Wall clock time and date at job start Tue Mar 31 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99768 * 2 1 4 4 H 1.48501 * 109.46894 * 239.99643 * 3 2 1 5 5 H 1.48500 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47542 * 119.99440 * 3 2 1 7 7 C 1.37873 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00204 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46963 * 299.99589 * 9 7 2 11 11 C 1.52997 * 109.47337 * 59.99898 * 9 7 2 12 12 Cl 1.80300 * 109.47276 * 185.00217 * 11 9 7 13 13 O 1.42904 * 109.47186 * 180.02562 * 9 7 2 14 14 C 1.42892 * 114.00212 * 150.00073 * 13 9 7 15 15 C 1.53007 * 109.47235 * 179.97438 * 14 13 9 16 16 C 1.52999 * 109.47237 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47070 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47022 * 179.97438 * 17 16 15 19 19 C 1.38234 * 119.99921 * 269.72769 * 18 17 16 20 20 C 1.38233 * 120.00119 * 179.76924 * 19 18 17 21 21 C 1.38236 * 119.99811 * 0.50625 * 20 19 18 22 22 C 1.38237 * 119.99898 * 359.74198 * 21 20 19 23 23 C 1.38230 * 120.00139 * 0.02562 * 22 21 20 24 24 H 0.96993 * 120.00193 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 64.99954 * 11 9 7 26 26 H 1.09001 * 109.46832 * 305.00144 * 11 9 7 27 27 H 1.09002 * 109.47195 * 299.99725 * 14 13 9 28 28 H 1.09003 * 109.47276 * 59.99645 * 14 13 9 29 29 H 1.08997 * 109.46915 * 299.99466 * 15 14 13 30 30 H 1.09003 * 109.46943 * 59.99851 * 15 14 13 31 31 H 1.09006 * 109.46895 * 299.99794 * 16 15 14 32 32 H 1.08995 * 109.47451 * 59.99490 * 16 15 14 33 33 H 1.08993 * 109.47185 * 299.99973 * 17 16 15 34 34 H 1.09003 * 109.46970 * 59.99976 * 17 16 15 35 35 H 1.08008 * 120.00041 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.00679 * 180.23064 * 20 19 18 37 37 H 1.08007 * 120.00225 * 179.72859 * 21 20 19 38 38 H 1.08001 * 120.00149 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00514 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 6 0.3720 -2.5805 -1.2490 12 17 -0.6385 -4.0720 -1.1768 13 8 2.1798 -3.5853 0.0017 14 6 1.6978 -4.7614 0.6546 15 6 2.7683 -5.8530 0.5949 16 6 2.2524 -7.1121 1.2944 17 6 3.3227 -8.2037 1.2342 18 6 2.8148 -9.4437 1.9238 19 6 3.0425 -9.6255 3.2751 20 6 2.5725 -10.7606 3.9087 21 6 1.8839 -11.7190 3.1888 22 6 1.6607 -11.5396 1.8364 23 6 2.1265 -10.4022 1.2038 24 1 -0.4850 0.8400 -0.0004 25 1 1.0040 -2.6124 -2.1365 26 1 -0.2755 -1.7049 -1.2953 27 1 1.4701 -4.5318 1.6955 28 1 0.7948 -5.1108 0.1538 29 1 2.9954 -6.0825 -0.4461 30 1 3.6715 -5.5038 1.0955 31 1 2.0256 -6.8822 2.3356 32 1 1.3491 -7.4614 0.7944 33 1 3.5492 -8.4335 0.1931 34 1 4.2263 -7.8547 1.7341 35 1 3.5847 -8.8790 3.8366 36 1 2.7471 -10.9009 4.9652 37 1 1.5205 -12.6080 3.6829 38 1 1.1231 -12.2886 1.2738 39 1 1.9525 -10.2623 0.1472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209832769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:03 Heat of formation + Delta-G solvation = -63.791974 kcal Electronic energy + Delta-G solvation = -18929.482486 eV Core-core repulsion = 15861.632368 eV Total energy + Delta-G solvation = -3067.850118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42834 -37.31180 -35.30148 -34.60411 -33.23897 -31.58341 -31.01631 -29.13825 -27.32821 -25.19876 -23.55742 -22.69836 -21.11098 -20.97419 -20.58462 -16.90962 -16.60327 -15.87412 -15.66108 -15.29895 -15.00325 -14.59437 -13.87297 -13.79945 -13.51010 -13.43733 -13.23846 -12.66261 -12.32453 -12.12239 -11.89592 -11.79327 -11.43181 -11.25278 -11.06163 -10.95908 -10.85365 -10.69742 -10.64039 -10.37273 -10.29944 -9.73890 -9.37491 -9.25895 -9.05574 -8.78445 -8.58192 -8.01086 -6.29961 -4.36166 1.23227 1.26634 3.20581 3.26013 3.28959 3.50252 3.65066 4.20644 4.57576 4.71112 4.82907 4.91788 5.00263 5.05992 5.10067 5.36414 5.38798 5.40451 5.57463 5.63570 5.89275 5.90417 5.94002 6.03887 6.09285 6.22553 6.32424 6.34752 6.37139 6.43551 6.47233 6.55134 6.62506 6.72450 6.88550 6.96770 7.34787 7.66252 7.98676 8.43317 8.83185 9.31760 10.77186 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.002958 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.276339 B = 9464.874913 C =10081.417621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.215 3.785 10 H 0.030 0.970 11 C -0.030 4.030 12 Cl -0.252 7.252 13 O -0.389 6.389 14 C 0.048 3.952 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.082 4.082 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.118 4.118 24 H 0.269 0.731 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 -17.802 3.720 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.158 3.842 10 H 0.048 0.952 11 C -0.092 4.092 12 Cl -0.227 7.227 13 O -0.309 6.309 14 C -0.029 4.029 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.119 4.119 18 C -0.075 4.075 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.136 4.136 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.288 -17.752 3.637 18.417 hybrid contribution -0.030 0.780 0.105 0.787 sum 3.257 -16.973 3.743 17.683 Atomic orbital electron populations 1.69806 1.05963 1.27763 1.49508 1.25009 0.95134 0.99754 0.94379 0.86310 0.79328 0.81435 0.79018 1.19881 1.21012 1.19868 1.21071 0.94163 0.88526 1.51496 0.90969 1.19952 0.87419 0.84674 0.92181 0.95223 1.25890 0.95154 0.85403 1.02781 1.98596 1.76054 1.49022 1.98981 1.87818 1.43456 1.21879 1.77772 1.22689 0.97104 0.86916 0.96162 1.21492 0.99062 0.93703 1.01016 1.21464 0.98017 0.93984 1.01174 1.20656 0.98698 0.92060 1.00486 1.20019 0.97513 0.95959 0.94035 1.21104 1.00491 0.97768 0.94305 1.21143 0.98448 0.94425 0.99759 1.21120 0.99862 0.99354 0.94523 1.21143 0.99966 0.97744 0.94914 1.21103 0.98459 0.94023 1.00060 0.92061 0.91086 0.85535 0.94981 0.92041 0.91629 0.91753 0.91853 0.91789 0.90860 0.90867 0.86040 0.86250 0.86389 0.86254 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 11.29 55.43 0.63 -23.52 16 2 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 3 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.51 -13.96 8.89 -34.44 -0.31 -14.26 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.21 5.45 2.38 -27.89 -0.07 5.38 16 10 H 0.03 0.81 7.79 -51.93 -0.40 0.41 16 11 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 12 Cl -0.25 -5.29 26.09 -51.86 -1.35 -6.64 16 13 O -0.39 -9.20 9.95 -35.23 -0.35 -9.55 16 14 C 0.05 0.94 5.54 37.16 0.21 1.15 16 15 C -0.12 -1.78 5.58 -26.73 -0.15 -1.93 16 16 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 17 C -0.08 -0.89 5.35 -27.88 -0.15 -1.03 16 18 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 19 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 21 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.24 9.70 -39.59 -0.38 -1.62 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 26 H 0.13 3.22 5.95 -51.93 -0.31 2.91 16 27 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.06 1.20 5.09 -51.93 -0.26 0.94 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -27.76 337.47 -9.99 -37.75 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.01 Total: 1.89 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.97 Total: -20.49 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.63 Total: -23.52 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.35 Total: -9.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -5.29 SS G_CDS: -1.35 Total: -6.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.76 -9.99 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209832769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.044 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds