Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47290 * 299.99483 * 3 2 1 6 6 H 1.48496 * 109.47460 * 59.99774 * 3 2 1 7 7 C 1.37879 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99680 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46860 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99954 * 170.00024 * 10 9 7 12 12 C 1.53052 * 109.36633 * 183.18681 * 11 10 9 13 13 N 1.46957 * 109.36627 * 301.60192 * 12 11 10 14 14 C 1.46900 * 111.00166 * 183.18556 * 13 12 11 15 15 C 1.50697 * 109.46978 * 169.99684 * 14 13 12 16 16 O 1.34635 * 125.85365 * 270.02208 * 15 14 13 17 17 C 1.34264 * 109.53425 * 179.97438 * 16 15 14 18 18 C 1.34485 * 108.58116 * 0.02562 * 17 16 15 19 19 C 1.35027 * 125.84992 * 90.00629 * 15 14 13 20 20 S 1.76201 * 126.64001 * 0.02562 * 19 15 14 21 21 C 1.46957 * 110.88109 * 59.31665 * 13 12 11 22 22 C 1.46955 * 111.00188 * 293.79743 * 10 9 7 23 23 H 0.96991 * 120.00736 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47124 * 60.00330 * 9 7 2 25 25 H 1.08998 * 109.47465 * 300.00112 * 9 7 2 26 26 H 1.09005 * 109.49218 * 63.22174 * 11 10 9 27 27 H 1.08998 * 109.49026 * 303.15473 * 11 10 9 28 28 H 1.08998 * 109.49013 * 181.62914 * 12 11 10 29 29 H 1.09002 * 109.48513 * 61.56593 * 12 11 10 30 30 H 1.08998 * 109.46747 * 50.00003 * 14 13 12 31 31 H 1.08994 * 109.46930 * 289.99999 * 14 13 12 32 32 H 1.08000 * 125.71464 * 180.02562 * 17 16 15 33 33 H 1.07992 * 126.56824 * 179.73907 * 18 17 16 34 34 H 1.34495 * 102.99849 * 270.02942 * 20 19 15 35 35 H 1.08998 * 109.48881 * 60.64762 * 21 13 12 36 36 H 1.08998 * 109.49026 * 180.71539 * 21 13 12 37 37 H 1.08995 * 109.49306 * 296.78200 * 22 10 9 38 38 H 1.09003 * 109.48629 * 56.82775 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5212 -4.8940 0.2388 12 6 2.5567 -6.0187 0.3104 13 7 3.3198 -6.0592 -0.9449 14 6 4.2745 -7.1757 -0.9449 15 6 4.8585 -7.3372 -2.3247 16 8 4.3584 -8.1101 -3.3071 17 6 5.1359 -8.0098 -4.3971 18 6 6.1488 -7.1679 -4.1249 19 6 5.9728 -6.7313 -2.7877 20 16 7.0081 -5.6146 -1.9012 21 6 4.0045 -4.7808 -1.1831 22 6 2.9688 -3.6562 -1.2547 23 1 -0.4851 0.8399 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 0.8256 -5.0916 -0.5769 27 1 0.9736 -4.8434 1.1799 28 1 2.0489 -6.9717 0.4582 29 1 3.2358 -5.8352 1.1430 30 1 3.7605 -8.0931 -0.6582 31 1 5.0743 -6.9698 -0.2336 32 1 4.9751 -8.5198 -5.3354 33 1 6.9458 -6.8824 -4.7953 34 1 6.4618 -4.4158 -2.1721 35 1 4.7000 -4.5833 -0.3675 36 1 4.5520 -4.8314 -2.1242 37 1 2.2898 -3.8396 -2.0874 38 1 3.4765 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237177659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = 15.640209 kcal Electronic energy + Delta-G solvation = -20222.122778 eV Core-core repulsion = 17192.053555 eV Total energy + Delta-G solvation = -3030.069223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.60089 -40.24883 -36.95848 -34.72699 -34.04868 -32.16054 -31.77813 -29.65849 -27.49369 -25.36120 -24.59531 -23.29595 -23.05455 -21.79615 -20.76675 -18.91565 -18.53910 -18.16094 -17.33635 -16.92867 -16.32209 -16.15401 -15.89160 -15.84978 -15.35726 -15.17925 -14.93079 -14.40896 -14.25224 -13.82398 -13.66026 -13.39280 -13.20405 -12.88034 -12.76822 -12.50740 -12.36066 -12.31073 -12.12020 -11.95669 -11.55985 -11.23528 -10.76120 -10.66419 -9.69650 -9.46885 -9.13816 -9.01352 -8.24929 -6.35477 0.26672 0.73644 1.29811 1.37417 1.38129 1.51466 1.83738 2.11980 2.36377 2.87730 3.07111 3.21454 3.62531 3.84497 3.90353 4.04754 4.10970 4.24684 4.32420 4.41160 4.48235 4.57049 4.61519 4.75516 4.77024 4.88340 4.93318 4.96202 4.98354 5.14642 5.22087 5.36392 5.58820 5.81834 5.89312 5.99372 6.02767 6.25051 6.56094 6.79948 7.34441 8.86611 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.004254 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.212914 B = 6580.184284 C = 7216.117056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.208 3.792 10 N -0.541 5.541 11 C 0.052 3.948 12 C 0.072 3.928 13 N -0.546 5.546 14 C 0.124 3.876 15 C 0.054 3.946 16 O -0.174 6.174 17 C -0.029 4.029 18 C -0.199 4.199 19 C -0.213 4.213 20 S -0.081 6.081 21 C 0.072 3.928 22 C 0.071 3.929 23 H 0.265 0.735 24 H -0.042 1.042 25 H 0.009 0.991 26 H 0.020 0.980 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.246 0.754 33 H 0.171 0.829 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.009 0.991 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.120 -18.260 -5.797 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.082 3.918 10 N -0.266 5.266 11 C -0.077 4.077 12 C -0.055 4.055 13 N -0.271 5.271 14 C -0.003 4.003 15 C -0.002 4.002 16 O -0.069 6.069 17 C -0.097 4.097 18 C -0.220 4.220 19 C -0.328 4.328 20 S 0.074 5.926 21 C -0.056 4.056 22 C -0.058 4.058 23 H 0.074 0.926 24 H -0.024 1.024 25 H 0.027 0.973 26 H 0.038 0.962 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.262 0.738 33 H 0.189 0.811 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.362 -17.942 -5.228 22.407 hybrid contribution -1.040 1.631 -1.103 2.227 sum 11.322 -16.311 -6.331 20.840 Atomic orbital electron populations 1.70084 1.07724 1.27935 1.51648 1.25907 0.95742 1.03178 0.94681 0.85338 0.78877 0.78565 0.77871 1.18866 1.20394 1.20075 1.21455 0.93483 0.91098 1.50246 0.92121 1.19368 0.90060 0.88937 0.93455 1.62228 1.27352 1.03377 1.33594 1.22221 0.95772 0.89297 1.00395 1.22159 0.95274 0.98873 0.89238 1.62104 1.26011 1.02660 1.36365 1.20706 0.95919 0.96212 0.87426 1.22949 0.92806 0.92822 0.91584 1.84165 1.47393 1.54723 1.20570 1.24828 0.91173 1.02432 0.91253 1.22265 1.02566 1.01814 0.95326 1.21628 1.02697 1.08693 0.99734 1.85561 1.39924 1.02100 1.65017 1.22274 0.94913 0.88369 1.00090 1.21925 0.95647 0.98036 0.90185 0.92585 1.02448 0.97284 0.96211 0.90197 0.87123 0.93006 0.86208 0.89230 0.73766 0.81115 0.96957 0.93203 0.91923 0.97223 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.52 -30.36 8.47 25.60 0.22 -30.14 16 8 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 9 C 0.21 11.43 4.72 85.56 0.40 11.84 16 10 N -0.54 -24.15 4.70 -900.27 -4.23 -28.38 16 11 C 0.05 1.87 5.61 86.31 0.48 2.35 16 12 C 0.07 1.93 5.61 86.31 0.48 2.41 16 13 N -0.55 -15.33 4.70 -900.30 -4.23 -19.56 16 14 C 0.12 2.69 5.29 85.56 0.45 3.15 16 15 C 0.05 1.26 6.26 24.95 0.16 1.42 16 16 O -0.17 -3.87 10.66 -5.37 -0.06 -3.92 16 17 C -0.03 -0.48 12.07 66.96 0.81 0.33 16 18 C -0.20 -3.81 10.90 22.28 0.24 -3.57 16 19 C -0.21 -5.01 5.42 22.40 0.12 -4.89 16 20 S -0.08 -1.92 24.13 -56.49 -1.36 -3.29 16 21 C 0.07 2.34 4.25 86.31 0.37 2.70 16 22 C 0.07 2.95 5.43 86.31 0.47 3.42 16 23 H 0.27 15.10 8.31 -92.72 -0.77 14.33 16 24 H -0.04 -2.55 8.12 -2.38 -0.02 -2.57 16 25 H 0.01 0.53 8.03 -2.39 -0.02 0.51 16 26 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.08 2.78 8.07 -2.39 -0.02 2.77 16 28 H 0.11 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.12 2.02 8.03 -2.39 -0.02 2.00 16 31 H 0.09 1.82 7.78 -2.39 -0.02 1.80 16 32 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.07 1.72 7.73 73.35 0.57 2.29 16 35 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 36 H 0.06 1.98 4.65 -2.39 -0.01 1.96 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.06 2.89 6.79 -2.39 -0.02 2.87 16 Total: -1.00 -68.52 319.15 -1.27 -69.80 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.63 Total: 5.45 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.67 Total: -10.34 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -8.18 Total: -104.53 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.06 Total: -3.92 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -1.36 Total: -3.29 kcal Total: -68.52 -1.27 -69.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237177659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.436 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds