Wall clock time and date at job start Tue Mar 31 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38427 * 119.82237 * 2 1 4 4 C 1.37856 * 120.17858 * 179.97438 * 3 2 1 5 5 C 1.39930 * 119.81917 * 359.97438 * 4 3 2 6 6 C 1.47090 * 120.17426 * 179.97438 * 5 4 3 7 7 C 1.35061 * 119.99619 * 179.97438 * 6 5 4 8 8 C 1.46452 * 119.99889 * 179.97438 * 7 6 5 9 9 C 1.39846 * 120.59758 * 0.02831 * 8 7 6 10 10 C 1.37694 * 120.07965 * 179.97438 * 9 8 7 11 11 C 1.38863 * 121.38358 * 0.02562 * 10 9 8 12 12 C 1.37485 * 121.24129 * 359.72614 * 11 10 9 13 13 F 1.35103 * 120.10493 * 180.27270 * 12 11 10 14 14 C 1.41202 * 119.79654 * 0.52814 * 12 11 10 15 15 C 1.40480 * 120.65191 * 179.76529 * 14 12 11 16 16 H 1.08000 * 119.99934 * 146.00157 * 15 14 12 17 17 C 1.40109 * 120.00391 * 326.00088 * 15 14 12 18 18 N 1.30771 * 119.99627 * 332.28545 * 17 15 14 19 19 Si 1.86799 * 120.00464 * 152.27955 * 17 15 14 20 20 H 1.48501 * 109.47254 * 270.00594 * 19 17 15 21 21 H 1.48504 * 109.46871 * 30.00097 * 19 17 15 22 22 H 1.48498 * 109.47126 * 149.99785 * 19 17 15 23 23 C 1.39925 * 119.64587 * 0.27162 * 5 4 3 24 24 C 1.37861 * 119.81782 * 359.47259 * 23 5 4 25 25 H 1.09003 * 109.46584 * 89.99712 * 1 2 3 26 26 H 1.08996 * 109.47083 * 210.00184 * 1 2 3 27 27 H 1.08992 * 109.46894 * 329.99930 * 1 2 3 28 28 H 1.08000 * 119.90966 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.09523 * 179.97438 * 4 3 2 30 30 H 1.07993 * 120.00409 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00262 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.96037 * 359.95429 * 9 8 7 33 33 H 1.07998 * 119.30715 * 180.02562 * 10 9 8 34 34 H 1.08003 * 119.37620 * 180.02562 * 11 10 9 35 35 H 0.96993 * 120.00403 * 356.53802 * 18 17 15 36 36 H 1.07999 * 120.08775 * 179.70434 * 23 5 4 37 37 H 1.07995 * 119.91284 * 180.25500 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2010 0.0000 4 6 3.5740 1.2095 0.0005 5 6 4.2774 -0.0002 0.0016 6 6 5.7483 -0.0001 0.0016 7 6 6.4235 -1.1698 0.0032 8 6 7.8880 -1.1699 0.0026 9 6 8.5999 0.0339 0.0011 10 6 9.9768 0.0214 0.0011 11 6 10.6891 -1.1706 0.0021 12 6 10.0459 -2.3857 0.0088 13 9 10.7619 -3.5314 0.0152 14 6 8.6347 -2.4326 0.0034 15 6 7.9590 -3.6643 0.0051 16 1 7.0174 -3.7629 0.5248 17 6 8.5066 -4.7647 -0.6674 18 7 9.2888 -4.5777 -1.6986 19 14 8.1197 -6.4989 -0.0909 20 1 9.1293 -6.9241 0.9117 21 1 6.7687 -6.5258 0.5252 22 1 8.1532 -7.4252 -1.2510 23 6 3.5740 -1.2097 -0.0036 24 6 2.1954 -1.2011 0.0012 25 1 -0.3632 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6511 2.1337 -0.0004 29 1 4.1097 2.1473 0.0001 30 1 6.2883 0.9351 0.0012 31 1 5.8835 -2.1051 0.0040 32 1 8.0690 0.9744 -0.0005 33 1 10.5139 0.9583 0.0003 34 1 11.7688 -1.1426 0.0025 35 1 9.4497 -3.6801 -2.0289 36 1 4.1096 -2.1475 -0.0076 37 1 1.6510 -2.1338 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206177101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:06 Heat of formation + Delta-G solvation = -8.140595 kcal Electronic energy + Delta-G solvation = -20394.929534 eV Core-core repulsion = 17208.465185 eV Total energy + Delta-G solvation = -3186.464349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.36483 -39.02592 -37.50932 -34.35952 -34.09250 -31.67504 -30.67586 -29.68843 -28.52215 -26.13633 -24.96257 -22.81965 -22.21270 -21.24939 -20.57880 -18.53682 -18.15344 -16.37332 -15.80874 -15.11213 -14.99786 -14.93487 -14.38014 -14.13448 -14.12952 -13.69486 -13.49803 -13.17630 -12.90985 -12.74921 -12.31396 -12.11308 -12.02317 -11.81070 -11.50492 -11.25604 -11.03560 -10.91358 -10.78903 -10.57007 -10.42988 -10.21018 -9.71964 -9.63012 -9.07593 -8.70076 -8.26949 -7.69979 -7.51541 -6.88378 -4.67979 1.10911 1.68864 2.16537 2.56132 3.06029 3.15271 3.24636 3.38929 3.85209 4.22332 4.40411 4.98959 5.02166 5.12211 5.20733 5.33520 5.38713 5.58438 5.59398 5.70806 5.76787 5.82890 5.86971 5.96584 6.04387 6.23600 6.30572 6.32038 6.45199 6.69189 6.72351 6.78546 6.82393 7.02222 7.12174 7.27566 7.33717 7.39968 7.47251 7.62436 7.64119 7.77911 7.97271 8.37854 8.50831 9.74484 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.004566 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.221576 B = 6131.210868 C = 7626.049327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.129 4.129 5 C -0.015 4.015 6 C -0.219 4.219 7 C -0.008 4.008 8 C -0.190 4.190 9 C -0.058 4.058 10 C -0.239 4.239 11 C -0.103 4.103 12 C -0.019 4.019 13 F -0.148 7.148 14 C 0.083 3.917 15 C -0.486 4.486 16 H 0.090 0.910 17 C 0.035 3.965 18 N -0.752 5.752 19 Si 1.071 2.929 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.130 4.130 24 C -0.112 4.112 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.298 0.702 36 H 0.125 0.875 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 5.042 2.009 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.147 4.147 5 C -0.015 4.015 6 C -0.237 4.237 7 C -0.026 4.026 8 C -0.191 4.191 9 C -0.076 4.076 10 C -0.258 4.258 11 C -0.122 4.122 12 C -0.038 4.038 13 F -0.127 7.127 14 C 0.079 3.921 15 C -0.511 4.511 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.371 5.371 19 Si 0.894 3.106 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.148 4.148 24 C -0.130 4.130 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.516 3.403 1.638 10.238 hybrid contribution 0.070 1.611 0.255 1.633 sum -9.446 5.014 1.893 10.861 Atomic orbital electron populations 1.20715 0.91834 1.02175 1.01750 1.19840 0.95571 0.93288 1.03058 1.20834 0.94138 0.97037 1.01366 1.21213 0.93830 0.97326 1.02361 1.19108 0.93522 0.92616 0.96233 1.21650 0.90742 0.98086 1.13200 1.21961 0.92783 0.96992 0.90865 1.19502 0.91377 0.91607 1.16633 1.20870 0.93712 0.96166 0.96891 1.19949 0.93744 0.95760 1.16337 1.20591 0.98518 0.91928 1.01178 1.17722 0.89647 0.81129 1.15351 1.91384 1.77815 1.48774 1.94755 1.18719 0.89498 0.92925 0.91004 1.20557 1.07946 0.94211 1.28384 0.89161 1.27224 0.92167 1.06789 0.92925 1.70374 1.22443 1.29127 1.15198 0.83521 0.77491 0.72415 0.77210 1.19567 1.19813 1.19790 1.21417 0.93936 0.98018 1.01459 1.20886 0.94150 0.97139 1.00805 0.91758 0.91974 0.92070 0.86760 0.86428 0.87032 0.86866 0.87919 0.88250 0.87991 0.88896 0.85767 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.00 36.01 0.36 -0.70 16 2 C -0.12 -1.54 5.89 -104.48 -0.62 -2.16 16 3 C -0.12 -1.54 9.68 -39.65 -0.38 -1.92 16 4 C -0.13 -1.92 9.80 -39.09 -0.38 -2.30 16 5 C -0.01 -0.25 5.87 -105.04 -0.62 -0.87 16 6 C -0.22 -4.01 9.33 -37.12 -0.35 -4.36 16 7 C -0.01 -0.17 8.91 -37.41 -0.33 -0.50 16 8 C -0.19 -4.35 6.06 -102.57 -0.62 -4.97 16 9 C -0.06 -1.23 9.40 -39.18 -0.37 -1.60 16 10 C -0.24 -4.98 9.97 -39.55 -0.39 -5.37 16 11 C -0.10 -2.30 9.94 -39.62 -0.39 -2.69 16 12 C -0.02 -0.47 6.19 -38.73 -0.24 -0.71 16 13 F -0.15 -3.88 14.34 2.25 0.03 -3.85 16 14 C 0.08 2.08 5.23 -104.51 -0.55 1.53 16 15 C -0.49 -12.08 8.16 -38.04 -0.31 -12.39 16 16 H 0.09 2.14 7.09 -52.49 -0.37 1.77 16 17 C 0.04 0.86 4.26 -17.30 -0.07 0.79 16 18 N -0.75 -19.44 12.03 55.56 0.67 -18.77 16 19 Si 1.07 20.91 30.01 -169.99 -5.10 15.81 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.13 -2.12 9.42 -39.09 -0.37 -2.49 16 24 C -0.11 -1.58 9.68 -39.65 -0.38 -1.97 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.94 6.10 -52.49 -0.32 1.62 16 31 H 0.11 2.31 4.88 -52.49 -0.26 2.06 16 32 H 0.10 1.89 6.19 -52.49 -0.33 1.57 16 33 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 35 H 0.30 7.97 7.10 -40.82 -0.29 7.68 16 36 H 0.12 2.01 6.17 -52.49 -0.32 1.69 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -26.55 317.61 -9.69 -36.25 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.06 Total: 8.45 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: -6.02 Total: -42.67 kcal Atomic # 7 Polarization: -19.44 SS G_CDS: 0.67 Total: -18.77 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.55 -9.69 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206177101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.106 kcal (2) G-P(sol) polarization free energy of solvation -26.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds