Wall clock time and date at job start Tue Mar 31 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38437 * 119.82251 * 2 1 4 4 C 1.37852 * 120.18157 * 179.97438 * 3 2 1 5 5 C 1.39933 * 119.81821 * 0.03254 * 4 3 2 6 6 C 1.47088 * 120.17768 * 180.02562 * 5 4 3 7 7 C 1.35051 * 119.99783 * 179.97438 * 6 5 4 8 8 C 1.46536 * 120.00000 * 179.97438 * 7 6 5 9 9 C 1.40514 * 119.94006 * 359.72156 * 8 7 6 10 10 C 1.35961 * 120.08773 * 179.97438 * 9 8 7 11 11 C 1.41138 * 119.98283 * 0.02562 * 10 9 8 12 12 C 1.40755 * 120.05884 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00346 * 204.87428 * 12 11 10 14 14 C 1.39988 * 119.99809 * 24.86280 * 12 11 10 15 15 N 1.30810 * 120.00318 * 18.03028 * 14 12 11 16 16 Si 1.86805 * 119.99955 * 198.03253 * 14 12 11 17 17 H 1.48504 * 109.47251 * 60.00009 * 16 14 12 18 18 H 1.48504 * 109.46996 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47103 * 299.99964 * 16 14 12 20 20 C 1.41014 * 119.88861 * 359.97438 * 11 10 9 21 21 C 1.36227 * 119.90770 * 359.74094 * 20 11 10 22 22 F 1.35099 * 119.99345 * 180.27108 * 21 20 11 23 23 C 1.39935 * 119.64663 * 0.26349 * 5 4 3 24 24 C 1.37866 * 119.81242 * 359.41095 * 23 5 4 25 25 H 1.09006 * 109.46712 * 89.99798 * 1 2 3 26 26 H 1.08997 * 109.47620 * 209.99588 * 1 2 3 27 27 H 1.08997 * 109.47546 * 330.00253 * 1 2 3 28 28 H 1.08005 * 119.90598 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.09114 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.99756 * 359.97438 * 6 5 4 31 31 H 1.08004 * 120.00487 * 359.72345 * 7 6 5 32 32 H 1.08003 * 119.96032 * 359.96016 * 9 8 7 33 33 H 1.08010 * 120.01056 * 180.02562 * 10 9 8 34 34 H 0.97004 * 120.00176 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.04138 * 179.97438 * 20 11 10 36 36 H 1.07991 * 120.09138 * 179.72657 * 23 5 4 37 37 H 1.08001 * 119.90444 * 180.29839 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1954 1.2010 0.0000 4 6 3.5739 1.2097 0.0005 5 6 4.2773 0.0000 0.0004 6 6 5.7482 0.0000 0.0015 7 6 6.4234 -1.1696 0.0019 8 6 7.8887 -1.1697 0.0025 9 6 8.5901 0.0479 -0.0033 10 6 9.9497 0.0513 -0.0023 11 6 10.6581 -1.1694 0.0040 12 6 12.0657 -1.1677 0.0046 13 1 12.6069 -2.0175 -0.3844 14 6 12.7640 -0.0643 0.5091 15 7 12.1569 0.7940 1.2874 16 14 14.5631 0.1823 0.0709 17 1 14.7004 0.3138 -1.4019 18 1 15.0681 1.4149 0.7276 19 1 15.3513 -0.9859 0.5392 20 6 9.9534 -2.3908 0.0098 21 6 8.5911 -2.3890 0.0146 22 9 7.9142 -3.5581 0.0257 23 6 3.5739 -1.2097 -0.0059 24 6 2.1953 -1.2010 0.0004 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.6509 2.1338 0.0004 29 1 4.1095 2.1475 0.0001 30 1 6.2881 0.9353 0.0021 31 1 5.8834 -2.1050 0.0059 32 1 8.0485 0.9823 -0.0088 33 1 10.4876 0.9880 -0.0063 34 1 12.6409 1.5584 1.6373 35 1 10.4930 -3.3263 0.0143 36 1 4.1095 -2.1474 -0.0105 37 1 1.6510 -2.1338 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206160197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:08 Heat of formation + Delta-G solvation = -9.851454 kcal Electronic energy + Delta-G solvation = -19851.777365 eV Core-core repulsion = 16665.238828 eV Total energy + Delta-G solvation = -3186.538537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.91219 -39.06830 -37.68375 -34.85252 -33.64578 -31.65852 -30.73996 -29.36643 -29.04436 -26.81991 -24.74138 -22.78306 -22.04288 -21.30783 -20.61533 -18.65510 -17.88968 -16.47855 -15.60067 -15.37251 -15.16522 -14.93600 -14.62350 -14.56350 -14.20593 -13.73437 -13.36848 -13.15957 -12.91807 -12.69813 -12.36556 -12.21429 -12.15386 -11.93114 -11.42067 -11.33907 -11.27341 -11.02226 -10.80082 -10.64563 -10.57429 -10.10187 -9.84476 -9.68115 -9.31577 -8.74953 -8.22876 -7.67974 -7.18148 -6.88160 -4.65729 1.09827 1.63988 2.21509 2.76253 2.85538 2.89029 2.91986 3.40089 3.65607 4.15708 4.42153 4.94403 4.97912 5.16399 5.31383 5.33128 5.35492 5.46557 5.54897 5.64586 5.70349 5.79100 5.83223 6.09423 6.12162 6.24022 6.38569 6.49659 6.62840 6.66871 6.73169 6.76239 6.77823 6.86279 7.21513 7.26401 7.29780 7.34626 7.55017 7.73222 7.84287 7.90241 8.27115 8.46630 8.58992 9.75393 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.003092 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.474895 B = 9054.827928 C = 9798.125278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.114 4.114 4 C -0.127 4.127 5 C -0.016 4.016 6 C -0.212 4.212 7 C -0.022 4.022 8 C -0.252 4.252 9 C -0.052 4.052 10 C -0.180 4.180 11 C 0.137 3.863 12 C -0.431 4.431 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.918 3.082 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.261 1.261 20 C -0.269 4.269 21 C 0.149 3.851 22 F -0.163 7.163 23 C -0.133 4.133 24 C -0.112 4.112 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.290 0.710 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 1.433 -1.579 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.132 4.132 4 C -0.145 4.145 5 C -0.016 4.016 6 C -0.230 4.230 7 C -0.040 4.040 8 C -0.254 4.254 9 C -0.070 4.070 10 C -0.199 4.199 11 C 0.134 3.866 12 C -0.457 4.457 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.387 5.387 16 Si 0.741 3.259 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.185 1.185 20 C -0.290 4.290 21 C 0.130 3.870 22 F -0.142 7.142 23 C -0.151 4.151 24 C -0.130 4.130 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.830 1.610 -1.413 11.040 hybrid contribution 0.735 -0.061 -0.020 0.738 sum -10.095 1.549 -1.433 10.313 Atomic orbital electron populations 1.20714 0.91794 1.02212 1.01759 1.19847 0.95605 0.93292 1.03019 1.20856 0.94148 0.97076 1.01154 1.21249 0.93842 0.97439 1.02018 1.19136 0.93585 0.92629 0.96224 1.21643 0.90592 0.98277 1.12490 1.21890 0.92841 0.96906 0.92331 1.18173 0.91611 0.91980 1.23640 1.20505 0.94302 0.95007 0.97196 1.21033 0.92661 0.98711 1.07518 1.17506 0.93261 0.90202 0.85669 1.19728 0.91552 1.01913 1.32551 0.89437 1.26125 1.01996 0.94458 0.92457 1.69805 1.39315 1.10110 1.19460 0.86185 0.80456 0.78932 0.80338 1.18315 1.19890 1.18538 1.20611 0.91358 0.98796 1.18199 1.17417 0.89928 0.79452 1.00165 1.91335 1.81167 1.47508 1.94153 1.21367 0.93923 0.97853 1.01911 1.20868 0.94108 0.97126 1.00937 0.91745 0.91992 0.92012 0.86669 0.86238 0.86584 0.87722 0.87852 0.85892 0.89873 0.87450 0.86045 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.00 36.00 0.36 -0.65 16 2 C -0.12 -1.49 5.89 -104.48 -0.62 -2.10 16 3 C -0.11 -1.48 9.68 -39.65 -0.38 -1.87 16 4 C -0.13 -1.86 9.80 -39.09 -0.38 -2.25 16 5 C -0.02 -0.26 5.87 -105.04 -0.62 -0.88 16 6 C -0.21 -3.84 9.31 -37.13 -0.35 -4.18 16 7 C -0.02 -0.43 9.09 -37.37 -0.34 -0.77 16 8 C -0.25 -5.65 5.89 -104.76 -0.62 -6.27 16 9 C -0.05 -1.16 9.33 -39.54 -0.37 -1.53 16 10 C -0.18 -4.36 8.61 -39.30 -0.34 -4.70 16 11 C 0.14 3.42 5.57 -106.79 -0.59 2.82 16 12 C -0.43 -10.39 9.01 -37.98 -0.34 -10.73 16 13 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 14 C 0.07 1.63 5.12 -17.33 -0.09 1.54 16 15 N -0.76 -17.85 10.97 55.55 0.61 -17.24 16 16 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 17 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 C -0.27 -6.46 9.69 -39.25 -0.38 -6.84 16 21 C 0.15 3.47 7.23 -39.37 -0.28 3.19 16 22 F -0.16 -3.56 16.58 2.25 0.04 -3.53 16 23 C -0.13 -2.04 9.42 -39.08 -0.37 -2.41 16 24 C -0.11 -1.51 9.68 -39.65 -0.38 -1.89 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.12 2.06 6.04 -52.49 -0.32 1.74 16 31 H 0.10 1.95 5.73 -52.48 -0.30 1.65 16 32 H 0.10 2.08 6.13 -52.48 -0.32 1.76 16 33 H 0.12 3.00 6.17 -52.48 -0.32 2.67 16 34 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 35 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.12 1.81 6.17 -52.49 -0.32 1.48 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -25.36 320.65 -9.73 -35.09 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.09 Total: 8.66 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: -6.09 Total: -39.50 kcal Atomic # 7 Polarization: -17.85 SS G_CDS: 0.61 Total: -17.24 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.36 -9.73 -35.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206160197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.242 kcal (2) G-P(sol) polarization free energy of solvation -25.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds