Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38175 * 120.02305 * 2 1 4 4 C 1.38243 * 120.05432 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.94322 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47141 * 119.99904 * 5 4 3 7 7 C 1.52997 * 109.47156 * 239.99573 * 5 4 3 8 8 C 1.38294 * 120.10987 * 359.97225 * 4 3 2 9 9 C 1.38117 * 120.05812 * 359.77602 * 8 4 3 10 10 C 1.38704 * 120.03278 * 179.97438 * 2 1 3 11 11 O 1.35902 * 120.05292 * 0.02562 * 10 2 1 12 12 C 1.42897 * 116.99752 * 179.97438 * 11 10 2 13 13 H 1.09003 * 109.47391 * 24.49586 * 12 11 10 14 14 C 1.50710 * 109.46967 * 144.48904 * 12 11 10 15 15 H 1.07999 * 119.99246 * 5.18365 * 14 12 11 16 16 C 1.37876 * 120.00129 * 185.17372 * 14 12 11 17 17 N 1.31517 * 119.99894 * 185.63410 * 16 14 12 18 18 Si 1.86801 * 119.99952 * 5.64540 * 16 14 12 19 19 H 1.48501 * 109.46868 * 269.99513 * 18 16 14 20 20 H 1.48503 * 109.47256 * 29.99054 * 18 16 14 21 21 H 1.48494 * 109.47151 * 149.99503 * 18 16 14 22 22 C 1.53000 * 109.47603 * 264.49242 * 12 11 10 23 23 Cl 1.80296 * 109.47069 * 65.57107 * 22 12 11 24 24 H 1.09004 * 109.47242 * 270.01961 * 1 2 3 25 25 H 1.09001 * 109.47273 * 30.02153 * 1 2 3 26 26 H 1.09000 * 109.46575 * 150.02658 * 1 2 3 27 27 H 1.08001 * 119.97188 * 359.95740 * 3 2 1 28 28 H 1.08992 * 109.47503 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47418 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47146 * 299.99912 * 6 5 4 31 31 H 1.09002 * 109.47198 * 59.99724 * 6 5 4 32 32 H 1.08997 * 109.46858 * 59.99920 * 7 5 4 33 33 H 1.08994 * 109.47567 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47111 * 300.00232 * 7 5 4 35 35 H 1.08000 * 119.96979 * 180.02562 * 8 4 3 36 36 H 1.08002 * 120.03314 * 180.27628 * 9 8 4 37 37 H 0.96998 * 119.99603 * 354.99811 * 17 16 14 38 38 H 1.08999 * 109.46887 * 185.57156 * 22 12 11 39 39 H 1.08999 * 109.46775 * 305.56959 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1964 0.0000 4 6 3.5808 1.1971 0.0005 5 6 4.3323 2.5033 0.0011 6 6 5.2113 2.5855 1.2507 7 6 5.2123 2.5860 -1.2477 8 6 4.2752 0.0012 0.0017 9 6 3.5888 -1.1974 0.0069 10 6 2.2012 -1.2008 0.0005 11 8 1.5235 -2.3788 0.0005 12 6 2.3036 -3.5760 0.0005 13 1 3.2855 -3.3699 0.4266 14 6 1.6088 -4.6283 0.8259 15 1 0.6275 -4.4342 1.2331 16 6 2.2257 -5.8387 1.0609 17 7 1.5770 -6.7971 1.6856 18 14 3.9831 -6.1173 0.4922 19 1 3.9756 -6.6706 -0.8859 20 1 4.7175 -4.8266 0.5032 21 1 4.6533 -7.0760 1.4069 22 6 2.4661 -4.0790 -1.4353 23 17 3.4400 -2.8925 -2.3811 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3632 -0.8903 -0.5134 27 1 1.6583 2.1316 -0.0007 28 1 3.6228 3.3307 0.0015 29 1 5.7552 3.5300 1.2510 30 1 4.5843 2.5266 2.1405 31 1 5.9208 1.7580 1.2509 32 1 4.5861 2.5274 -2.1379 33 1 5.7562 3.5305 -1.2471 34 1 5.9219 1.7585 -1.2475 35 1 5.3552 0.0044 0.0025 36 1 4.1315 -2.1311 0.0123 37 1 0.6918 -6.6292 2.0449 38 1 2.9753 -5.0427 -1.4272 39 1 1.4838 -4.1909 -1.8943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230212413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -47.970352 kcal Electronic energy + Delta-G solvation = -20411.378475 eV Core-core repulsion = 17344.214434 eV Total energy + Delta-G solvation = -3067.164041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.113 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84526 -37.74073 -35.38698 -34.78946 -33.30036 -32.03396 -30.36351 -28.79675 -27.11724 -26.25415 -24.89999 -22.96511 -22.38678 -20.32260 -19.22510 -17.99322 -17.31573 -15.85951 -15.04325 -15.00013 -14.36601 -14.27525 -13.90374 -13.49945 -13.36922 -13.21420 -12.93054 -12.66142 -12.63556 -12.42838 -12.25889 -12.12327 -11.81324 -11.57560 -11.23249 -11.13295 -10.93691 -10.75811 -10.66860 -10.50313 -10.29741 -10.03357 -9.81175 -9.51802 -9.00569 -8.77392 -8.29877 -7.33947 -6.81951 -4.50969 1.80006 1.94002 2.92969 3.11323 3.20231 3.31187 4.10569 4.15085 4.18748 4.82027 4.90316 4.92981 5.26062 5.27130 5.38006 5.50016 5.60587 5.61438 5.70128 5.72902 5.80793 5.83629 5.84105 5.90134 6.01750 6.04307 6.10983 6.16713 6.26151 6.28901 6.29741 6.56947 6.67059 6.83594 6.97644 7.02497 7.32493 7.38611 8.01433 8.22386 8.64983 9.19988 10.58500 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.005588 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.829728 B = 5009.822757 C = 5304.021873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.131 4.131 3 C -0.086 4.086 4 C -0.130 4.130 5 C -0.047 4.047 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.082 4.082 9 C -0.192 4.192 10 C 0.150 3.850 11 O -0.296 6.296 12 C 0.181 3.819 13 H 0.049 0.951 14 C -0.598 4.598 15 H 0.075 0.925 16 C 0.037 3.963 17 N -0.888 5.888 18 Si 1.033 2.967 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.275 1.275 22 C -0.051 4.051 23 Cl -0.223 7.223 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.275 0.725 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 14.740 -4.286 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.131 4.131 5 C -0.065 4.065 6 C -0.201 4.201 7 C -0.200 4.200 8 C -0.100 4.100 9 C -0.210 4.210 10 C 0.103 3.897 11 O -0.209 6.209 12 C 0.124 3.876 13 H 0.066 0.934 14 C -0.636 4.636 15 H 0.094 0.906 16 C -0.170 4.170 17 N -0.520 5.520 18 Si 0.860 3.140 19 H -0.201 1.201 20 H -0.197 1.197 21 H -0.201 1.201 22 C -0.113 4.113 23 Cl -0.197 7.197 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.110 13.604 -4.428 15.557 hybrid contribution -0.993 0.886 -0.044 1.332 sum 5.117 14.490 -4.472 16.005 Atomic orbital electron populations 1.20521 0.91144 1.02106 1.01784 1.19152 0.96098 0.90532 1.07403 1.20573 0.93182 0.96289 1.00353 1.19509 0.93319 0.94316 1.05926 1.19955 0.96626 0.94682 0.95246 1.21859 0.99487 1.01274 0.97432 1.21851 0.99472 1.01248 0.97439 1.20599 0.98965 0.91360 0.99081 1.21408 0.93707 0.99287 1.06609 1.18960 0.90428 0.86731 0.93575 1.86150 1.36228 1.12026 1.86491 1.20959 0.94168 0.81956 0.90488 0.93376 1.21999 1.06572 1.00105 1.34881 0.90638 1.25745 1.04715 0.91431 0.95116 1.70793 1.15138 1.32344 1.33772 0.84166 0.75384 0.77277 0.77184 1.20124 1.19684 1.20070 1.26191 0.97094 0.93104 0.94922 1.98670 1.76796 1.65998 1.78240 0.91951 0.92543 0.91201 0.86494 0.91110 0.92960 0.92623 0.92552 0.92684 0.92970 0.92574 0.86848 0.85040 0.91403 0.88987 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.79 36.01 0.35 -1.18 16 2 C -0.13 -2.30 5.89 -104.47 -0.62 -2.92 16 3 C -0.09 -1.30 9.32 -39.60 -0.37 -1.67 16 4 C -0.13 -1.90 4.78 -104.60 -0.50 -2.40 16 5 C -0.05 -0.53 3.09 -91.77 -0.28 -0.82 16 6 C -0.14 -1.50 9.00 37.16 0.33 -1.17 16 7 C -0.14 -1.51 9.01 37.16 0.33 -1.17 16 8 C -0.08 -1.31 8.70 -39.61 -0.34 -1.66 16 9 C -0.19 -3.62 7.15 -39.43 -0.28 -3.90 16 10 C 0.15 3.01 6.06 -39.22 -0.24 2.77 16 11 O -0.30 -6.72 8.76 -19.43 -0.17 -6.89 16 12 C 0.18 4.20 1.75 -27.88 -0.05 4.15 16 13 H 0.05 1.13 3.88 -51.93 -0.20 0.93 16 14 C -0.60 -16.03 9.24 -34.44 -0.32 -16.34 16 15 H 0.08 2.21 8.04 -52.49 -0.42 1.79 16 16 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 17 N -0.89 -25.56 13.70 55.43 0.76 -24.80 16 18 Si 1.03 23.22 25.33 -169.99 -4.31 18.91 16 19 H -0.27 -5.78 6.76 56.52 0.38 -5.39 16 20 H -0.27 -5.67 6.36 56.52 0.36 -5.32 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.05 -1.06 5.93 37.16 0.22 -0.84 16 23 Cl -0.22 -4.25 25.76 -51.86 -1.34 -5.59 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.07 1.18 7.53 -51.93 -0.39 0.79 16 27 H 0.12 1.47 7.94 -52.49 -0.42 1.05 16 28 H 0.07 0.74 7.87 -51.93 -0.41 0.34 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.60 7.38 -51.93 -0.38 0.22 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.61 7.39 -51.93 -0.38 0.22 16 35 H 0.11 1.60 7.09 -52.49 -0.37 1.23 16 36 H 0.13 2.60 5.02 -52.49 -0.26 2.34 16 37 H 0.28 7.89 8.72 -40.82 -0.36 7.53 16 38 H 0.09 1.93 4.37 -51.93 -0.23 1.70 16 39 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -27.58 321.11 -7.71 -35.29 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.64 Total: 4.47 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -1.86 Total: -26.24 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.76 Total: -24.80 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.17 Total: -6.89 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.31 Total: 18.91 kcal Atomic # 17 Polarization: -4.25 SS G_CDS: -1.34 Total: -5.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.58 -7.71 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230212413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.680 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds