Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38433 * 119.82038 * 2 1 4 4 C 1.37859 * 120.17690 * 180.02562 * 3 2 1 5 5 C 1.39923 * 119.81923 * 359.97438 * 4 3 2 6 6 C 1.47091 * 120.17803 * 179.97438 * 5 4 3 7 7 C 1.35055 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.46444 * 119.99935 * 180.28089 * 7 6 5 9 9 C 1.39848 * 120.65314 * 359.72319 * 8 7 6 10 10 C 1.37938 * 119.87079 * 180.02562 * 9 8 7 11 11 F 1.35096 * 119.36496 * 179.97438 * 10 9 8 12 12 C 1.39243 * 121.27409 * 359.97438 * 10 9 8 13 13 C 1.36140 * 121.38176 * 0.02562 * 12 10 9 14 14 C 1.40959 * 120.00551 * 359.70647 * 13 12 10 15 15 C 1.40501 * 120.61730 * 180.28454 * 14 13 12 16 16 H 1.08004 * 119.99909 * 205.37360 * 15 14 13 17 17 C 1.40089 * 120.00019 * 25.36838 * 15 14 13 18 18 N 1.30781 * 119.99719 * 15.02367 * 17 15 14 19 19 Si 1.86799 * 119.99900 * 195.02642 * 17 15 14 20 20 H 1.48500 * 109.47172 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47064 * 120.00345 * 19 17 15 22 22 H 1.48500 * 109.46716 * 239.99963 * 19 17 15 23 23 C 1.39922 * 119.64721 * 0.27938 * 5 4 3 24 24 C 1.37863 * 119.81716 * 359.48394 * 23 5 4 25 25 H 1.08999 * 109.46608 * 90.00211 * 1 2 3 26 26 H 1.08994 * 109.46963 * 210.00044 * 1 2 3 27 27 H 1.09001 * 109.47264 * 330.00073 * 1 2 3 28 28 H 1.07999 * 119.90575 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.08708 * 179.97438 * 4 3 2 30 30 H 1.08006 * 119.99333 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.99846 * 359.97438 * 7 6 5 32 32 H 1.07999 * 120.06607 * 0.02697 * 9 8 7 33 33 H 1.08008 * 119.30959 * 179.97438 * 12 10 9 34 34 H 1.07995 * 119.99676 * 179.97438 * 13 12 10 35 35 H 0.96998 * 120.00116 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.09379 * 179.70394 * 23 5 4 37 37 H 1.08002 * 119.91175 * 180.23331 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2010 0.0000 4 6 3.5740 1.2096 -0.0005 5 6 4.2774 0.0000 -0.0005 6 6 5.7483 -0.0001 -0.0017 7 6 6.4236 -1.1697 -0.0022 8 6 7.8880 -1.1697 0.0029 9 6 8.6010 0.0334 0.0025 10 6 9.9802 0.0145 0.0068 11 9 10.6587 1.1828 0.0059 12 6 10.6868 -1.1853 0.0121 13 6 10.0450 -2.3859 0.0127 14 6 8.6361 -2.4322 0.0142 15 6 7.9606 -3.6641 0.0209 16 1 6.9596 -3.7332 -0.3787 17 6 8.5855 -4.8028 0.5457 18 7 9.6561 -4.6783 1.2864 19 14 7.8895 -6.4988 0.1875 20 1 6.6824 -6.3681 -0.6675 21 1 8.9107 -7.3141 -0.5180 22 1 7.5218 -7.1626 1.4640 23 6 3.5740 -1.2096 -0.0059 24 6 2.1954 -1.2010 -0.0004 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6510 2.1337 -0.0004 29 1 4.1096 2.1474 -0.0010 30 1 6.2882 0.9353 -0.0021 31 1 5.8835 -2.1050 -0.0013 32 1 8.0728 0.9754 -0.0011 33 1 11.7666 -1.1630 0.0150 34 1 10.6153 -3.3030 0.0165 35 1 10.0886 -5.4666 1.6501 36 1 4.1096 -2.1474 -0.0108 37 1 1.6510 -2.1338 -0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206160780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -8.572123 kcal Electronic energy + Delta-G solvation = -20112.490294 eV Core-core repulsion = 16926.007233 eV Total energy + Delta-G solvation = -3186.483061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.53811 -38.98495 -37.51061 -34.44408 -33.81492 -31.67871 -30.64589 -29.72181 -28.73189 -26.21026 -24.93050 -22.82020 -22.19216 -21.22372 -20.39796 -18.51845 -17.64905 -16.58153 -15.73243 -15.51224 -14.92153 -14.83004 -14.42925 -14.29001 -14.07412 -13.66753 -13.32234 -13.01084 -12.94958 -12.74943 -12.20558 -12.11478 -12.02543 -11.91912 -11.53800 -11.38901 -11.21861 -10.97657 -10.77456 -10.68078 -10.46270 -9.90895 -9.69142 -9.64951 -9.44708 -8.66459 -8.23828 -7.59846 -7.22103 -6.81545 -4.61225 1.17169 1.72519 2.24921 2.55670 2.88037 2.93195 2.96810 3.52468 3.64088 4.22228 4.37333 5.02504 5.05257 5.24786 5.34606 5.39756 5.42730 5.60809 5.70089 5.73920 5.77912 5.85893 5.92168 6.05835 6.08905 6.32265 6.34480 6.49474 6.59680 6.71929 6.77428 6.85265 6.88366 6.95522 7.12615 7.24797 7.32992 7.44898 7.63839 7.67117 7.82463 7.90198 8.22399 8.43978 8.58951 9.73359 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.004934 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.282779 B = 5673.552133 C = 7834.364638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.130 4.130 5 C -0.013 4.013 6 C -0.223 4.223 7 C -0.006 4.006 8 C -0.196 4.196 9 C -0.085 4.085 10 C -0.054 4.054 11 F -0.175 7.175 12 C -0.113 4.113 13 C -0.146 4.146 14 C 0.125 3.875 15 C -0.424 4.424 16 H 0.090 0.910 17 C 0.071 3.929 18 N -0.769 5.769 19 Si 0.917 3.083 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.132 4.132 24 C -0.112 4.112 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.289 0.711 36 H 0.125 0.875 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 2.015 -1.531 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.133 4.133 4 C -0.148 4.148 5 C -0.013 4.013 6 C -0.241 4.241 7 C -0.024 4.024 8 C -0.198 4.198 9 C -0.104 4.104 10 C -0.074 4.074 11 F -0.154 7.154 12 C -0.133 4.133 13 C -0.165 4.165 14 C 0.121 3.879 15 C -0.451 4.451 16 H 0.108 0.892 17 C -0.151 4.151 18 N -0.391 5.391 19 Si 0.740 3.260 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.150 4.150 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.575 1.901 -1.375 9.858 hybrid contribution 0.060 -0.507 0.021 0.510 sum -9.515 1.395 -1.353 9.711 Atomic orbital electron populations 1.20710 0.91891 1.02146 1.01690 1.19826 0.95526 0.93305 1.03266 1.20833 0.94148 0.97014 1.01330 1.21222 0.93815 0.97395 1.02375 1.19116 0.93573 0.92578 0.95985 1.21657 0.90684 0.98223 1.13511 1.21943 0.92789 0.96885 0.90745 1.19477 0.91308 0.91810 1.17165 1.20745 0.91812 0.97509 1.00304 1.17096 0.89709 0.80451 1.20124 1.91289 1.80737 1.47505 1.95888 1.20455 0.98481 0.92081 1.02262 1.20969 0.94564 0.96238 1.04692 1.18767 0.91525 0.91116 0.86458 1.19699 1.01865 0.91990 1.31541 0.89239 1.26155 0.94152 1.02351 0.92458 1.69772 1.15774 1.33202 1.20355 0.86092 0.80385 0.79946 0.79600 1.17858 1.19223 1.19454 1.21403 0.93893 0.98001 1.01658 1.20874 0.94167 0.97086 1.00870 0.91813 0.92017 0.92095 0.86806 0.86430 0.87103 0.86786 0.87458 0.88152 0.85202 0.89944 0.85760 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.00 36.01 0.36 -0.71 16 2 C -0.12 -1.58 5.89 -104.48 -0.62 -2.19 16 3 C -0.12 -1.56 9.68 -39.65 -0.38 -1.94 16 4 C -0.13 -1.97 9.80 -39.09 -0.38 -2.36 16 5 C -0.01 -0.21 5.87 -105.05 -0.62 -0.83 16 6 C -0.22 -4.17 9.33 -37.12 -0.35 -4.52 16 7 C -0.01 -0.12 8.91 -37.41 -0.33 -0.45 16 8 C -0.20 -4.52 6.07 -102.55 -0.62 -5.15 16 9 C -0.08 -1.92 9.38 -39.09 -0.37 -2.29 16 10 C -0.05 -1.26 7.27 -39.32 -0.29 -1.55 16 11 F -0.17 -3.93 17.24 2.25 0.04 -3.89 16 12 C -0.11 -2.61 9.88 -39.96 -0.39 -3.00 16 13 C -0.15 -3.50 8.63 -39.31 -0.34 -3.84 16 14 C 0.12 3.04 5.74 -104.57 -0.60 2.44 16 15 C -0.42 -9.93 8.52 -38.04 -0.32 -10.26 16 16 H 0.09 1.98 6.65 -52.48 -0.35 1.63 16 17 C 0.07 1.56 5.20 -17.30 -0.09 1.47 16 18 N -0.77 -17.63 10.86 55.56 0.60 -17.03 16 19 Si 0.92 16.49 29.59 -169.99 -5.03 11.47 16 20 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 21 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 22 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 23 C -0.13 -2.13 9.41 -39.09 -0.37 -2.50 16 24 C -0.11 -1.59 9.68 -39.65 -0.38 -1.97 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 29 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.11 2.03 6.11 -52.48 -0.32 1.71 16 31 H 0.11 2.25 4.70 -52.49 -0.25 2.01 16 32 H 0.11 2.21 6.21 -52.49 -0.33 1.88 16 33 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.13 3.13 6.14 -52.49 -0.32 2.81 16 35 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 36 H 0.12 1.97 6.17 -52.49 -0.32 1.65 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -25.24 319.06 -9.65 -34.88 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.98 Total: 9.40 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: -6.09 Total: -39.63 kcal Atomic # 7 Polarization: -17.63 SS G_CDS: 0.60 Total: -17.03 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.24 -9.65 -34.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206160780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.312 kcal (2) G-P(sol) polarization free energy of solvation -25.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds