Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47290 * 299.99483 * 3 2 1 6 6 H 1.48496 * 109.47460 * 59.99774 * 3 2 1 7 7 C 1.37879 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46860 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99954 * 170.00024 * 10 9 7 12 12 C 1.53052 * 109.36633 * 183.18681 * 11 10 9 13 13 N 1.46957 * 109.36627 * 301.60192 * 12 11 10 14 14 C 1.46900 * 111.00166 * 183.18556 * 13 12 11 15 15 C 1.50697 * 109.46978 * 169.99684 * 14 13 12 16 16 O 1.34635 * 125.85365 * 270.02208 * 15 14 13 17 17 C 1.34264 * 109.53425 * 179.97438 * 16 15 14 18 18 C 1.34485 * 108.58116 * 0.02562 * 17 16 15 19 19 C 1.35027 * 125.84992 * 90.00629 * 15 14 13 20 20 S 1.76201 * 126.64001 * 0.02562 * 19 15 14 21 21 C 1.46957 * 110.88109 * 59.31665 * 13 12 11 22 22 C 1.46955 * 111.00188 * 293.79743 * 10 9 7 23 23 H 0.96991 * 120.00736 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47124 * 60.00330 * 9 7 2 25 25 H 1.08998 * 109.47465 * 300.00112 * 9 7 2 26 26 H 1.09005 * 109.49218 * 63.22174 * 11 10 9 27 27 H 1.08998 * 109.49026 * 303.15473 * 11 10 9 28 28 H 1.08998 * 109.49013 * 181.62914 * 12 11 10 29 29 H 1.09002 * 109.48513 * 61.56593 * 12 11 10 30 30 H 1.08998 * 109.46747 * 50.00003 * 14 13 12 31 31 H 1.08994 * 109.46930 * 289.99999 * 14 13 12 32 32 H 1.08000 * 125.71464 * 180.02562 * 17 16 15 33 33 H 1.07992 * 126.56824 * 179.73907 * 18 17 16 34 34 H 1.34495 * 102.99849 * 270.02942 * 20 19 15 35 35 H 1.08998 * 109.48881 * 60.64762 * 21 13 12 36 36 H 1.08998 * 109.49026 * 180.71539 * 21 13 12 37 37 H 1.08995 * 109.49306 * 296.78200 * 22 10 9 38 38 H 1.09003 * 109.48629 * 56.82775 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5212 -4.8940 0.2388 12 6 2.5567 -6.0187 0.3104 13 7 3.3198 -6.0592 -0.9449 14 6 4.2745 -7.1757 -0.9449 15 6 4.8585 -7.3372 -2.3247 16 8 4.3584 -8.1101 -3.3071 17 6 5.1359 -8.0098 -4.3971 18 6 6.1488 -7.1679 -4.1249 19 6 5.9728 -6.7313 -2.7877 20 16 7.0081 -5.6146 -1.9012 21 6 4.0045 -4.7808 -1.1831 22 6 2.9688 -3.6562 -1.2547 23 1 -0.4851 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 0.8256 -5.0916 -0.5769 27 1 0.9736 -4.8434 1.1799 28 1 2.0489 -6.9717 0.4582 29 1 3.2358 -5.8352 1.1430 30 1 3.7605 -8.0931 -0.6582 31 1 5.0743 -6.9698 -0.2336 32 1 4.9751 -8.5198 -5.3354 33 1 6.9458 -6.8824 -4.7953 34 1 6.4618 -4.4158 -2.1721 35 1 4.7000 -4.5833 -0.3675 36 1 4.5520 -4.8314 -2.1242 37 1 2.2898 -3.8396 -2.0874 38 1 3.4765 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237177659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = 37.671966 kcal Electronic energy + Delta-G solvation = -20221.167409 eV Core-core repulsion = 17192.053555 eV Total energy + Delta-G solvation = -3029.113854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.74939 -38.84720 -35.42069 -33.24395 -32.60242 -30.91881 -30.41979 -28.06542 -25.95668 -23.86790 -23.21805 -22.16889 -21.46750 -20.90448 -19.29116 -18.03788 -17.14612 -16.43773 -16.27314 -15.52247 -15.07116 -14.72446 -14.56192 -14.33410 -14.03938 -13.77569 -13.55392 -13.26842 -12.98135 -12.64357 -12.14229 -11.93636 -11.82658 -11.34243 -11.19199 -10.93104 -10.80137 -10.67487 -10.43909 -10.34836 -9.89342 -9.76471 -9.20652 -8.76500 -8.47212 -8.42009 -8.02578 -7.28114 -6.05445 -4.07038 1.21402 1.62683 2.12836 2.72442 3.01077 3.28576 3.36091 3.40548 4.00762 4.39763 4.46572 4.71273 4.87666 4.96841 5.16058 5.24084 5.30310 5.45309 5.47698 5.51475 5.65620 5.74950 5.79850 5.81093 5.94855 6.09720 6.13003 6.37590 6.50724 6.59491 6.81734 7.02224 7.06744 7.28826 7.32713 7.76742 8.04769 8.15954 8.51290 9.00527 9.57391 11.05495 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.004254 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.212914 B = 6580.184284 C = 7216.117056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.535 5.535 14 C 0.121 3.879 15 C 0.073 3.927 16 O -0.162 6.162 17 C -0.041 4.041 18 C -0.181 4.181 19 C -0.199 4.199 20 S -0.089 6.089 21 C 0.053 3.947 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.206 0.794 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -16.998 -5.467 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.261 5.261 14 C -0.007 4.007 15 C 0.018 3.982 16 O -0.056 6.056 17 C -0.110 4.110 18 C -0.202 4.202 19 C -0.313 4.313 20 S 0.066 5.934 21 C -0.075 4.075 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.223 0.777 33 H 0.172 0.828 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.912 -16.650 -4.900 20.501 hybrid contribution -0.575 1.327 -1.143 1.843 sum 10.337 -15.322 -6.043 19.446 Atomic orbital electron populations 1.69962 1.06057 1.26701 1.51013 1.24985 0.94855 0.99305 0.95415 0.86460 0.80045 0.83474 0.77559 1.19715 1.21101 1.20925 1.21178 0.93439 0.89962 1.50053 0.91952 1.19716 0.90028 0.87260 0.96188 1.62292 1.28185 1.02839 1.32879 1.22078 0.94681 0.89833 1.00723 1.22198 0.96053 0.99035 0.89210 1.62165 1.25081 1.02781 1.36029 1.20644 0.96083 0.96690 0.87239 1.22874 0.92367 0.91923 0.91051 1.84165 1.46801 1.54684 1.19980 1.24006 0.92486 1.03535 0.90973 1.21966 1.01386 1.01174 0.95706 1.21365 1.02499 1.08763 0.98702 1.85620 1.40082 1.02825 1.64849 1.22557 0.96498 0.88692 0.99754 1.21983 0.95447 0.97180 0.91518 0.92944 0.99076 0.95058 0.95056 0.90622 0.90705 0.93611 0.88634 0.90009 0.77710 0.82764 0.95609 0.93193 0.92455 0.95421 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 10 N -0.54 -11.68 4.70 -235.91 -1.11 -12.79 16 11 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 12 C 0.06 0.91 5.61 -3.77 -0.02 0.88 16 13 N -0.53 -7.96 4.70 -235.91 -1.11 -9.07 16 14 C 0.12 1.46 5.29 -4.98 -0.03 1.44 16 15 C 0.07 0.94 6.26 -35.45 -0.22 0.72 16 16 O -0.16 -2.00 10.66 4.90 0.05 -1.94 16 17 C -0.04 -0.40 12.07 29.41 0.36 -0.05 16 18 C -0.18 -1.93 10.90 -39.56 -0.43 -2.36 16 19 C -0.20 -2.50 5.42 -39.37 -0.21 -2.71 16 20 S -0.09 -1.10 24.13 -107.50 -2.59 -3.69 16 21 C 0.05 0.87 4.25 -3.77 -0.02 0.86 16 22 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 25 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 28 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 31 H 0.08 0.94 7.78 -51.93 -0.40 0.53 16 32 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.08 1.05 7.73 97.61 0.75 1.80 16 35 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.06 0.92 4.65 -51.93 -0.24 0.67 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -31.05 319.15 -9.64 -40.69 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.38 Total: -1.70 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.03 Total: -6.95 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -1.48 Total: -47.89 kcal Atomic # 8 Polarization: -2.00 SS G_CDS: 0.05 Total: -1.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.59 Total: -3.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.05 -9.64 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237177659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds