Wall clock time and date at job start Tue Mar 31 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34234 * 116.99652 * 2 1 4 4 O 1.20819 * 120.00439 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99868 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47359 * 305.00946 * 5 3 2 7 7 C 1.53011 * 109.46956 * 65.00403 * 5 3 2 8 8 C 1.50697 * 109.47155 * 184.99913 * 7 5 3 9 9 C 1.38244 * 119.97201 * 89.99868 * 8 7 5 10 10 C 1.38205 * 120.02298 * 179.97438 * 9 8 7 11 11 C 1.38459 * 119.97412 * 0.24026 * 10 9 8 12 12 F 1.35099 * 120.02759 * 179.72396 * 11 10 9 13 13 C 1.38466 * 119.94836 * 359.48301 * 11 10 9 14 14 C 1.38196 * 119.97140 * 0.53984 * 13 11 10 15 15 O 1.42901 * 109.47461 * 185.00059 * 5 3 2 16 16 C 1.42904 * 113.99629 * 90.00090 * 15 5 3 17 17 C 1.50696 * 109.46709 * 180.02562 * 16 15 5 18 18 H 1.07999 * 120.00598 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00002 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47163 * 59.99646 * 21 19 17 23 23 H 1.48505 * 109.46990 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46708 * 299.99686 * 21 19 17 25 25 H 1.09002 * 109.47598 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47395 * 299.99666 * 1 2 3 27 27 H 1.09006 * 109.47796 * 59.99704 * 1 2 3 28 28 H 1.08994 * 109.46802 * 64.99980 * 7 5 3 29 29 H 1.09000 * 109.46596 * 305.00021 * 7 5 3 30 30 H 1.07999 * 119.98898 * 359.97438 * 9 8 7 31 31 H 1.08002 * 120.00949 * 179.97438 * 10 9 8 32 32 H 1.07997 * 120.00962 * 180.25357 * 13 11 10 33 33 H 1.07999 * 119.98560 * 179.70313 * 14 13 11 34 34 H 1.08993 * 109.47102 * 300.00461 * 16 15 5 35 35 H 1.08999 * 109.46825 * 60.00635 * 16 15 5 36 36 H 0.97003 * 119.99369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9596 0.7054 0.8426 7 6 4.1079 0.6927 -1.3066 8 6 5.6136 0.6585 -1.2553 9 6 6.2627 -0.4566 -0.7590 10 6 7.6435 -0.4893 -0.7120 11 6 8.3767 0.5974 -1.1577 12 9 9.7265 0.5688 -1.1070 13 6 7.7257 1.7115 -1.6599 14 6 6.3448 1.7420 -1.7054 15 8 3.9716 2.6403 0.1179 16 6 4.1420 3.0821 1.4662 17 6 4.5670 4.5279 1.4710 18 1 4.6948 5.0563 0.5379 19 6 4.7939 5.1757 2.6668 20 7 4.6388 4.5320 3.8031 21 14 5.3202 6.9681 2.6728 22 1 4.2777 7.7923 2.0104 23 1 5.4985 7.4269 4.0739 24 1 6.6034 7.1096 1.9390 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8900 28 1 3.7868 1.3148 -2.1420 29 1 3.7258 -0.3195 -1.4393 30 1 5.6904 -1.3026 -0.4079 31 1 8.1503 -1.3605 -0.3239 32 1 8.2967 2.5580 -2.0115 33 1 5.8367 2.6128 -2.0926 34 1 3.1996 2.9790 2.0041 35 1 4.9064 2.4766 1.9531 36 1 4.7981 4.9880 4.6443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:30 Heat of formation + Delta-G solvation = -158.641465 kcal Electronic energy + Delta-G solvation = -21895.813769 eV Core-core repulsion = 18259.681199 eV Total energy + Delta-G solvation = -3636.132570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.73906 -40.27987 -39.01447 -37.14310 -35.81133 -33.33944 -32.38092 -30.96687 -29.33771 -27.54138 -26.78310 -24.26441 -22.92358 -22.48782 -21.23825 -20.43669 -17.56475 -17.48725 -16.83674 -16.49463 -16.21986 -16.10127 -15.43871 -15.36620 -15.27542 -14.39617 -14.02307 -13.92650 -13.53606 -13.42858 -13.23451 -12.88744 -12.63556 -12.31478 -12.04222 -11.85422 -11.70679 -11.47203 -10.93626 -10.89628 -10.83248 -10.68381 -10.59177 -10.22506 -10.10967 -9.21786 -9.02413 -8.91168 -8.40040 -8.26300 -6.13268 -4.14908 1.26685 1.42007 2.53778 2.90235 3.31926 3.34463 3.38205 3.74644 4.27899 4.41821 4.60314 4.79878 4.87835 5.02879 5.13103 5.19522 5.23768 5.26770 5.31955 5.40268 5.45136 5.49296 5.61494 5.78051 5.97298 6.10550 6.18617 6.26625 6.42386 6.59144 6.70891 6.93778 7.05689 7.34008 7.71274 8.00647 8.10048 8.40621 8.93883 9.48934 10.98378 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.007290 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.424042 B = 3839.746461 C = 6448.271017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.431 3.569 4 O -0.481 6.481 5 C 0.107 3.893 6 H 0.092 0.908 7 C -0.068 4.068 8 C -0.086 4.086 9 C -0.088 4.088 10 C -0.158 4.158 11 C 0.091 3.909 12 F -0.145 7.145 13 C -0.152 4.152 14 C -0.058 4.058 15 O -0.352 6.352 16 C 0.194 3.806 17 C -0.512 4.512 18 H 0.067 0.933 19 C 0.058 3.942 20 N -0.898 5.898 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -12.910 -10.104 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.272 3.728 4 O -0.365 6.365 5 C 0.046 3.954 6 H 0.110 0.890 7 C -0.106 4.106 8 C -0.086 4.086 9 C -0.106 4.106 10 C -0.177 4.177 11 C 0.072 3.928 12 F -0.124 7.124 13 C -0.170 4.170 14 C -0.076 4.076 15 O -0.270 6.270 16 C 0.120 3.880 17 C -0.550 4.550 18 H 0.086 0.914 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.123 -12.428 -10.048 15.982 hybrid contribution 0.166 0.916 0.634 1.126 sum 0.044 -11.512 -9.414 14.871 Atomic orbital electron populations 1.23183 0.77253 1.03089 1.02454 1.86518 1.22854 1.34325 1.84713 1.25149 0.93305 0.81377 0.72969 1.90689 1.66576 1.36237 1.42960 1.21475 0.84794 0.89419 0.99742 0.88994 1.20614 0.91520 1.01880 0.96564 1.19678 0.95061 0.94280 0.99605 1.20890 0.93316 0.98171 0.98262 1.21022 0.94625 0.98399 1.03628 1.17743 0.76653 0.96245 1.02121 1.91471 1.29521 1.96918 1.94505 1.21154 0.95503 0.97678 1.02705 1.21003 0.92472 0.97663 0.96433 1.88048 1.85504 1.21216 1.32242 1.20399 0.95388 0.95671 0.76539 1.20902 1.46128 0.94767 0.93226 0.91443 1.24924 0.95424 0.98980 0.95020 1.69948 1.49105 1.37128 0.97492 0.86388 0.79249 0.83811 0.77017 1.19959 1.21120 1.19947 0.88494 0.92072 0.92192 0.89498 0.88813 0.85046 0.85075 0.84859 0.84428 0.97387 0.97228 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.55 101.05 1.07 1.46 16 2 O -0.37 -5.38 10.53 -39.27 -0.41 -5.80 16 3 C 0.43 7.86 7.24 36.01 0.26 8.12 16 4 O -0.48 -10.65 16.25 -25.46 -0.41 -11.06 16 5 C 0.11 1.90 2.61 -27.88 -0.07 1.82 16 6 H 0.09 1.56 7.79 -51.93 -0.40 1.16 16 7 C -0.07 -0.92 5.04 -27.88 -0.14 -1.06 16 8 C -0.09 -1.19 4.97 -104.62 -0.52 -1.71 16 9 C -0.09 -1.09 9.70 -39.59 -0.38 -1.47 16 10 C -0.16 -2.01 10.03 -39.51 -0.40 -2.40 16 11 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 12 F -0.15 -2.13 17.27 2.25 0.04 -2.09 16 13 C -0.15 -2.17 10.03 -39.51 -0.40 -2.57 16 14 C -0.06 -0.85 9.40 -39.59 -0.37 -1.22 16 15 O -0.35 -8.07 9.01 -55.14 -0.50 -8.56 16 16 C 0.19 5.24 5.49 36.00 0.20 5.43 16 17 C -0.51 -14.98 9.43 -34.44 -0.32 -15.30 16 18 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 21 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.09 0.98 8.06 -51.93 -0.42 0.57 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.01 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -33.65 327.38 -6.69 -40.34 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.59 Total: -2.28 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.47 Total: -6.30 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.32 Total: -25.42 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.65 -6.69 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.303 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds