Wall clock time and date at job start Tue Mar 31 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47076 * 2 1 4 4 C 1.34231 * 117.00284 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99701 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00366 * 179.97438 * 4 3 2 7 7 C 1.52993 * 109.47384 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47242 * 54.43356 * 7 6 4 9 9 C 1.50705 * 109.47195 * 174.43760 * 7 6 4 10 10 H 1.08000 * 119.99259 * 245.36953 * 9 7 6 11 11 C 1.37869 * 120.00117 * 65.37163 * 9 7 6 12 12 N 1.31517 * 120.00206 * 355.12875 * 11 9 7 13 13 Si 1.86803 * 119.99796 * 175.12877 * 11 9 7 14 14 H 1.48497 * 109.47204 * 94.99961 * 13 11 9 15 15 H 1.48507 * 109.47019 * 214.99684 * 13 11 9 16 16 H 1.48502 * 109.47264 * 334.99816 * 13 11 9 17 17 O 1.42904 * 109.46750 * 294.43134 * 7 6 4 18 18 C 1.35962 * 116.99711 * 155.28524 * 17 7 6 19 19 C 1.38663 * 120.06193 * 5.50808 * 18 17 7 20 20 C 1.38183 * 119.96554 * 179.71915 * 19 18 17 21 21 C 1.38262 * 120.09562 * 0.55369 * 20 19 18 22 22 C 1.38247 * 120.12662 * 359.71921 * 21 20 19 23 23 C 1.38337 * 120.03169 * 0.02562 * 22 21 20 24 24 F 1.35103 * 120.05036 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47456 * 60.00164 * 1 2 3 26 26 H 1.09004 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47173 * 300.00008 * 1 2 3 28 28 H 1.09005 * 109.47019 * 240.00291 * 2 1 3 29 29 H 1.09002 * 109.47456 * 119.99835 * 2 1 3 30 30 H 1.09001 * 109.47506 * 300.00352 * 6 4 3 31 31 H 1.09001 * 109.46954 * 60.00025 * 6 4 3 32 32 H 0.97000 * 119.99526 * 179.97438 * 12 11 9 33 33 H 1.07997 * 120.01667 * 359.96667 * 19 18 17 34 34 H 1.07999 * 119.95180 * 180.27075 * 20 19 18 35 35 H 1.08005 * 119.93481 * 179.74345 * 21 20 19 36 36 H 1.08001 * 119.98687 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4485 2.8574 0.0001 8 1 5.7802 2.2412 -0.8355 9 6 6.0242 4.2433 -0.1381 10 1 6.5864 4.5088 -1.0212 11 6 5.8331 5.1722 0.8626 12 7 5.0691 4.8811 1.8928 13 14 6.6593 6.8441 0.7552 14 1 5.7189 7.8232 0.1534 15 1 7.0401 7.2965 2.1175 16 1 7.8757 6.7418 -0.0905 17 8 5.8949 2.2765 1.2271 18 6 7.1077 1.6621 1.2138 19 6 7.9021 1.7176 0.0786 20 6 9.1368 1.0973 0.0693 21 6 9.5767 0.4116 1.1865 22 6 8.7855 0.3491 2.3184 23 6 7.5507 0.9726 2.3353 24 9 6.7774 0.9121 3.4415 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.5851 3.4691 -0.8904 31 1 3.5843 3.4701 0.8895 32 1 4.9351 5.5346 2.5971 33 1 7.5576 2.2486 -0.7964 34 1 9.7572 1.1444 -0.8134 35 1 10.5405 -0.0757 1.1749 36 1 9.1311 -0.1875 3.1896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225201655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:15 Heat of formation + Delta-G solvation = -150.584213 kcal Electronic energy + Delta-G solvation = -22542.335068 eV Core-core repulsion = 18906.551887 eV Total energy + Delta-G solvation = -3635.783182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.91536 -39.84898 -38.85307 -36.73204 -35.81151 -33.20599 -31.60842 -30.53364 -29.94392 -28.61099 -26.36793 -23.42444 -22.70733 -21.68129 -21.24903 -19.76637 -17.81684 -17.19324 -16.58028 -16.18061 -15.85764 -15.55098 -15.47413 -14.89221 -14.70564 -14.28809 -13.77652 -13.58744 -13.36076 -13.23456 -12.68419 -12.47090 -12.19419 -12.00335 -11.79154 -11.48729 -11.29675 -11.11618 -11.04477 -11.02961 -10.91836 -10.61340 -10.38522 -10.14515 -9.74163 -9.44686 -9.26389 -8.75450 -8.21652 -7.13994 -6.26008 -4.46543 1.84125 2.11457 2.99547 3.16681 3.26435 3.28576 3.32393 4.22315 4.37042 4.38234 5.03561 5.08782 5.13147 5.16009 5.37929 5.38280 5.47328 5.55750 5.80728 5.89536 5.90537 5.97801 6.07098 6.21440 6.29363 6.40022 6.59605 6.73409 6.80083 6.94526 7.01408 7.07521 7.27325 7.48552 7.63658 7.82480 8.42527 8.50919 8.80346 9.31226 10.75902 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.007676 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.054966 B = 3646.760847 C = 5311.251679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.099 4.099 7 C 0.224 3.776 8 H 0.034 0.966 9 C -0.567 4.567 10 H 0.070 0.930 11 C 0.087 3.913 12 N -0.853 5.853 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.277 6.277 18 C 0.157 3.843 19 C -0.181 4.181 20 C -0.095 4.095 21 C -0.164 4.164 22 C -0.124 4.124 23 C 0.037 3.963 24 F -0.141 7.141 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.268 0.732 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -6.595 -3.185 7.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.402 6.402 6 C -0.137 4.137 7 C 0.169 3.831 8 H 0.052 0.948 9 C -0.604 4.604 10 H 0.088 0.912 11 C -0.122 4.122 12 N -0.487 5.487 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.188 6.188 18 C 0.107 3.893 19 C -0.200 4.200 20 C -0.114 4.114 21 C -0.183 4.183 22 C -0.143 4.143 23 C 0.018 3.982 24 F -0.120 7.120 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.452 -6.809 -2.810 7.508 hybrid contribution 0.366 0.800 0.119 0.888 sum -1.086 -6.009 -2.690 6.673 Atomic orbital electron populations 1.21777 0.93275 1.02337 1.03322 1.22863 0.94865 0.81752 1.02068 1.86572 1.26101 1.31039 1.84717 1.24893 0.79540 0.94298 0.71211 1.90597 1.60219 1.43620 1.45761 1.21847 0.96596 0.88196 1.07057 1.19837 0.88713 0.92858 0.81661 0.94783 1.21383 1.37224 0.95696 1.06066 0.91196 1.25041 0.93712 0.98712 0.94689 1.69891 1.34500 1.35122 1.09167 0.86529 0.80088 0.83343 0.77872 1.20296 1.20821 1.19457 1.86299 1.28468 1.65441 1.38574 1.19064 0.87920 0.90086 0.92274 1.21295 0.95490 1.04208 0.99007 1.20906 0.95598 0.96896 0.97960 1.20590 1.00196 1.03982 0.93518 1.20766 0.92810 1.01048 0.99645 1.17094 0.91870 1.05607 0.83666 1.91432 1.74677 1.95228 1.50690 0.91722 0.90828 0.91581 0.91874 0.91702 0.87734 0.84592 0.92171 0.84139 0.86336 0.86278 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 37.16 0.38 -1.27 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.81 10.22 -39.26 -0.40 -7.21 16 4 C 0.46 9.76 7.84 36.00 0.28 10.04 16 5 O -0.51 -12.10 15.18 -23.91 -0.36 -12.46 16 6 C -0.10 -2.21 5.27 -27.89 -0.15 -2.35 16 7 C 0.22 5.41 1.34 -27.88 -0.04 5.37 16 8 H 0.03 0.80 6.12 -51.93 -0.32 0.49 16 9 C -0.57 -14.26 7.95 -34.44 -0.27 -14.53 16 10 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 11 C 0.09 2.23 5.26 -17.82 -0.09 2.13 16 12 N -0.85 -22.82 11.04 55.43 0.61 -22.21 16 13 Si 0.90 19.98 29.54 -169.99 -5.02 14.95 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 17 O -0.28 -7.23 8.14 -33.46 -0.27 -7.50 16 18 C 0.16 3.73 6.60 -39.18 -0.26 3.47 16 19 C -0.18 -3.79 8.70 -39.44 -0.34 -4.13 16 20 C -0.10 -1.65 10.04 -39.59 -0.40 -2.05 16 21 C -0.16 -2.68 10.04 -39.57 -0.40 -3.08 16 22 C -0.12 -2.24 10.02 -39.54 -0.40 -2.63 16 23 C 0.04 0.84 7.31 -39.30 -0.29 0.55 16 24 F -0.14 -3.33 17.11 2.25 0.04 -3.29 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 30 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 31 H 0.14 3.30 6.47 -51.93 -0.34 2.97 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.14 2.93 5.68 -52.49 -0.30 2.63 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -29.70 316.83 -6.67 -36.37 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.30 Total: 3.96 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.74 Total: -7.37 kcal Atomic # 7 Polarization: -22.82 SS G_CDS: 0.61 Total: -22.21 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.04 Total: -27.18 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.70 -6.67 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225201655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.211 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds