Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46739 * 239.99649 * 3 2 1 5 5 H 1.48496 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46979 * 120.00024 * 3 2 1 7 7 C 1.38656 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99428 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.35713 * 116.99707 * 185.05382 * 9 7 2 11 11 C 1.39426 * 120.39036 * 354.51588 * 10 9 7 12 12 C 1.38221 * 118.45370 * 179.97438 * 11 10 9 13 13 C 1.39424 * 119.15029 * 359.97438 * 12 11 10 14 14 C 1.48286 * 119.65333 * 180.02562 * 13 12 11 15 15 C 1.39823 * 120.54436 * 184.72183 * 14 13 12 16 16 C 1.38401 * 118.30831 * 180.27118 * 15 14 13 17 17 C 1.38325 * 119.28841 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.47874 * 179.97438 * 17 16 15 19 19 C 1.52995 * 117.50091 * 343.76801 * 18 17 16 20 20 C 1.52997 * 117.49945 * 275.10732 * 18 17 16 21 21 N 1.31899 * 121.03967 * 359.97438 * 17 16 15 22 22 C 1.31733 * 121.86033 * 359.97438 * 21 17 16 23 23 N 1.32689 * 120.69519 * 0.27903 * 13 12 11 24 24 C 1.31660 * 121.68125 * 359.43387 * 23 13 12 25 25 H 0.97003 * 120.00014 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.77149 * 359.95103 * 11 10 9 27 27 H 1.07999 * 120.41998 * 179.97438 * 12 11 10 28 28 H 1.08002 * 120.84467 * 0.25759 * 15 14 13 29 29 H 1.08000 * 120.35627 * 179.97438 * 16 15 14 30 30 H 1.09001 * 115.55210 * 129.44085 * 18 17 16 31 31 H 1.09005 * 117.50050 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.50141 * 145.01848 * 19 18 17 33 33 H 1.09001 * 117.50089 * 214.97968 * 20 18 17 34 34 H 1.09004 * 117.50079 * 359.97438 * 20 18 17 35 35 H 1.07995 * 119.70842 * 179.97438 * 22 21 17 36 36 H 1.08000 * 119.60169 * 180.26767 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3683 0.0005 10 6 2.0698 -3.5041 0.1076 11 6 3.4628 -3.4463 0.0969 12 6 4.1717 -4.6276 0.2090 13 6 3.4748 -5.8292 0.3288 14 6 4.2242 -7.1029 0.4503 15 6 3.5474 -8.3262 0.4725 16 6 4.2923 -9.4864 0.5932 17 6 5.6696 -9.3995 0.6876 18 6 6.4849 -10.6599 0.8198 19 6 5.7480 -11.9390 1.2219 20 6 6.6687 -11.2384 2.2242 21 7 6.2805 -8.2307 0.6638 22 6 5.6143 -7.1000 0.5495 23 7 2.1480 -5.8454 0.3302 24 6 1.4428 -4.7381 0.2306 25 1 -0.4850 0.8401 -0.0004 26 1 3.9759 -2.5006 0.0028 27 1 5.2517 -4.6197 0.2038 28 1 2.4706 -8.3648 0.3976 29 1 3.8035 -10.4492 0.6143 30 1 7.3174 -10.7566 0.1228 31 1 4.6734 -11.8690 1.3904 32 1 6.0958 -12.8773 0.7897 33 1 7.6218 -11.7161 2.4510 34 1 6.2002 -10.7071 3.0527 35 1 6.1499 -6.1624 0.5341 36 1 0.3641 -4.7899 0.2397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238851237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = 65.460613 kcal Electronic energy + Delta-G solvation = -19993.259637 eV Core-core repulsion = 16829.906837 eV Total energy + Delta-G solvation = -3163.352799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40877 -39.49272 -37.53583 -36.82269 -32.88938 -32.37728 -31.90030 -31.03851 -28.51685 -25.88178 -24.33561 -24.05950 -22.67331 -22.07044 -21.75833 -20.55349 -18.28300 -17.57555 -16.93266 -16.28420 -16.02518 -15.36307 -14.91006 -14.75755 -14.46383 -14.23713 -13.82641 -13.68159 -13.46271 -13.01551 -12.56348 -12.47990 -12.38506 -11.91091 -11.81789 -11.64870 -11.25477 -11.19129 -10.82397 -10.67742 -10.63975 -9.93958 -9.73311 -9.33738 -9.23558 -9.14077 -8.91070 -8.75659 -7.30451 -6.71950 -4.27606 0.87136 1.43016 1.94025 2.26067 2.99642 3.01373 3.04136 3.51994 3.75668 3.90089 4.16517 4.54615 4.63655 4.66100 4.75297 4.84625 4.88479 5.01355 5.06029 5.13672 5.25263 5.30886 5.42415 5.55165 5.60798 5.70269 5.82250 5.87147 5.89925 5.90280 5.99487 6.29135 6.39873 6.52004 6.67688 6.83553 6.89290 7.07438 7.32662 7.70150 8.11139 8.60973 8.71941 9.34799 10.43813 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.002883 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.364652 B = 9708.631502 C =10179.136413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.155 6.155 10 C 0.108 3.892 11 C -0.202 4.202 12 C -0.096 4.096 13 C 0.036 3.964 14 C -0.052 4.052 15 C -0.058 4.058 16 C -0.167 4.167 17 C 0.134 3.866 18 C -0.101 4.101 19 C -0.176 4.176 20 C -0.165 4.165 21 N -0.476 5.476 22 C 0.098 3.902 23 N -0.431 5.431 24 C 0.036 3.964 25 H 0.276 0.724 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 -14.965 1.604 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.055 6.055 10 C 0.050 3.950 11 C -0.228 4.228 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.054 4.054 15 C -0.085 4.085 16 C -0.187 4.187 17 C -0.003 4.003 18 C -0.120 4.120 19 C -0.213 4.213 20 C -0.202 4.202 21 N -0.184 5.184 22 C -0.061 4.061 23 N -0.141 5.141 24 C -0.129 4.129 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.141 0.859 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.174 0.826 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.507 -15.459 1.709 18.229 hybrid contribution -0.023 1.780 -0.198 1.791 sum 9.484 -13.679 1.512 16.713 Atomic orbital electron populations 1.70018 1.06129 1.28558 1.43342 1.25400 0.95941 0.99173 0.95848 0.85698 0.78791 0.79092 0.79479 1.19200 1.19980 1.19191 1.21401 0.92045 0.80537 1.53016 0.88698 1.83952 1.34425 1.11500 1.75576 1.20545 0.91035 0.89365 0.94052 1.21461 0.93857 0.99013 1.08471 1.21676 0.99866 0.92119 0.97938 1.18846 0.89419 0.91032 1.10553 1.19520 0.93707 0.92695 0.99520 1.21690 1.01199 0.90827 0.94750 1.21859 0.94456 0.99350 1.03020 1.20226 0.90675 0.92004 0.97417 1.20706 1.01336 0.90166 0.99763 1.23092 0.98986 0.95586 1.03649 1.22964 1.01455 1.03159 0.92633 1.67291 1.40821 0.97810 1.12471 1.22767 0.90521 0.96140 0.96645 1.67286 1.07120 1.29967 1.09689 1.21743 0.99701 0.85237 1.06171 0.91388 0.84293 0.85943 0.83914 0.85002 0.86411 0.88257 0.88216 0.88353 0.88716 0.82624 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.29 13.67 55.48 0.76 -22.54 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.95 19.10 29.55 -169.99 -5.02 14.08 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.39 -10.23 9.50 30.89 0.29 -9.94 16 8 H 0.10 2.24 5.25 -52.48 -0.28 1.97 16 9 O -0.15 -4.11 9.76 0.23 0.00 -4.11 16 10 C 0.11 2.47 6.67 -38.87 -0.26 2.21 16 11 C -0.20 -4.11 9.25 -39.15 -0.36 -4.47 16 12 C -0.10 -1.71 9.46 -39.15 -0.37 -2.08 16 13 C 0.04 0.66 6.73 -82.92 -0.56 0.10 16 14 C -0.05 -0.84 5.89 -104.75 -0.62 -1.46 16 15 C -0.06 -0.86 9.69 -38.93 -0.38 -1.24 16 16 C -0.17 -2.13 9.35 -39.49 -0.37 -2.50 16 17 C 0.13 1.79 6.46 -82.53 -0.53 1.26 16 18 C -0.10 -1.05 6.21 -91.78 -0.57 -1.62 16 19 C -0.18 -1.39 9.79 -26.70 -0.26 -1.65 16 20 C -0.16 -1.45 10.24 -26.70 -0.27 -1.72 16 21 N -0.48 -7.15 10.26 -9.18 -0.09 -7.24 16 22 C 0.10 1.47 10.59 -17.18 -0.18 1.29 16 23 N -0.43 -8.53 9.50 -9.61 -0.09 -8.62 16 24 C 0.04 0.75 11.14 -17.36 -0.19 0.56 16 25 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.14 2.72 5.75 -52.48 -0.30 2.41 16 27 H 0.12 1.76 6.24 -52.49 -0.33 1.43 16 28 H 0.14 2.06 7.63 -52.49 -0.40 1.66 16 29 H 0.13 1.32 6.23 -52.49 -0.33 0.99 16 30 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.16 2.03 6.22 -52.49 -0.33 1.70 16 36 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -29.22 313.16 -8.00 -37.22 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.54 Total: 6.73 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -4.73 Total: -20.25 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.57 Total: -38.40 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: 0.00 Total: -4.11 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.22 -8.00 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238851237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.681 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds