Wall clock time and date at job start Tue Mar 31 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48505 * 109.47305 * 275.29737 * 3 2 1 5 5 H 1.48494 * 109.47252 * 35.29931 * 3 2 1 6 6 H 1.48505 * 109.47082 * 155.29847 * 3 2 1 7 7 C 1.39930 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00119 * 346.76138 * 7 2 1 9 9 C 1.41406 * 119.99968 * 166.74838 * 7 2 1 10 10 C 1.40786 * 120.21210 * 331.37034 * 9 7 2 11 11 C 1.37643 * 119.89209 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32845 * 359.72142 * 11 10 9 13 13 C 1.39282 * 120.41949 * 0.55409 * 12 11 10 14 14 N 1.39829 * 119.94833 * 179.72152 * 13 12 11 15 15 C 1.34770 * 120.00065 * 326.44872 * 14 13 12 16 16 O 1.21801 * 120.00231 * 355.09909 * 15 14 13 17 17 C 1.41475 * 120.00281 * 175.10691 * 15 14 13 18 18 C 1.35631 * 120.00196 * 179.97438 * 17 15 14 19 19 C 1.41667 * 120.00336 * 179.97438 * 18 17 15 20 20 C 1.38281 * 126.26362 * 179.97438 * 19 18 17 21 21 C 1.39788 * 107.08168 * 179.78274 * 20 19 18 22 22 C 1.35511 * 107.90659 * 0.41348 * 21 20 19 23 23 N 1.35763 * 108.90991 * 359.58256 * 22 21 20 24 24 H 0.96996 * 125.68891 * 180.28582 * 23 22 21 25 25 C 1.38312 * 120.10232 * 359.44759 * 13 12 11 26 26 H 0.97001 * 120.00415 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.05120 * 359.97438 * 10 9 7 28 28 H 1.07995 * 119.83630 * 180.02562 * 11 10 9 29 29 H 1.07994 * 119.79518 * 180.27284 * 12 11 10 30 30 H 0.96998 * 120.00132 * 146.44373 * 14 13 12 31 31 H 1.08003 * 119.99397 * 359.97438 * 17 15 14 32 32 H 1.08003 * 120.00407 * 359.97438 * 18 17 15 33 33 H 1.08000 * 126.45993 * 0.03387 * 20 19 18 34 34 H 1.07992 * 126.05094 * 180.28375 * 21 20 19 35 35 H 1.08000 * 125.54338 * 179.84061 * 22 21 20 36 36 H 1.08003 * 120.16251 * 180.24974 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3778 2.1112 -1.3941 5 1 1.5001 2.6177 0.8090 6 1 3.5913 1.4105 0.5851 7 6 2.0080 -1.2118 0.0005 8 1 1.4896 -2.1346 0.2151 9 6 3.3938 -1.2282 -0.2802 10 6 3.9600 -0.2427 -1.1111 11 6 5.3097 -0.2652 -1.3804 12 6 6.1158 -1.2499 -0.8331 13 6 5.5688 -2.2346 -0.0139 14 7 6.3907 -3.2272 0.5286 15 6 7.4504 -3.6806 -0.1698 16 8 7.6413 -3.2916 -1.3081 17 6 8.3412 -4.6086 0.4192 18 6 9.4074 -5.0653 -0.2837 19 6 10.2997 -5.9941 0.3062 20 6 11.4213 -6.5421 -0.2887 21 6 12.0059 -7.3991 0.6483 22 6 11.2466 -7.3698 1.7703 23 7 10.2082 -6.5169 1.5768 24 1 9.5174 -6.3100 2.2255 25 6 4.2148 -2.2288 0.2683 26 1 -0.4851 0.8400 -0.0004 27 1 3.3363 0.5291 -1.5371 28 1 5.7431 0.4914 -2.0175 29 1 7.1744 -1.2568 -1.0466 30 1 6.1981 -3.5895 1.4075 31 1 8.1721 -4.9534 1.4287 32 1 9.5763 -4.7208 -1.2933 33 1 11.7804 -6.3423 -1.2875 34 1 12.9026 -7.9829 0.5029 35 1 11.4388 -7.9304 2.6732 36 1 3.7902 -2.9895 0.9067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177940396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:52 Heat of formation + Delta-G solvation = 49.398819 kcal Electronic energy + Delta-G solvation = -19948.805822 eV Core-core repulsion = 16784.756531 eV Total energy + Delta-G solvation = -3164.049291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39850 -39.92145 -37.55474 -34.58323 -33.87932 -33.19790 -31.38163 -30.30944 -29.49243 -28.05424 -25.12389 -24.18465 -21.68421 -21.11595 -20.79581 -20.43847 -19.32818 -18.09339 -17.54367 -16.79472 -15.98900 -15.40556 -14.92461 -14.57707 -14.41071 -14.22513 -14.13524 -13.88092 -13.50118 -12.69172 -12.66814 -12.65583 -12.42009 -12.18983 -12.04774 -11.65729 -11.04004 -10.76021 -10.61639 -10.42530 -10.16415 -9.68841 -9.56701 -9.35910 -9.29032 -8.94212 -7.94735 -7.67090 -7.09535 -6.90998 -4.49333 0.50700 2.21980 2.53044 2.65228 2.86255 2.90009 3.13797 3.24496 3.34385 3.64199 3.68569 4.00599 4.55293 4.71055 4.79066 4.85838 5.03751 5.14935 5.35393 5.45045 5.65504 5.81188 5.99839 6.06369 6.14011 6.34933 6.41121 6.56526 6.59765 6.70326 6.74530 6.82605 7.14226 7.16824 7.34881 7.49944 7.67451 7.86107 7.94488 8.14788 8.35601 8.56136 8.66654 8.82351 10.11627 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.002875 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.689759 B = 9738.345837 C =10064.203694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.105 3.895 10 C -0.242 4.242 11 C -0.068 4.068 12 C -0.229 4.229 13 C 0.168 3.832 14 N -0.666 5.666 15 C 0.544 3.456 16 O -0.531 6.531 17 C -0.237 4.237 18 C 0.022 3.978 19 C 0.008 3.992 20 C -0.145 4.145 21 C -0.208 4.208 22 C 0.011 3.989 23 N -0.545 5.545 24 H 0.417 0.583 25 C -0.233 4.233 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.401 0.599 31 H 0.114 0.886 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.168 0.832 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.508 -10.890 5.353 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.164 1.164 7 C -0.476 4.476 8 H 0.107 0.893 9 C 0.101 3.899 10 C -0.261 4.261 11 C -0.087 4.087 12 C -0.250 4.250 13 C 0.075 3.925 14 N -0.309 5.309 15 C 0.336 3.664 16 O -0.410 6.410 17 C -0.259 4.259 18 C 0.001 3.999 19 C -0.102 4.102 20 C -0.170 4.170 21 C -0.232 4.232 22 C -0.124 4.124 23 N -0.139 5.139 24 H 0.255 0.745 25 C -0.255 4.255 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.236 0.764 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.185 0.815 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.266 -10.504 4.687 21.586 hybrid contribution -0.307 0.540 0.855 1.057 sum 17.959 -9.963 5.543 21.273 Atomic orbital electron populations 1.69659 1.07998 1.30154 1.36130 1.26157 0.94821 1.01729 0.90905 0.86281 0.81219 0.79542 0.78691 1.19844 1.22283 1.16386 1.19446 0.91402 0.95617 1.41088 0.89251 1.17490 0.93068 0.90388 0.88911 1.20995 0.95031 1.03861 1.06236 1.20478 0.93593 0.96831 0.97825 1.20355 0.99084 0.98004 1.07523 1.17503 0.89424 0.88254 0.97280 1.43435 1.27878 1.39089 1.20486 1.16930 0.81518 0.81956 0.86030 1.90856 1.73636 1.58900 1.17581 1.21759 0.98956 1.04063 1.01164 1.20846 0.89936 0.89616 0.99502 1.18324 1.01036 1.04370 0.86483 1.21548 0.95441 0.99826 1.00162 1.20895 1.02758 1.05366 0.94222 1.22065 0.90764 0.98382 1.01162 1.42212 1.23409 1.35030 1.13254 0.74528 1.20692 0.90410 1.05157 1.09204 0.90502 0.88372 0.88441 0.87375 0.76441 0.86811 0.83094 0.83747 0.84213 0.81494 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.97 13.93 55.55 0.77 -21.20 16 2 C 0.08 2.17 5.47 -17.35 -0.09 2.08 16 3 Si 0.91 21.13 24.37 -169.99 -4.14 16.99 16 4 H -0.27 -6.14 6.77 56.52 0.38 -5.75 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.65 6.48 56.52 0.37 -5.29 16 7 C -0.45 -12.19 9.61 -37.74 -0.36 -12.55 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.11 2.71 5.19 -106.85 -0.55 2.15 16 10 C -0.24 -6.02 6.91 -38.84 -0.27 -6.29 16 11 C -0.07 -1.58 10.01 -39.69 -0.40 -1.97 16 12 C -0.23 -5.21 8.66 -39.09 -0.34 -5.55 16 13 C 0.17 3.65 6.26 -83.79 -0.52 3.12 16 14 N -0.67 -11.38 5.32 -12.55 -0.07 -11.45 16 15 C 0.54 9.12 7.29 -15.03 -0.11 9.01 16 16 O -0.53 -10.93 13.77 5.10 0.07 -10.86 16 17 C -0.24 -2.84 9.39 -39.28 -0.37 -3.21 16 18 C 0.02 0.24 9.40 -39.21 -0.37 -0.13 16 19 C 0.01 0.08 6.74 -83.91 -0.57 -0.49 16 20 C -0.14 -1.34 10.86 -38.99 -0.42 -1.77 16 21 C -0.21 -1.66 10.81 -39.98 -0.43 -2.09 16 22 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 23 N -0.54 -4.14 5.94 -10.56 -0.06 -4.20 16 24 H 0.42 2.21 7.87 -40.82 -0.32 1.89 16 25 C -0.23 -5.44 9.70 -38.67 -0.38 -5.81 16 26 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 27 H 0.10 2.42 4.20 -52.49 -0.22 2.20 16 28 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 29 H 0.11 2.42 6.39 -52.49 -0.34 2.09 16 30 H 0.40 5.32 8.77 -40.82 -0.36 4.97 16 31 H 0.11 0.98 6.93 -52.48 -0.36 0.61 16 32 H 0.15 1.79 7.46 -52.48 -0.39 1.40 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -32.45 310.17 -7.85 -40.31 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.72 Total: 9.34 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -5.38 Total: -23.61 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.64 Total: -36.85 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.45 -7.85 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177940396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.706 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds