Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38170 * 119.97411 * 2 1 4 4 C 1.38704 * 119.94930 * 179.97438 * 3 2 1 5 5 O 1.35895 * 120.05890 * 179.97438 * 4 3 2 6 6 C 1.42900 * 117.00386 * 176.09082 * 5 4 3 7 7 H 1.09007 * 109.46964 * 26.92354 * 6 5 4 8 8 C 1.50700 * 109.47356 * 146.92346 * 6 5 4 9 9 H 1.08000 * 120.00141 * 0.02562 * 8 6 5 10 10 C 1.37883 * 120.00191 * 180.02562 * 8 6 5 11 11 N 1.31516 * 119.99508 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00202 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47085 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47213 * 119.99519 * 12 10 8 15 15 H 1.48494 * 109.46955 * 239.99897 * 12 10 8 16 16 C 1.52995 * 109.47278 * 266.92928 * 6 5 4 17 17 Cl 1.80293 * 109.47370 * 64.99593 * 16 6 5 18 18 C 1.38758 * 119.88748 * 359.97438 * 4 3 2 19 19 C 1.38123 * 119.94204 * 359.97438 * 18 4 3 20 20 C 1.38241 * 119.97630 * 179.97438 * 2 1 3 21 21 C 1.50700 * 119.94029 * 0.02562 * 20 2 1 22 22 C 1.52998 * 109.46971 * 115.79093 * 21 20 2 23 23 C 1.53004 * 109.47290 * 235.79033 * 21 20 2 24 24 H 1.09000 * 109.47291 * 95.80291 * 1 2 3 25 25 H 1.09003 * 109.46974 * 215.80726 * 1 2 3 26 26 H 1.08995 * 109.47540 * 335.79885 * 1 2 3 27 27 H 1.08006 * 120.02231 * 359.95317 * 3 2 1 28 28 H 0.96998 * 119.99600 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.47229 * 185.00050 * 16 6 5 30 30 H 1.09010 * 109.46928 * 304.99766 * 16 6 5 31 31 H 1.07993 * 120.02802 * 179.72664 * 18 4 3 32 32 H 1.08000 * 119.97060 * 179.97438 * 19 18 4 33 33 H 1.08998 * 109.47385 * 355.79162 * 21 20 2 34 34 H 1.09005 * 109.47609 * 60.00049 * 22 21 20 35 35 H 1.09008 * 109.47216 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.47519 * 299.99803 * 22 21 20 37 37 H 1.08997 * 109.47218 * 59.99579 * 23 21 20 38 38 H 1.09000 * 109.47356 * 180.02562 * 23 21 20 39 39 H 1.09005 * 109.46884 * 299.99702 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 0.0005 5 8 4.2655 2.3722 0.0000 6 6 5.6898 2.2970 0.0874 7 1 6.0295 1.3471 -0.3257 8 6 6.3017 3.4316 -0.6930 9 1 5.6664 4.1397 -1.2043 10 6 7.6726 3.5659 -0.7544 11 7 8.4461 2.7039 -0.1314 12 14 8.4310 4.9728 -1.7212 13 1 7.3528 5.7967 -2.3244 14 1 9.2478 5.8151 -0.8111 15 1 9.2951 4.4247 -2.7973 16 6 6.1169 2.3974 1.5531 17 17 5.5070 0.9613 2.4566 18 6 4.2752 -0.0070 0.0016 19 6 3.5805 -1.2009 0.0027 20 6 2.1976 -1.1975 0.0005 21 6 1.4422 -2.5015 0.0005 22 6 1.7302 -3.2576 -1.2980 23 6 1.8879 -3.3491 1.1938 24 1 -0.3634 -0.1039 -1.0224 25 1 -0.3633 -0.8335 0.6013 26 1 -0.3634 0.9373 0.4213 27 1 1.6571 2.1322 -0.0008 28 1 9.4106 2.7981 -0.1748 29 1 7.2048 2.4294 1.6132 30 1 5.7019 3.3053 1.9911 31 1 5.3551 -0.0102 -0.0024 32 1 4.1178 -2.1377 0.0031 33 1 0.3733 -2.3022 0.0755 34 1 2.7992 -3.4571 -1.3730 35 1 1.1841 -4.2011 -1.2978 36 1 1.4127 -2.6539 -2.1482 37 1 1.6828 -2.8104 2.1189 38 1 1.3418 -4.2925 1.1936 39 1 2.9569 -3.5485 1.1188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228199838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = -47.766915 kcal Electronic energy + Delta-G solvation = -20245.280024 eV Core-core repulsion = 17178.124804 eV Total energy + Delta-G solvation = -3067.155219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70034 -37.75350 -34.96074 -34.43987 -33.34105 -32.12678 -29.87218 -28.15806 -27.03828 -26.48084 -25.32809 -22.91950 -22.18770 -20.31232 -19.17939 -17.36829 -16.70150 -15.74593 -14.99041 -14.79321 -14.41861 -14.02422 -13.85491 -13.59118 -13.38874 -13.06159 -12.82471 -12.51911 -12.30642 -12.17485 -12.05904 -11.99988 -11.68348 -11.40024 -11.18198 -11.06181 -10.98880 -10.81733 -10.53086 -10.37561 -10.31892 -10.07683 -9.57293 -9.36437 -9.06561 -8.66320 -8.18455 -7.17586 -6.43717 -4.50877 1.93233 2.07437 3.11218 3.20556 3.26031 3.42387 4.05572 4.31469 4.47279 4.91781 4.92917 5.01420 5.32630 5.34440 5.44098 5.55855 5.65116 5.68651 5.80250 5.83417 5.92276 5.92969 6.00791 6.08141 6.12291 6.19774 6.25240 6.33113 6.34364 6.47580 6.65245 6.73960 6.99641 7.06036 7.15248 7.22859 7.44868 7.56964 7.77921 8.38302 8.70832 9.17099 10.63535 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.004730 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.841840 B = 5918.196374 C = 6193.620005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.056 4.056 3 C -0.168 4.168 4 C 0.158 3.842 5 O -0.313 6.313 6 C 0.205 3.795 7 H 0.052 0.948 8 C -0.520 4.520 9 H 0.076 0.924 10 C 0.063 3.937 11 N -0.889 5.889 12 Si 0.915 3.085 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.035 4.035 17 Cl -0.239 7.239 18 C -0.193 4.193 19 C -0.075 4.075 20 C -0.135 4.135 21 C -0.052 4.052 22 C -0.141 4.141 23 C -0.143 4.143 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.271 0.729 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -7.926 0.845 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.056 4.056 3 C -0.187 4.187 4 C 0.111 3.889 5 O -0.226 6.226 6 C 0.150 3.850 7 H 0.069 0.931 8 C -0.558 4.558 9 H 0.094 0.906 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.742 3.258 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.098 4.098 17 Cl -0.214 7.214 18 C -0.211 4.211 19 C -0.094 4.094 20 C -0.136 4.136 21 C -0.070 4.070 22 C -0.199 4.199 23 C -0.201 4.201 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.351 -7.855 0.937 13.028 hybrid contribution 0.850 0.555 -0.275 1.052 sum -9.501 -7.300 0.662 12.000 Atomic orbital electron populations 1.20770 0.91902 1.02205 1.01799 1.19312 0.95045 0.91948 0.99308 1.20159 0.91345 0.97775 1.09448 1.19073 0.91568 0.85963 0.92307 1.86117 1.23351 1.26924 1.86211 1.20514 0.73398 1.00100 0.90998 0.93097 1.21077 0.91470 1.11995 1.31277 0.90554 1.24983 0.96585 0.96936 0.95475 1.69810 1.05242 1.35541 1.42071 0.86135 0.79118 0.81068 0.79486 1.19272 1.20517 1.20505 1.25742 1.04807 0.85581 0.93671 1.98644 1.90830 1.51591 1.80311 1.21443 1.01185 0.92022 1.06476 1.20600 0.93197 0.97072 0.98482 1.19321 0.93435 0.93543 1.07261 1.20046 0.99374 0.92450 0.95146 1.21837 1.01707 0.99225 0.97112 1.21859 1.01428 0.98837 0.97927 0.91603 0.91555 0.91932 0.86205 0.91889 0.84961 0.90841 0.84756 0.86951 0.90551 0.92623 0.93085 0.92735 0.92730 0.93088 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.26 36.00 0.33 -0.98 16 2 C -0.06 -0.88 5.88 -104.65 -0.62 -1.50 16 3 C -0.17 -3.09 9.62 -39.43 -0.38 -3.47 16 4 C 0.16 3.32 5.95 -39.22 -0.23 3.08 16 5 O -0.31 -7.41 9.73 -19.41 -0.19 -7.59 16 6 C 0.20 5.03 2.19 -27.89 -0.06 4.97 16 7 H 0.05 1.32 5.37 -51.93 -0.28 1.04 16 8 C -0.52 -13.66 8.89 -34.44 -0.31 -13.96 16 9 H 0.08 2.03 7.81 -52.49 -0.41 1.62 16 10 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 11 N -0.89 -23.18 11.29 55.43 0.63 -22.55 16 12 Si 0.92 19.94 29.54 -169.99 -5.02 14.92 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 C -0.04 -0.82 6.17 37.16 0.23 -0.59 16 17 Cl -0.24 -5.04 25.67 -51.86 -1.33 -6.37 16 18 C -0.19 -3.85 7.07 -39.43 -0.28 -4.13 16 19 C -0.08 -1.29 8.73 -39.61 -0.35 -1.63 16 20 C -0.14 -2.08 4.79 -104.60 -0.50 -2.58 16 21 C -0.05 -0.63 2.90 -91.77 -0.27 -0.90 16 22 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 23 C -0.14 -1.62 8.96 37.16 0.33 -1.29 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 26 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.13 3.26 5.95 -51.93 -0.31 2.95 16 30 H 0.07 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.13 2.89 5.15 -52.49 -0.27 2.62 16 32 H 0.11 1.72 7.09 -52.49 -0.37 1.35 16 33 H 0.08 0.84 5.54 -51.93 -0.29 0.56 16 34 H 0.05 0.64 7.64 -51.93 -0.40 0.24 16 35 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.66 7.16 -51.93 -0.37 0.29 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -26.32 323.62 -8.43 -34.75 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.54 Total: 4.66 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.85 Total: -22.69 kcal Atomic # 7 Polarization: -23.18 SS G_CDS: 0.63 Total: -22.55 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.19 Total: -7.59 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -5.04 SS G_CDS: -1.33 Total: -6.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.32 -8.43 -34.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228199838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.018 kcal (2) G-P(sol) polarization free energy of solvation -26.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds