Wall clock time and date at job start Tue Mar 31 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48496 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47297 * 299.99503 * 3 2 1 6 6 H 1.48498 * 109.47515 * 59.99836 * 3 2 1 7 7 C 1.39925 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99988 * 162.78524 * 7 2 1 9 9 C 1.41433 * 119.99533 * 342.79220 * 7 2 1 10 10 C 1.40742 * 120.17516 * 334.77256 * 9 7 2 11 11 C 1.37899 * 119.96535 * 179.72588 * 10 9 7 12 12 F 1.35101 * 119.83627 * 180.22998 * 11 10 9 13 13 C 1.38659 * 120.32602 * 0.25017 * 11 10 9 14 14 C 1.39645 * 120.35650 * 0.02574 * 13 11 10 15 15 C 1.48418 * 119.99299 * 179.97438 * 14 13 11 16 16 C 1.39318 * 120.12262 * 179.72199 * 15 14 13 17 17 C 1.38030 * 119.88067 * 179.74298 * 16 15 14 18 18 C 1.38322 * 120.11429 * 0.55519 * 17 16 15 19 19 C 1.50694 * 119.87509 * 179.72195 * 18 17 16 20 20 C 1.52998 * 117.50155 * 8.72288 * 19 18 17 21 21 C 1.53003 * 117.50166 * 300.06077 * 19 18 17 22 22 C 1.38322 * 120.24386 * 359.69362 * 18 17 16 23 23 C 1.38019 * 120.11910 * 0.02856 * 22 18 17 24 24 C 1.38774 * 120.02638 * 359.94916 * 14 13 11 25 25 H 0.96999 * 119.99927 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.01810 * 359.97438 * 10 9 7 27 27 H 1.08012 * 119.82401 * 179.97438 * 13 11 10 28 28 H 1.08003 * 120.06477 * 0.02562 * 16 15 14 29 29 H 1.07997 * 119.94302 * 180.27300 * 17 16 15 30 30 H 1.09001 * 115.54778 * 154.39293 * 19 18 17 31 31 H 1.08999 * 117.50233 * 359.97438 * 20 19 18 32 32 H 1.08996 * 117.50201 * 145.02218 * 20 19 18 33 33 H 1.09000 * 117.50053 * 214.98489 * 21 19 18 34 34 H 1.09000 * 117.49620 * 359.97438 * 21 19 18 35 35 H 1.08001 * 119.94321 * 180.02562 * 22 18 17 36 36 H 1.08000 * 120.06341 * 180.02562 * 23 22 18 37 37 H 1.07997 * 120.16791 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3966 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0517 -1.2327 -0.2762 9 6 1.3483 -2.4090 0.3635 10 6 0.2194 -2.3682 1.2028 11 6 -0.4239 -3.5377 1.5494 12 9 -1.5102 -3.4951 2.3515 13 6 0.0389 -4.7572 1.0789 14 6 1.1613 -4.8139 0.2500 15 6 1.6501 -6.1236 -0.2484 16 6 2.7661 -6.1828 -1.0803 17 6 3.2196 -7.4040 -1.5366 18 6 2.5612 -8.5667 -1.1788 19 6 3.0572 -9.8965 -1.6852 20 6 4.4010 -9.9174 -2.4164 21 6 3.0996 -10.1043 -3.2005 22 6 1.4496 -8.5132 -0.3573 23 6 0.9911 -7.2979 0.1093 24 6 1.8196 -3.6460 -0.1084 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1454 -1.4211 1.5721 27 1 -0.4709 -5.6683 1.3558 28 1 3.2783 -5.2753 -1.3639 29 1 4.0873 -7.4515 -2.1779 30 1 2.8078 -10.7581 -1.0659 31 1 4.9261 -8.9692 -2.5316 32 1 5.0355 -10.7929 -2.2786 33 1 2.8784 -11.1026 -3.5780 34 1 2.7683 -9.2792 -3.8310 35 1 0.9395 -9.4241 -0.0806 36 1 0.1233 -7.2573 0.7510 37 1 2.6876 -3.6871 -0.7497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238835004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:23 Heat of formation + Delta-G solvation = -0.968507 kcal Electronic energy + Delta-G solvation = -20258.934995 eV Core-core repulsion = 17072.781651 eV Total energy + Delta-G solvation = -3186.153344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.61925 -40.75813 -39.23374 -37.50327 -35.62307 -32.85407 -32.20985 -31.26874 -29.44920 -27.45255 -25.07131 -24.06131 -23.12576 -22.63512 -21.98280 -21.01861 -19.45060 -18.06386 -17.42122 -16.95263 -16.86705 -16.42292 -16.28261 -16.04689 -15.60681 -15.22363 -14.79219 -14.74416 -14.24657 -14.07079 -13.87371 -13.45492 -13.30938 -13.03452 -12.78496 -12.66085 -12.33845 -12.20641 -12.12228 -11.98638 -11.71619 -11.58710 -11.39088 -11.16960 -11.09059 -10.01815 -9.83163 -9.44297 -8.76779 -8.62644 -6.49792 -0.06296 0.52974 0.74393 1.16074 1.38458 1.49706 1.54710 2.17290 2.51266 2.85355 3.22569 3.56377 3.59043 3.71240 3.89512 4.04908 4.08281 4.12429 4.21309 4.28956 4.47247 4.58052 4.61084 4.71653 4.81109 4.86465 4.99382 5.02507 5.12778 5.16824 5.19814 5.24048 5.31333 5.41978 5.56168 5.65323 5.68003 5.71668 5.90911 5.96270 6.10539 6.24038 6.51656 6.79889 6.81323 8.23947 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.003879 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.265051 B = 7216.817228 C = 8354.609972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.487 4.487 8 H 0.089 0.911 9 C 0.104 3.896 10 C -0.226 4.226 11 C 0.095 3.905 12 F -0.165 7.165 13 C -0.266 4.266 14 C -0.004 4.004 15 C -0.056 4.056 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.060 4.060 19 C -0.127 4.127 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.225 4.225 25 H 0.291 0.709 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -14.441 -4.245 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.515 4.515 8 H 0.107 0.893 9 C 0.101 3.899 10 C -0.246 4.246 11 C 0.076 3.924 12 F -0.144 7.144 13 C -0.286 4.286 14 C -0.004 4.004 15 C -0.056 4.056 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.060 4.060 19 C -0.145 4.145 20 C -0.210 4.210 21 C -0.204 4.204 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.244 4.244 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.223 -14.292 -4.236 16.153 hybrid contribution -0.451 1.257 0.375 1.387 sum 5.771 -13.035 -3.860 14.769 Atomic orbital electron populations 1.69881 1.09353 1.31000 1.34389 1.26898 0.95464 1.05012 0.90875 0.85069 0.79595 0.75612 0.78946 1.17534 1.18879 1.19099 1.19933 0.98549 0.91779 1.41286 0.89270 1.17638 0.90475 0.93538 0.88202 1.21272 1.02287 0.95800 1.05247 1.17750 0.85374 0.95533 0.93714 1.91327 1.53326 1.97610 1.72116 1.20568 1.02992 0.95297 1.09732 1.18422 0.94027 0.92342 0.95628 1.18982 0.96429 0.91973 0.98246 1.21376 0.96041 0.98794 0.97361 1.21152 1.00686 0.91240 1.00905 1.19458 0.95221 0.94103 0.97203 1.21081 1.02425 0.95186 0.95791 1.23179 0.90368 1.04196 1.03213 1.23099 1.01357 1.03706 0.92221 1.21106 0.96601 0.97625 0.97949 1.21389 1.00052 0.91884 1.00250 1.21351 1.04390 0.91666 1.06979 0.89803 0.87192 0.85438 0.85820 0.84040 0.85667 0.88506 0.86812 0.86825 0.89440 0.83560 0.85459 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.05 10.96 21.82 0.24 -42.81 16 2 C 0.03 1.66 5.14 85.25 0.44 2.10 16 3 Si 0.99 37.22 29.59 68.60 2.03 39.25 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.49 -25.60 9.05 23.47 0.21 -25.39 16 8 H 0.09 4.41 7.90 -2.91 -0.02 4.39 16 9 C 0.10 5.62 5.56 -21.32 -0.12 5.50 16 10 C -0.23 -12.42 8.66 22.80 0.20 -12.22 16 11 C 0.10 4.86 7.28 22.29 0.16 5.02 16 12 F -0.16 -8.04 17.26 44.97 0.78 -7.26 16 13 C -0.27 -12.26 9.41 22.71 0.21 -12.05 16 14 C 0.00 -0.18 5.87 -20.10 -0.12 -0.29 16 15 C -0.06 -2.10 5.88 -20.04 -0.12 -2.21 16 16 C -0.12 -3.89 9.42 22.48 0.21 -3.67 16 17 C -0.12 -3.24 9.28 22.24 0.21 -3.04 16 18 C -0.06 -1.45 5.62 -19.83 -0.11 -1.57 16 19 C -0.13 -2.23 6.03 -11.54 -0.07 -2.30 16 20 C -0.17 -2.52 9.86 30.62 0.30 -2.22 16 21 C -0.17 -2.52 10.16 30.62 0.31 -2.21 16 22 C -0.12 -2.96 9.72 22.24 0.22 -2.74 16 23 C -0.12 -3.75 9.43 22.48 0.21 -3.54 16 24 C -0.22 -10.90 9.17 22.96 0.21 -10.69 16 25 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 26 H 0.11 6.35 6.18 -2.91 -0.02 6.33 16 27 H 0.13 5.14 6.18 -2.90 -0.02 5.12 16 28 H 0.12 4.05 6.20 -2.91 -0.02 4.03 16 29 H 0.14 3.03 6.01 -2.91 -0.02 3.01 16 30 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.46 6.17 -2.39 -0.01 1.44 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.13 3.86 6.19 -2.91 -0.02 3.84 16 37 H 0.12 5.17 6.19 -2.91 -0.02 5.15 16 Total: -1.00 -60.20 314.61 6.51 -53.69 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 1.11 Total: 28.64 kcal Atomic # 6 Polarization: -73.87 SS G_CDS: 2.36 Total: -71.51 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.24 Total: -42.81 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.78 Total: -7.26 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -60.20 6.51 -53.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238835004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.724 kcal (2) G-P(sol) polarization free energy of solvation -60.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds