Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86806 * 119.99399 * 2 1 4 4 H 1.48507 * 109.46969 * 269.99901 * 3 2 1 5 5 H 1.48498 * 109.47281 * 29.99705 * 3 2 1 6 6 H 1.48497 * 109.46835 * 150.00115 * 3 2 1 7 7 C 1.39918 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99818 * 184.71949 * 7 2 1 9 9 C 1.41294 * 120.00126 * 4.44074 * 7 2 1 10 10 C 1.40641 * 120.22992 * 324.96286 * 9 7 2 11 11 C 1.38136 * 119.71016 * 179.76381 * 10 9 7 12 12 N 1.40013 * 119.91245 * 180.25049 * 11 10 9 13 13 C 1.34774 * 119.99543 * 35.48595 * 12 11 10 14 14 O 1.21291 * 120.00598 * 355.68427 * 13 12 11 15 15 C 1.50702 * 119.99667 * 175.68609 * 13 12 11 16 16 C 1.53004 * 109.47084 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47219 * 55.00010 * 16 15 13 18 18 O 1.42899 * 109.46959 * 294.99848 * 16 15 13 19 19 C 1.53003 * 109.46938 * 174.99553 * 16 15 13 20 20 N 1.46902 * 109.46957 * 184.99672 * 19 16 15 21 21 C 1.39370 * 120.17658 * 0.53804 * 11 10 9 22 22 C 1.38360 * 120.46902 * 359.69170 * 21 11 10 23 23 C 1.38002 * 120.28923 * 0.04675 * 22 21 11 24 24 F 1.35106 * 120.09275 * 179.97438 * 23 22 21 25 25 H 0.96998 * 120.00595 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.14250 * 0.02562 * 10 9 7 27 27 H 0.96994 * 119.99726 * 215.48543 * 12 11 10 28 28 H 1.09000 * 109.47119 * 299.99646 * 15 13 12 29 29 H 1.08998 * 109.47553 * 59.99750 * 15 13 12 30 30 H 0.96700 * 113.99881 * 300.00089 * 18 16 15 31 31 H 1.08998 * 109.47192 * 304.99971 * 19 16 15 32 32 H 1.09004 * 109.46653 * 64.99887 * 19 16 15 33 33 H 1.00893 * 110.99989 * 180.02562 * 20 19 16 34 34 H 1.00900 * 111.00317 * 303.95975 * 20 19 16 35 35 H 1.08002 * 119.76134 * 179.71624 * 21 11 10 36 36 H 1.08006 * 119.85596 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 2.4899 2.0466 -1.4002 5 1 1.4397 2.6528 0.7000 6 1 3.5399 1.4404 0.7000 7 6 2.0082 -1.2117 0.0005 8 1 3.0855 -1.2131 0.0775 9 6 1.3050 -2.4336 -0.0937 10 6 0.0455 -2.5745 0.5159 11 6 -0.6348 -3.7723 0.4129 12 7 -1.8914 -3.9156 1.0137 13 6 -2.7436 -2.8722 1.0503 14 8 -2.3936 -1.7882 0.6335 15 6 -4.1316 -3.0522 1.6090 16 6 -4.8878 -1.7243 1.5339 17 1 -4.8767 -1.3573 0.5076 18 8 -4.2574 -0.7681 2.3885 19 6 -6.3347 -1.9352 1.9844 20 7 -7.0917 -0.6899 1.7994 21 6 -0.0711 -4.8406 -0.2823 22 6 1.1697 -4.7117 -0.8808 23 6 1.8638 -3.5220 -0.7945 24 9 3.0754 -3.4006 -1.3800 25 1 -0.4851 0.8400 0.0004 26 1 -0.3899 -1.7484 1.0587 27 1 -2.1484 -4.7657 1.4036 28 1 -4.6625 -3.8056 1.0272 29 1 -4.0660 -3.3752 2.6480 30 1 -4.2312 -1.0294 3.3192 31 1 -6.7885 -2.7280 1.3897 32 1 -6.3500 -2.2167 3.0374 33 1 -8.0511 -0.8033 2.0903 34 1 -6.6536 0.0757 2.2893 35 1 -0.6068 -5.7756 -0.3548 36 1 1.5971 -5.5458 -1.4175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219518555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -111.818068 kcal Electronic energy + Delta-G solvation = -22062.955493 eV Core-core repulsion = 18461.146088 eV Total energy + Delta-G solvation = -3601.809405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.13520 -39.67568 -37.86623 -36.63781 -34.15030 -33.80344 -33.04186 -31.09483 -29.65301 -27.95653 -25.59762 -25.20725 -22.05043 -21.44153 -20.73103 -19.48019 -17.74624 -16.82487 -16.33433 -16.04626 -15.98380 -15.88737 -15.43834 -14.94185 -14.55542 -14.14179 -13.93640 -13.76386 -13.26133 -13.12074 -12.75290 -12.58275 -12.32356 -11.91178 -11.71076 -11.56904 -11.40179 -11.04297 -10.90399 -10.86803 -10.54148 -10.22053 -10.06425 -9.62297 -9.16067 -8.98496 -8.88962 -8.74442 -7.38062 -6.83919 -6.42352 -4.33269 2.57707 2.85224 3.16468 3.19685 3.22022 3.41272 3.67075 4.06121 4.32148 4.49929 4.72308 4.82286 4.94024 5.02388 5.25758 5.39739 5.46805 5.53962 5.63435 5.92958 6.15059 6.15712 6.42409 6.84199 6.90809 6.99108 7.05160 7.24383 7.32197 7.49348 7.61731 7.76653 7.79219 8.09983 8.20956 8.39069 8.59690 8.92142 8.93089 9.00027 10.37882 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.005602 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.272760 B = 4996.629918 C = 6605.529626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.091 3.909 10 C -0.132 4.132 11 C 0.131 3.869 12 N -0.676 5.676 13 C 0.487 3.513 14 O -0.460 6.460 15 C -0.172 4.172 16 C 0.124 3.876 17 H 0.114 0.886 18 O -0.538 6.538 19 C 0.031 3.969 20 N -0.847 5.847 21 C -0.238 4.238 22 C -0.116 4.116 23 C -0.035 4.035 24 F -0.164 7.164 25 H 0.283 0.717 26 H 0.159 0.841 27 H 0.394 0.606 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.361 0.639 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.338 0.662 34 H 0.349 0.651 35 H 0.097 0.903 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -5.264 6.871 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.153 4.153 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.087 3.913 10 C -0.153 4.153 11 C 0.039 3.961 12 N -0.322 5.322 13 C 0.271 3.729 14 O -0.329 6.329 15 C -0.213 4.213 16 C 0.064 3.936 17 H 0.132 0.868 18 O -0.341 6.341 19 C -0.100 4.100 20 N -0.377 5.377 21 C -0.259 4.259 22 C -0.135 4.135 23 C -0.055 4.055 24 F -0.143 7.143 25 H 0.094 0.906 26 H 0.177 0.823 27 H 0.227 0.773 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.206 0.794 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.115 0.885 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.946 -4.006 5.200 13.631 hybrid contribution 0.097 -0.377 1.517 1.566 sum -11.849 -4.383 6.717 14.308 Atomic orbital electron populations 1.69835 1.06447 1.29213 1.33329 1.25949 0.95120 1.01035 0.93207 0.86227 0.80109 0.80697 0.79149 1.19527 1.20235 1.18741 1.19397 0.94865 0.89825 1.44715 0.90319 1.17573 0.92628 0.91373 0.89750 1.21713 0.95030 0.96472 1.02108 1.17684 0.84523 0.96184 0.97729 1.43404 1.15416 1.14190 1.59184 1.20443 0.86372 0.85171 0.80889 1.91001 1.75935 1.23562 1.42449 1.22401 0.95401 1.00592 1.02924 1.21719 0.87755 0.87315 0.96823 0.86775 1.86835 1.81236 1.45451 1.20569 1.22529 0.95586 0.93187 0.98744 1.58573 1.05800 1.06518 1.66853 1.19888 0.98274 0.98357 1.09401 1.20237 0.95574 0.95718 1.02001 1.18037 0.84522 0.97396 1.05576 1.91265 1.43091 1.96828 1.83153 0.90597 0.82342 0.77331 0.88528 0.89285 0.79352 0.90281 0.95494 0.84970 0.83751 0.88479 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.17 10.55 55.55 0.59 -20.58 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 20.14 29.56 -169.99 -5.03 15.11 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.92 8.69 -37.79 -0.33 -13.25 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.76 16 9 C 0.09 2.54 5.55 -106.78 -0.59 1.95 16 10 C -0.13 -3.51 7.30 -38.71 -0.28 -3.79 16 11 C 0.13 2.98 6.29 -83.74 -0.53 2.45 16 12 N -0.68 -11.94 5.34 -9.89 -0.05 -11.99 16 13 C 0.49 8.73 7.55 -10.99 -0.08 8.65 16 14 O -0.46 -10.78 12.81 -8.88 -0.11 -10.90 16 15 C -0.17 -1.98 5.38 -27.88 -0.15 -2.13 16 16 C 0.12 1.56 2.75 -26.73 -0.07 1.49 16 17 H 0.11 1.82 7.96 -51.93 -0.41 1.41 16 18 O -0.54 -7.73 12.09 -49.66 -0.60 -8.33 16 19 C 0.03 0.28 6.46 -3.82 -0.02 0.26 16 20 N -0.85 -8.20 9.62 -10.37 -0.10 -8.30 16 21 C -0.24 -5.10 9.97 -39.12 -0.39 -5.49 16 22 C -0.12 -2.65 10.00 -39.62 -0.40 -3.05 16 23 C -0.03 -0.92 7.31 -38.62 -0.28 -1.20 16 24 F -0.16 -4.29 16.82 2.25 0.04 -4.25 16 25 H 0.28 7.40 8.30 -40.82 -0.34 7.07 16 26 H 0.16 4.51 4.35 -52.48 -0.23 4.28 16 27 H 0.39 5.19 8.82 -40.82 -0.36 4.83 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.36 3.65 9.05 45.56 0.41 4.06 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.34 2.46 9.08 -39.30 -0.36 2.11 16 34 H 0.35 3.44 8.55 -39.29 -0.34 3.11 16 35 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -33.78 313.38 -7.13 -40.91 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -3.36 Total: 16.05 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.22 Total: -12.44 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.43 Total: -40.87 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.71 Total: -19.23 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.78 -7.13 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.903 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds