Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86800 * 120.00053 * 2 1 4 4 H 1.48500 * 109.46777 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.47228 * 29.99738 * 3 2 1 6 6 H 1.48500 * 109.47133 * 150.00081 * 3 2 1 7 7 C 1.40003 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99444 * 197.96362 * 7 2 1 9 9 C 1.41036 * 120.00156 * 17.96206 * 7 2 1 10 10 C 1.40963 * 120.10045 * 204.68286 * 9 7 2 11 11 C 1.36234 * 119.92715 * 179.72049 * 10 9 7 12 12 C 1.39942 * 120.13845 * 0.57283 * 11 10 9 13 13 C 1.47959 * 119.89325 * 179.71903 * 12 11 10 14 14 C 1.39632 * 120.14396 * 129.72992 * 13 12 11 15 15 C 1.37910 * 119.85470 * 179.72159 * 14 13 12 16 16 C 1.38422 * 120.14363 * 359.97438 * 15 14 13 17 17 C 1.38362 * 120.29319 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.92764 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.49627 * 8.62653 * 18 17 16 20 20 C 1.52996 * 60.00072 * 252.50554 * 19 18 17 21 21 C 1.37961 * 120.14814 * 0.04415 * 17 16 15 22 22 C 1.40140 * 120.20677 * 359.44507 * 12 11 10 23 23 F 1.35101 * 119.95994 * 180.26682 * 22 12 11 24 24 C 1.36485 * 120.07312 * 0.25614 * 22 12 11 25 25 H 0.97008 * 119.99986 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.04205 * 0.04471 * 10 9 7 27 27 H 1.08000 * 119.93470 * 180.29487 * 11 10 9 28 28 H 1.08004 * 120.07231 * 359.70265 * 14 13 12 29 29 H 1.07998 * 119.93339 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.84946 * 180.02562 * 16 15 14 31 31 H 1.08997 * 115.55025 * 154.33115 * 18 17 16 32 32 H 1.09004 * 117.50426 * 359.97438 * 19 18 17 33 33 H 1.08997 * 117.50035 * 145.01974 * 19 18 17 34 34 H 1.08993 * 117.50362 * 252.51110 * 20 19 18 35 35 H 1.08999 * 117.51638 * 107.47789 * 20 19 18 36 36 H 1.08004 * 120.07075 * 179.97438 * 21 17 16 37 37 H 1.07997 * 120.06852 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4896 2.0463 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5396 1.4402 0.7000 7 6 2.0079 -1.2125 0.0005 8 1 3.0485 -1.2351 0.2890 9 6 1.3543 -2.4043 -0.3756 10 6 1.8269 -3.6475 0.0915 11 6 1.1893 -4.7961 -0.2694 12 6 0.0735 -4.7452 -1.1125 13 6 -0.6110 -5.9965 -1.5061 14 6 -1.9960 -6.1106 -1.3706 15 6 -2.6286 -7.2775 -1.7447 16 6 -1.8936 -8.3342 -2.2540 17 6 -0.5211 -8.2273 -2.3918 18 6 0.2711 -9.3831 -2.9466 19 6 -0.5121 -10.5632 -3.5251 20 6 0.2132 -10.7093 -2.1859 21 6 0.1242 -7.0656 -2.0210 22 6 -0.4009 -3.5125 -1.5806 23 9 -1.4818 -3.4688 -2.3899 24 6 0.2276 -2.3560 -1.2195 25 1 -0.4850 0.8401 -0.0004 26 1 2.6902 -3.6891 0.7390 27 1 1.5484 -5.7483 0.0922 28 1 -2.5706 -5.2868 -0.9735 29 1 -3.6999 -7.3670 -1.6409 30 1 -2.3940 -9.2457 -2.5458 31 1 1.2131 -9.1195 -3.4276 32 1 -1.6003 -10.5040 -3.5041 33 1 -0.0855 -11.0763 -4.3870 34 1 1.1169 -11.3183 -2.1667 35 1 -0.3976 -10.7457 -1.2838 36 1 1.1957 -6.9837 -2.1287 37 1 -0.1384 -1.4060 -1.5799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236085473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = 7.680547 kcal Electronic energy + Delta-G solvation = -20524.472988 eV Core-core repulsion = 17338.694695 eV Total energy + Delta-G solvation = -3185.778293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.68651 -39.31862 -37.57672 -36.38949 -33.95524 -31.41173 -30.42367 -29.17513 -28.68246 -25.42701 -23.51173 -22.65766 -22.14802 -20.98481 -20.88450 -19.25805 -17.72191 -16.77314 -15.91490 -15.56848 -14.98437 -14.93128 -14.67773 -14.43640 -14.33565 -13.72765 -13.43564 -13.00825 -12.72598 -12.44996 -12.24285 -11.90790 -11.88221 -11.67481 -11.32085 -11.26066 -11.04399 -10.83408 -10.63750 -10.54247 -10.37956 -10.27133 -10.01393 -9.69789 -9.39811 -8.44526 -8.18736 -7.57547 -7.30514 -6.98682 -4.59295 1.66024 1.81411 2.58265 2.83405 2.96184 2.99619 3.04991 3.75809 3.78805 4.25841 4.45855 4.63827 4.87676 5.01494 5.16428 5.34907 5.40241 5.49347 5.58377 5.61022 5.67250 5.75930 5.87428 6.02248 6.04535 6.11015 6.16631 6.44416 6.50281 6.61556 6.81157 6.82638 6.94115 6.96225 7.02232 7.21274 7.39407 7.45498 7.63169 7.72976 7.81057 8.05813 8.37454 8.61392 8.68631 9.91724 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035511 B = 0.003680 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.298544 B = 7607.214437 C = 8103.150801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.235 4.235 11 C -0.042 4.042 12 C -0.239 4.239 13 C 0.016 3.984 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.146 4.146 17 C -0.056 4.056 18 C -0.110 4.110 19 C -0.180 4.180 20 C -0.172 4.172 21 C -0.117 4.117 22 C 0.133 3.867 23 F -0.162 7.162 24 C -0.210 4.210 25 H 0.287 0.713 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -11.246 -3.159 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.254 4.254 11 C -0.061 4.061 12 C -0.241 4.241 13 C 0.016 3.984 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.164 4.164 17 C -0.056 4.056 18 C -0.128 4.128 19 C -0.217 4.217 20 C -0.209 4.209 21 C -0.135 4.135 22 C 0.114 3.886 23 F -0.141 7.141 24 C -0.230 4.230 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.123 -11.071 -3.163 11.568 hybrid contribution 0.053 0.847 -0.072 0.852 sum -1.070 -10.224 -3.235 10.777 Atomic orbital electron populations 1.69811 1.07846 1.30050 1.32060 1.26075 0.94816 1.01904 0.91975 0.86200 0.80494 0.79876 0.79637 1.18953 1.20039 1.18293 1.19703 0.98482 0.91088 1.38019 0.89557 1.17433 0.89774 0.92412 0.87250 1.20713 1.04422 0.92636 1.07635 1.20171 0.93315 0.97091 0.95509 1.17980 1.03731 0.89588 1.12807 1.18782 0.92471 0.92818 0.94314 1.21334 0.94395 0.97484 1.00731 1.20938 0.99161 0.93635 0.99647 1.20841 0.93458 0.98907 1.03201 1.18941 0.93182 0.93866 0.99637 1.21013 1.00339 0.87892 1.03551 1.23039 0.99577 1.02013 0.97067 1.22995 1.02759 0.99250 0.95894 1.21044 0.99583 0.92587 1.00280 1.17362 0.84905 0.94124 0.92215 1.91344 1.53652 1.97476 1.71628 1.20944 1.01621 0.96057 1.04358 0.90225 0.88141 0.88313 0.86449 0.86764 0.86926 0.87208 0.88446 0.88775 0.88749 0.88677 0.86372 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.15 10.96 55.55 0.61 -18.54 16 2 C 0.07 1.73 5.13 -17.33 -0.09 1.64 16 3 Si 0.91 17.54 29.60 -169.99 -5.03 12.51 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.45 -11.09 9.03 -37.86 -0.34 -11.44 16 8 H 0.09 2.03 7.91 -52.48 -0.42 1.62 16 9 C 0.13 3.43 5.57 -106.82 -0.60 2.83 16 10 C -0.23 -5.45 9.73 -39.27 -0.38 -5.83 16 11 C -0.04 -0.93 9.44 -39.66 -0.37 -1.30 16 12 C -0.24 -5.40 5.50 -104.56 -0.58 -5.98 16 13 C 0.02 0.33 5.30 -104.89 -0.56 -0.23 16 14 C -0.12 -2.28 8.85 -39.18 -0.35 -2.62 16 15 C -0.12 -1.84 10.03 -39.63 -0.40 -2.23 16 16 C -0.15 -2.16 9.30 -39.47 -0.37 -2.53 16 17 C -0.06 -0.87 5.61 -104.68 -0.59 -1.45 16 18 C -0.11 -1.36 6.04 -91.77 -0.55 -1.92 16 19 C -0.18 -1.83 9.86 -26.73 -0.26 -2.10 16 20 C -0.17 -1.79 10.16 -26.73 -0.27 -2.07 16 21 C -0.12 -2.07 9.21 -39.18 -0.36 -2.43 16 22 C 0.13 3.26 7.11 -39.50 -0.28 2.98 16 23 F -0.16 -3.87 15.86 2.25 0.04 -3.83 16 24 C -0.21 -5.42 8.60 -39.23 -0.34 -5.75 16 25 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.10 1.89 8.04 -52.49 -0.42 1.47 16 28 H 0.12 2.25 7.79 -52.48 -0.41 1.84 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.38 6.00 -52.49 -0.32 1.07 16 31 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 0.96 6.17 -51.93 -0.32 0.64 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.99 8.05 -52.48 -0.42 1.57 16 37 H 0.13 3.45 6.16 -52.49 -0.32 3.13 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -26.35 319.30 -10.55 -36.90 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.30 Total: 8.58 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: -6.68 Total: -40.43 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.61 Total: -18.54 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.35 -10.55 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236085473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.580 kcal (2) G-P(sol) polarization free energy of solvation -26.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds