Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00333 * 2 1 4 4 O 1.20832 * 119.99602 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00687 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46670 * 59.99835 * 5 3 2 7 7 O 1.42899 * 109.47377 * 180.02562 * 5 3 2 8 8 C 1.42903 * 113.99629 * 270.00006 * 7 5 3 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00636 * 14 12 10 16 16 H 1.48494 * 109.47178 * 210.00332 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00579 * 14 12 10 18 18 C 1.50704 * 109.46823 * 300.00346 * 5 3 2 19 19 C 1.38249 * 119.96803 * 279.71918 * 18 5 3 20 20 C 1.38205 * 120.02149 * 179.76950 * 19 18 5 21 21 C 1.38459 * 119.97214 * 0.50923 * 20 19 18 22 22 F 1.35097 * 120.02451 * 179.76965 * 21 20 19 23 23 C 1.38460 * 119.94724 * 359.74350 * 21 20 19 24 24 C 1.38187 * 119.97849 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47158 * 60.00742 * 1 2 3 26 26 H 1.09007 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47530 * 299.99892 * 1 2 3 28 28 H 1.09002 * 109.47382 * 59.99956 * 8 7 5 29 29 H 1.09001 * 109.46938 * 299.99942 * 8 7 5 30 30 H 1.09001 * 109.47194 * 299.99575 * 9 8 7 31 31 H 1.08992 * 109.47399 * 59.99748 * 9 8 7 32 32 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 33 33 H 1.07993 * 119.98898 * 0.02688 * 19 18 5 34 34 H 1.08000 * 120.01278 * 180.25718 * 20 19 18 35 35 H 1.08009 * 120.00705 * 179.97438 * 23 21 20 36 36 H 1.08002 * 119.98988 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 8 3.9715 2.6453 0.0011 8 6 4.1367 3.2029 -1.3043 9 6 4.5697 4.6653 -1.1829 10 6 4.7446 5.2532 -2.5595 11 1 4.5645 4.6448 -3.4334 12 6 5.1336 6.5682 -2.7032 13 7 5.3524 7.3092 -1.6390 14 14 5.3510 7.2967 -4.4095 15 1 4.0660 7.8868 -4.8632 16 1 6.3934 8.3535 -4.3673 17 1 5.7664 6.2290 -5.3543 18 6 4.1047 0.5919 1.2314 19 6 4.1089 1.2563 2.4438 20 6 4.5979 0.6294 3.5742 21 6 5.0934 -0.6608 3.4899 22 9 5.5760 -1.2730 4.5933 23 6 5.0934 -1.3232 2.2741 24 6 4.5995 -0.6960 1.1461 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1923 3.1469 -1.8456 29 1 4.8992 2.6422 -1.8450 30 1 3.8075 5.2262 -0.6421 31 1 5.5142 4.7209 -0.6418 32 1 5.6257 8.2345 -1.7401 33 1 3.7262 2.2641 2.5084 34 1 4.5974 1.1470 4.5220 35 1 5.4800 -2.3295 2.2072 36 1 4.5990 -1.2127 0.1977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -155.397533 kcal Electronic energy + Delta-G solvation = -21544.690917 eV Core-core repulsion = 17908.699014 eV Total energy + Delta-G solvation = -3635.991903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.02412 -40.67526 -39.12726 -37.52457 -36.11584 -33.39891 -32.04508 -31.27510 -29.72509 -28.34054 -26.32493 -24.58183 -23.16835 -22.39304 -20.95794 -20.77784 -18.00266 -17.68449 -17.19267 -16.81030 -16.51470 -16.19041 -15.70496 -15.61689 -15.10249 -14.59780 -14.44875 -14.31083 -13.68887 -13.53435 -13.25556 -13.10970 -12.77704 -12.48164 -12.22519 -12.05347 -11.57749 -11.29250 -11.16474 -10.85821 -10.85028 -10.79644 -10.56766 -10.27941 -9.60511 -9.24817 -9.22909 -9.15839 -8.73073 -8.38239 -6.04803 -4.08767 0.91022 1.12452 2.22232 2.60839 3.30413 3.35812 3.38006 3.40975 4.01639 4.10966 4.43067 4.53489 4.65303 4.73249 4.87161 5.02877 5.03826 5.12280 5.18013 5.31521 5.31570 5.43483 5.74553 5.82079 5.96753 6.04712 6.12433 6.18530 6.33408 6.35043 6.72464 6.77543 7.26558 7.68297 7.75136 7.83534 8.01145 8.31119 8.97045 9.54942 11.06812 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.004003 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.967998 B = 6993.132757 C = 8059.372842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.437 3.563 4 O -0.478 6.478 5 C 0.144 3.856 6 H 0.106 0.894 7 O -0.348 6.348 8 C 0.063 3.937 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.095 4.095 19 C -0.054 4.054 20 C -0.156 4.156 21 C 0.102 3.898 22 F -0.141 7.141 23 C -0.158 4.158 24 C -0.066 4.066 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -19.372 7.122 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.277 3.723 4 O -0.363 6.363 5 C 0.083 3.917 6 H 0.124 0.876 7 O -0.266 6.266 8 C -0.012 4.012 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.096 4.096 19 C -0.072 4.072 20 C -0.175 4.175 21 C 0.083 3.917 22 F -0.120 7.120 23 C -0.176 4.176 24 C -0.084 4.084 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.634 -18.777 7.382 20.701 hybrid contribution -0.111 0.369 -0.957 1.032 sum -4.745 -18.408 6.425 20.066 Atomic orbital electron populations 1.23236 0.76691 1.03390 1.02614 1.86507 1.23164 1.33631 1.84371 1.24678 0.92695 0.81712 0.73193 1.90727 1.66352 1.36162 1.43044 1.20155 0.85814 0.87711 0.97990 0.87620 1.88129 1.85993 1.20564 1.31936 1.23183 0.98670 0.98365 0.80962 1.19060 0.97557 0.86534 0.97764 1.21009 1.47004 0.96507 0.91798 0.92524 1.24979 0.95215 0.97017 0.96959 1.69975 1.46311 1.07996 1.28541 0.86519 0.77919 0.78920 0.84200 1.20560 1.21087 1.19805 1.19412 1.01741 0.94594 0.93817 1.21018 0.95455 1.00106 0.90619 1.21170 1.02038 0.93841 1.00443 1.17786 0.98727 0.92117 0.83077 1.91493 1.85771 1.82947 1.51795 1.21034 1.03918 1.01322 0.91354 1.20811 0.95553 0.93392 0.98610 0.91892 0.88255 0.91998 0.93975 0.93890 0.95403 0.95536 0.92796 0.83929 0.84435 0.84457 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.63 10.48 -39.25 -0.41 -5.04 16 3 C 0.44 6.90 7.27 36.01 0.26 7.16 16 4 O -0.48 -9.30 16.22 -25.48 -0.41 -9.71 16 5 C 0.14 2.16 2.83 -29.03 -0.08 2.08 16 6 H 0.11 1.32 7.65 -51.93 -0.40 0.92 16 7 O -0.35 -6.79 8.84 -55.18 -0.49 -7.28 16 8 C 0.06 1.36 5.65 37.16 0.21 1.57 16 9 C 0.03 0.75 5.34 -27.88 -0.15 0.60 16 10 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 14 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.10 -1.25 4.90 -104.61 -0.51 -1.76 16 19 C -0.05 -0.72 9.35 -39.59 -0.37 -1.09 16 20 C -0.16 -1.83 10.03 -39.51 -0.40 -2.23 16 21 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 22 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 23 C -0.16 -1.59 10.03 -39.52 -0.40 -1.98 16 24 C -0.07 -0.69 9.67 -39.60 -0.38 -1.07 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.14 2.03 7.77 -52.49 -0.41 1.62 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.14 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -32.99 326.98 -6.65 -39.64 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.57 Total: -3.31 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.45 Total: -8.01 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.31 Total: -22.03 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.99 -6.65 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.757 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds