C -0.123 4.123 5 C -0.161 4.161 6 C -0.071 4.071 7 C 0.509 3.491 8 O -0.528 6.528 9 N -0.729 5.729 10 C 0.123 3.877 11 C -0.141 4.141 12 C 0.160 3.840 13 N -0.757 5.757 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.887 3.113 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.278 1.278 22 S 0.108 5.892 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.360 0.640 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.552 8.321 -20.493 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.169 4.169 4 C -0.153 4.153 5 C -0.279 4.279 6 C -0.113 4.113 7 C 0.294 3.706 8 O -0.404 6.404 9 N -0.381 5.381 10 C -0.001 4.001 11 C -0.180 4.180 12 C 0.032 3.968 13 N -0.403 5.403 14 C -0.376 4.376 15 H 0.109 0.891 16 C -0.193 4.193 17 N -0.581 5.581 18 Si 0.717 3.283 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 S 0.373 5.627 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.193 0.807 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.334 6.943 -19.535 31.968 hybrid contribution 1.471 1.123 -1.368 2.301 sum -22.863 8.066 -20.903 32.011 Atomic orbital electron populations 1.20331 0.87897 1.03217 1.02605 1.24473 0.99919 0.95790 1.09726 1.20011 0.92815 0.99182 1.04913 1.20007 0.96330 0.95728 1.03260 1.23698 0.97153 0.96617 1.10397 1.20160 0.91968 1.03730 0.95426 1.20460 0.81703 0.77346 0.91081 1.90747 1.54369 1.49188 1.46048 1.46061 1.15249 1.67195 1.09638 1.21341 0.95227 1.01664 0.81862 1.21992 0.94399 1.01417 1.00146 1.20501 0.86692 0.97361 0.92218 1.42684 1.12047 1.80142 1.05378 1.19075 0.96097 1.36577 0.85823 0.89141 1.24701 0.96882 1.01299 0.96415 1.69704 1.13224 1.51287 1.23915 0.86508 0.79593 0.77841 0.84323 1.21068 1.21688 1.20411 1.84172 0.96279 1.09299 1.72993 0.90813 0.90540 0.91320 0.84474 0.84521 0.87820 0.86962 0.76571 0.91174 0.91199 0.91342 0.91334 0.95166 0.95214 0.80699 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.38 36.01 0.37 -0.14 16 2 C -0.18 -1.66 6.51 -36.00 -0.23 -1.89 16 3 C -0.14 -1.28 10.05 -41.21 -0.41 -1.70 16 4 C -0.12 -1.21 10.05 -41.21 -0.41 -1.62 16 5 C -0.16 -1.62 5.00 -36.00 -0.18 -1.81 16 6 C -0.07 -0.58 6.19 -29.04 -0.18 -0.76 16 7 C 0.51 5.95 7.82 -10.99 -0.09 5.87 16 8 O -0.53 -8.53 16.03 5.55 0.09 -8.45 16 9 N -0.73 -7.55 5.56 -60.30 -0.33 -7.89 16 10 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 11 C -0.14 -1.96 5.44 -26.73 -0.15 -2.11 16 12 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 13 N -0.76 -17.98 5.41 -59.91 -0.32 -18.30 16 14 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 17 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 18 Si 0.89 21.98 27.74 -169.99 -4.71 17.26 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 22 S 0.11 1.07 23.31 -107.50 -2.51 -1.44 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.40 2.95 8.47 -40.82 -0.35 2.60 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.36 8.22 5.53 -40.82 -0.23 7.99 16 38 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -35.24 338.16 -9.16 -44.40 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.66 Total: 4.85 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.58 Total: -6.83 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.12 Total: -54.90 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.24 -9.16 -44.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176921213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.900 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds