Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47283 * 239.99913 * 3 2 1 5 5 H 1.48499 * 109.47631 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46986 * 120.00739 * 3 2 1 7 7 C 1.39925 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00229 * 162.53567 * 7 2 1 9 9 C 1.41426 * 119.99879 * 342.52415 * 7 2 1 10 10 C 1.40742 * 120.17607 * 335.01014 * 9 7 2 11 11 C 1.37898 * 119.96823 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.83783 * 179.97438 * 11 10 9 13 13 C 1.38663 * 120.32708 * 0.02562 * 11 10 9 14 14 C 1.39651 * 120.35143 * 359.97438 * 13 11 10 15 15 C 1.48410 * 119.98940 * 180.02562 * 14 13 11 16 16 C 1.39344 * 120.12412 * 179.70304 * 15 14 13 17 17 C 1.38000 * 119.88057 * 179.78946 * 16 15 14 18 18 C 1.38344 * 120.12027 * 0.46436 * 17 16 15 19 19 C 1.38301 * 120.23922 * 359.78983 * 18 17 16 20 20 C 1.50702 * 119.93847 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.49801 * 8.63867 * 20 19 18 22 22 C 1.52995 * 59.99838 * 252.51394 * 21 20 19 23 23 C 1.38035 * 120.12009 * 359.97408 * 19 18 17 24 24 C 1.38779 * 120.02656 * 0.02562 * 14 13 11 25 25 H 0.97003 * 119.99853 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.01663 * 359.70041 * 10 9 7 27 27 H 1.07996 * 119.82601 * 179.97438 * 13 11 10 28 28 H 1.08002 * 120.05694 * 359.97438 * 16 15 14 29 29 H 1.08003 * 119.93908 * 180.20457 * 17 16 15 30 30 H 1.07994 * 119.87879 * 179.76337 * 18 17 16 31 31 H 1.08998 * 115.55279 * 154.35007 * 20 19 18 32 32 H 1.09000 * 117.49959 * 0.02562 * 21 20 19 33 33 H 1.08998 * 117.49901 * 145.02600 * 21 20 19 34 34 H 1.09006 * 117.50110 * 252.50997 * 22 21 20 35 35 H 1.08998 * 117.52074 * 107.48776 * 22 21 20 36 36 H 1.08006 * 120.05908 * 179.97438 * 23 19 18 37 37 H 1.07992 * 120.16052 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0506 -1.2333 -0.2812 9 6 1.3498 -2.4085 0.3667 10 6 0.2212 -2.3660 1.2066 11 6 -0.4176 -3.5354 1.5616 12 9 -1.5004 -3.4917 2.3684 13 6 0.0465 -4.7561 1.0955 14 6 1.1651 -4.8139 0.2614 15 6 1.6547 -6.1247 -0.2333 16 6 2.7668 -6.1851 -1.0706 17 6 3.2204 -7.4070 -1.5241 18 6 2.5672 -8.5699 -1.1567 19 6 1.4597 -8.5153 -0.3302 20 6 0.7530 -9.7862 0.0654 21 6 1.4203 -11.1113 -0.3086 22 6 0.1683 -10.6476 -1.0558 23 6 1.0005 -7.2988 0.1332 24 6 1.8192 -3.6461 -0.1050 25 1 -0.4850 0.8401 0.0004 26 1 -0.1417 -1.4184 1.5765 27 1 -0.4597 -5.6670 1.3789 28 1 3.2748 -5.2775 -1.3617 29 1 4.0843 -7.4552 -2.1705 30 1 2.9232 -9.5237 -1.5170 31 1 0.2055 -9.7462 1.0070 32 1 2.3706 -11.0638 -0.8403 33 1 1.3119 -11.9434 0.3871 34 1 -0.7638 -11.1746 -0.8516 35 1 0.2943 -10.2949 -2.0794 36 1 0.1353 -7.2573 0.7783 37 1 2.6847 -3.6883 -0.7496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = 8.759475 kcal Electronic energy + Delta-G solvation = -20355.628944 eV Core-core repulsion = 17169.897437 eV Total energy + Delta-G solvation = -3185.731507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.69187 -39.54738 -37.64737 -36.35966 -33.89634 -31.44829 -30.71086 -29.60681 -27.77861 -25.62469 -23.79018 -22.85443 -22.29467 -21.34211 -20.42444 -19.37810 -17.55001 -16.71758 -15.87249 -15.72733 -15.18402 -14.89364 -14.58716 -14.36518 -14.26393 -13.99561 -13.64103 -12.94383 -12.86674 -12.77826 -12.22879 -12.00843 -11.69775 -11.66345 -11.28007 -11.17233 -11.11820 -10.95794 -10.65686 -10.49677 -10.44853 -10.36447 -10.00332 -9.70514 -9.35830 -8.72203 -8.33408 -7.56351 -7.11242 -6.88693 -4.56255 1.37928 1.67275 2.60397 2.84307 3.00616 3.02276 3.10630 3.75404 3.82949 4.20804 4.53122 4.57431 4.81650 4.95403 5.06633 5.17934 5.33048 5.38581 5.46406 5.54246 5.67732 5.72863 5.78941 5.87257 5.99592 6.04707 6.16022 6.23981 6.42702 6.56324 6.70211 6.74278 6.85738 6.86160 6.98545 7.11670 7.29817 7.45668 7.57753 7.69999 7.80010 8.08829 8.41604 8.68850 8.70865 10.03507 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.003892 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.832710 B = 7192.561726 C = 8118.587956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.193 4.193 11 C 0.105 3.895 12 F -0.166 7.166 13 C -0.261 4.261 14 C -0.014 4.014 15 C -0.011 4.011 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.138 4.138 19 C -0.056 4.056 20 C -0.112 4.112 21 C -0.179 4.179 22 C -0.171 4.171 23 C -0.111 4.111 24 C -0.209 4.209 25 H 0.285 0.715 26 H 0.130 0.870 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -12.583 -1.733 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.124 3.876 10 C -0.214 4.214 11 C 0.086 3.914 12 F -0.145 7.145 13 C -0.281 4.281 14 C -0.015 4.015 15 C -0.011 4.011 16 C -0.137 4.137 17 C -0.135 4.135 18 C -0.156 4.156 19 C -0.056 4.056 20 C -0.130 4.130 21 C -0.216 4.216 22 C -0.208 4.208 23 C -0.129 4.129 24 C -0.228 4.228 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.729 -12.412 -1.723 12.825 hybrid contribution 0.029 0.816 0.103 0.823 sum 2.758 -11.597 -1.620 12.030 Atomic orbital electron populations 1.69806 1.07707 1.29843 1.33667 1.25973 0.94778 1.01629 0.92036 0.86294 0.80123 0.79815 0.80143 1.18813 1.20205 1.18634 1.19564 0.98168 0.90891 1.39963 0.89833 1.17284 0.90178 0.92190 0.87946 1.21361 1.00822 0.95993 1.03184 1.17559 0.85427 0.95048 0.93373 1.91341 1.53717 1.97565 1.71895 1.20283 1.02730 0.95223 1.09823 1.18067 0.95211 0.90882 0.97296 1.19014 0.94120 0.92771 0.95193 1.21330 0.96672 0.97905 0.97765 1.20983 0.99828 0.92408 1.00272 1.20902 0.96615 0.98034 1.00009 1.18972 0.95707 0.92901 0.98054 1.21018 1.03028 0.89315 0.99650 1.23044 0.97329 0.97292 1.03935 1.23006 0.97396 1.03166 0.97261 1.21058 1.00117 0.90966 1.00712 1.21153 1.03671 0.91709 1.06263 0.90409 0.85265 0.87805 0.85490 0.86395 0.86665 0.87116 0.88419 0.88700 0.88660 0.88616 0.85869 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 10.97 55.55 0.61 -19.23 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.27 5.57 -106.88 -0.59 2.67 16 10 C -0.19 -5.04 8.65 -38.76 -0.34 -5.37 16 11 C 0.10 2.58 7.28 -39.55 -0.29 2.29 16 12 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 13 C -0.26 -5.91 9.41 -38.90 -0.37 -6.28 16 14 C -0.01 -0.32 5.87 -104.98 -0.62 -0.93 16 15 C -0.01 -0.21 5.88 -104.90 -0.62 -0.82 16 16 C -0.12 -2.00 9.42 -39.26 -0.37 -2.37 16 17 C -0.12 -1.66 10.03 -39.63 -0.40 -2.06 16 18 C -0.14 -1.87 9.29 -39.52 -0.37 -2.24 16 19 C -0.06 -0.82 5.61 -104.67 -0.59 -1.40 16 20 C -0.11 -1.32 6.04 -91.77 -0.55 -1.87 16 21 C -0.18 -1.71 9.86 -26.73 -0.26 -1.97 16 22 C -0.17 -1.72 10.16 -26.74 -0.27 -1.99 16 23 C -0.11 -1.87 9.11 -39.26 -0.36 -2.23 16 24 C -0.21 -4.89 9.17 -38.52 -0.35 -5.24 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.13 3.49 6.18 -52.48 -0.32 3.16 16 27 H 0.10 2.12 6.18 -52.49 -0.32 1.80 16 28 H 0.13 2.07 6.20 -52.49 -0.33 1.75 16 29 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.28 6.01 -52.49 -0.32 0.97 16 31 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 0.89 6.17 -51.93 -0.32 0.57 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.12 2.02 6.19 -52.48 -0.32 1.69 16 37 H 0.10 2.24 6.19 -52.49 -0.32 1.91 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -26.80 314.62 -10.33 -37.14 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.92 Total: 8.34 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -6.77 Total: -40.01 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.61 Total: -19.23 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.80 -10.33 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.895 kcal (2) G-P(sol) polarization free energy of solvation -26.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds