Wall clock time and date at job start Tue Mar 31 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86798 * 119.99714 * 2 1 4 4 H 1.48502 * 109.47360 * 89.99914 * 3 2 1 5 5 H 1.48502 * 109.47153 * 209.99733 * 3 2 1 6 6 H 1.48503 * 109.47358 * 329.99701 * 3 2 1 7 7 C 1.40074 * 119.99941 * 180.27375 * 2 1 3 8 8 H 1.08002 * 120.00044 * 329.17355 * 7 2 1 9 9 C 1.40798 * 119.99847 * 149.17788 * 7 2 1 10 10 C 1.41037 * 120.34384 * 324.75570 * 9 7 2 11 11 F 1.35096 * 120.09887 * 359.97438 * 10 9 7 12 12 C 1.37740 * 119.79658 * 179.97438 * 10 9 7 13 13 C 1.38806 * 120.52218 * 0.02562 * 12 10 9 14 14 C 1.38157 * 120.71346 * 359.97351 * 13 12 10 15 15 C 1.39054 * 120.17672 * 359.78701 * 14 13 12 16 16 C 1.47890 * 120.26288 * 180.23161 * 15 14 13 17 17 C 1.39644 * 120.15018 * 130.23446 * 16 15 14 18 18 C 1.37910 * 119.85466 * 180.02562 * 17 16 15 19 19 C 1.38419 * 120.14489 * 359.97438 * 18 17 16 20 20 C 1.38369 * 120.29624 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.92337 * 179.97438 * 20 19 18 22 22 C 1.53011 * 117.49850 * 8.62641 * 21 20 19 23 23 C 1.53002 * 117.50032 * 300.00406 * 21 20 19 24 24 C 1.37946 * 120.15242 * 359.72548 * 20 19 18 25 25 H 0.97001 * 120.00271 * 174.90518 * 1 2 3 26 26 H 1.08002 * 119.74243 * 179.97438 * 12 10 9 27 27 H 1.07995 * 119.64500 * 179.97438 * 13 12 10 28 28 H 1.07993 * 119.91287 * 180.02562 * 14 13 12 29 29 H 1.08004 * 120.07310 * 0.02766 * 17 16 15 30 30 H 1.08000 * 119.92964 * 180.02562 * 18 17 16 31 31 H 1.08003 * 119.84977 * 180.02562 * 19 18 17 32 32 H 1.08997 * 115.55362 * 154.32669 * 21 20 19 33 33 H 1.08995 * 117.49401 * 359.97438 * 22 21 20 34 34 H 1.08997 * 117.50140 * 145.02216 * 22 21 20 35 35 H 1.09000 * 117.49900 * 214.97671 * 23 21 20 36 36 H 1.08995 * 117.49603 * 359.97438 * 23 21 20 37 37 H 1.07996 * 120.08111 * 180.27981 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0465 1.4001 5 1 3.5394 1.4403 -0.7000 6 1 1.4392 2.6527 -0.7001 7 6 2.0082 -1.2131 -0.0058 8 1 1.5827 -2.0846 0.4693 9 6 3.2671 -1.2962 -0.6310 10 6 3.5316 -0.5551 -1.8014 11 9 2.5760 0.2399 -2.3304 12 6 4.7672 -0.6445 -2.4035 13 6 5.7553 -1.4590 -1.8677 14 6 5.5192 -2.1941 -0.7220 15 6 4.2840 -2.1222 -0.0874 16 6 4.0310 -2.9044 1.1420 17 6 3.4902 -2.2831 2.2697 18 6 3.2572 -3.0183 3.4130 19 6 3.5577 -4.3691 3.4442 20 6 4.0937 -4.9908 2.3303 21 6 4.4182 -6.4618 2.3737 22 6 3.9492 -7.2530 3.5965 23 6 5.4341 -6.9307 3.4172 24 6 4.3269 -4.2684 1.1785 25 1 -0.4850 -0.8367 -0.0746 26 1 4.9687 -0.0769 -3.3000 27 1 6.7189 -1.5187 -2.3515 28 1 6.2973 -2.8234 -0.3160 29 1 3.2549 -1.2293 2.2465 30 1 2.8387 -2.5391 4.2857 31 1 3.3729 -4.9403 4.3420 32 1 4.4131 -6.9730 1.4110 33 1 3.4064 -6.7093 4.3697 34 1 3.6355 -8.2848 3.4385 35 1 6.0973 -7.7506 3.1411 36 1 5.8681 -6.1751 4.0720 37 1 4.7411 -4.7558 0.3083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:49 Heat of formation + Delta-G solvation = 14.609546 kcal Electronic energy + Delta-G solvation = -21217.086646 eV Core-core repulsion = 18031.608818 eV Total energy + Delta-G solvation = -3185.477829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.67839 -39.31935 -37.66607 -36.13460 -33.88085 -31.61931 -30.52408 -29.79008 -28.03561 -25.09797 -23.38670 -22.73399 -22.18021 -20.87006 -20.74511 -19.12034 -18.49925 -16.74897 -15.87289 -15.48565 -15.28432 -14.88679 -14.79737 -14.43152 -13.89119 -13.60476 -13.55125 -13.10373 -12.80778 -12.46396 -12.28321 -11.91741 -11.81298 -11.55035 -11.27567 -10.98377 -10.91500 -10.70813 -10.50904 -10.48718 -10.29311 -10.16898 -9.94482 -9.48352 -9.06372 -8.43765 -8.05951 -7.74077 -7.37597 -7.34601 -4.59039 1.71521 1.94396 2.49006 2.56791 3.26847 3.31633 3.48365 3.85971 4.03751 4.35366 4.48174 4.69599 4.93198 5.06098 5.10243 5.25737 5.46200 5.55083 5.57095 5.68737 5.77979 5.81644 5.87594 5.99098 6.08908 6.12148 6.16898 6.25034 6.32832 6.60874 6.63559 6.77356 6.99895 7.08896 7.23067 7.25347 7.28039 7.44057 7.49191 7.65695 7.69910 7.83649 8.21913 8.39029 8.61691 9.84621 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020883 B = 0.005667 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.479266 B = 4939.874826 C = 5782.864346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.056 3.944 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.261 1.261 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.089 0.911 9 C 0.085 3.915 10 C -0.017 4.017 11 F -0.150 7.150 12 C -0.107 4.107 13 C -0.228 4.228 14 C -0.069 4.069 15 C -0.158 4.158 16 C 0.017 3.983 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.063 4.063 21 C -0.108 4.108 22 C -0.181 4.181 23 C -0.173 4.173 24 C -0.120 4.120 25 H 0.290 0.710 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -7.340 4.848 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.168 4.168 3 Si 0.891 3.109 4 H -0.220 1.220 5 H -0.185 1.185 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.107 0.893 9 C 0.081 3.919 10 C -0.037 4.037 11 F -0.129 7.129 12 C -0.127 4.127 13 C -0.247 4.247 14 C -0.087 4.087 15 C -0.159 4.159 16 C 0.017 3.983 17 C -0.112 4.112 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.063 4.063 21 C -0.126 4.126 22 C -0.217 4.217 23 C -0.210 4.210 24 C -0.138 4.138 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.806 -5.722 4.899 10.152 hybrid contribution -0.216 -1.656 -0.261 1.690 sum 6.590 -7.377 4.639 10.926 Atomic orbital electron populations 1.70513 1.08750 1.33098 1.28199 1.27355 0.95313 1.04498 0.89624 0.83696 0.77420 0.73191 0.76607 1.21990 1.18544 1.20225 1.20405 1.01176 0.99169 1.33300 0.89309 1.17586 0.93025 0.90998 0.90307 1.17642 0.87211 1.02145 0.96696 1.91079 1.63876 1.72116 1.85834 1.20638 0.92546 0.99906 0.99573 1.20084 0.98784 1.05230 1.00572 1.20715 0.95501 0.97721 0.94764 1.18447 0.93735 1.07040 0.96703 1.18665 0.94994 0.91912 0.92775 1.21386 0.97377 1.00665 0.91766 1.20979 1.01013 0.94045 0.98164 1.20839 1.02396 0.94866 0.97874 1.18866 1.00386 0.92738 0.94265 1.20996 1.04232 0.92690 0.94684 1.23037 0.97382 1.00655 1.00653 1.22990 0.92164 1.03172 1.02644 1.21018 1.02178 0.93412 0.97160 0.89830 0.87711 0.87949 0.88186 0.85493 0.86833 0.87111 0.87388 0.88436 0.88856 0.88870 0.88702 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.78 13.65 55.55 0.76 -20.02 16 2 C 0.06 1.45 4.68 -17.31 -0.08 1.37 16 3 Si 1.07 24.67 25.88 -169.99 -4.40 20.27 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.26 -6.05 5.39 56.52 0.30 -5.75 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.32 7.01 -37.93 -0.27 -13.58 16 8 H 0.09 2.42 7.30 -52.49 -0.38 2.03 16 9 C 0.08 2.10 4.86 -106.49 -0.52 1.58 16 10 C -0.02 -0.42 5.07 -38.70 -0.20 -0.62 16 11 F -0.15 -3.77 12.93 2.25 0.03 -3.74 16 12 C -0.11 -2.32 9.99 -39.55 -0.40 -2.71 16 13 C -0.23 -4.54 10.03 -39.40 -0.40 -4.93 16 14 C -0.07 -1.40 9.49 -39.31 -0.37 -1.77 16 15 C -0.16 -3.55 5.52 -104.27 -0.58 -4.13 16 16 C 0.02 0.34 4.96 -104.90 -0.52 -0.18 16 17 C -0.09 -1.89 8.20 -39.18 -0.32 -2.21 16 18 C -0.12 -2.15 10.03 -39.63 -0.40 -2.54 16 19 C -0.14 -2.26 9.30 -39.47 -0.37 -2.63 16 20 C -0.06 -1.02 5.61 -104.68 -0.59 -1.60 16 21 C -0.11 -1.42 6.04 -91.77 -0.55 -1.97 16 22 C -0.18 -1.98 9.86 -26.72 -0.26 -2.24 16 23 C -0.17 -1.89 10.16 -26.73 -0.27 -2.16 16 24 C -0.12 -2.19 9.20 -39.17 -0.36 -2.55 16 25 H 0.29 7.49 8.73 -40.82 -0.36 7.13 16 26 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 27 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.10 1.79 8.04 -52.49 -0.42 1.36 16 29 H 0.13 2.70 7.30 -52.48 -0.38 2.32 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.49 6.00 -52.48 -0.32 1.18 16 32 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.06 6.17 -51.93 -0.32 0.74 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -26.58 310.37 -9.83 -36.41 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.45 Total: 5.29 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: -6.44 Total: -42.88 kcal Atomic # 7 Polarization: -20.78 SS G_CDS: 0.76 Total: -20.02 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.03 Total: -3.74 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.40 Total: 20.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.58 -9.83 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.016 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds