Wall clock time and date at job start Tue Mar 31 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46739 * 239.99649 * 3 2 1 5 5 H 1.48496 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46979 * 120.00024 * 3 2 1 7 7 C 1.38656 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99428 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.35713 * 116.99707 * 185.05382 * 9 7 2 11 11 C 1.39426 * 120.39036 * 354.51588 * 10 9 7 12 12 C 1.38221 * 118.45370 * 179.97438 * 11 10 9 13 13 C 1.39424 * 119.15029 * 359.97438 * 12 11 10 14 14 C 1.48286 * 119.65333 * 180.02562 * 13 12 11 15 15 C 1.39823 * 120.54436 * 184.72183 * 14 13 12 16 16 C 1.38401 * 118.30831 * 180.27118 * 15 14 13 17 17 C 1.38325 * 119.28841 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.47874 * 179.97438 * 17 16 15 19 19 C 1.52995 * 117.50091 * 343.76801 * 18 17 16 20 20 C 1.52997 * 117.49945 * 275.10732 * 18 17 16 21 21 N 1.31899 * 121.03967 * 359.97438 * 17 16 15 22 22 C 1.31733 * 121.86033 * 359.97438 * 21 17 16 23 23 N 1.32689 * 120.69519 * 0.27903 * 13 12 11 24 24 C 1.31660 * 121.68125 * 359.43387 * 23 13 12 25 25 H 0.97003 * 120.00014 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.77149 * 359.95103 * 11 10 9 27 27 H 1.07999 * 120.41998 * 179.97438 * 12 11 10 28 28 H 1.08002 * 120.84467 * 0.25759 * 15 14 13 29 29 H 1.08000 * 120.35627 * 179.97438 * 16 15 14 30 30 H 1.09001 * 115.55210 * 129.44085 * 18 17 16 31 31 H 1.09005 * 117.50050 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.50141 * 145.01848 * 19 18 17 33 33 H 1.09001 * 117.50089 * 214.97968 * 20 18 17 34 34 H 1.09004 * 117.50079 * 359.97438 * 20 18 17 35 35 H 1.07995 * 119.70842 * 179.97438 * 22 21 17 36 36 H 1.08000 * 119.60169 * 180.26767 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0087 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3683 0.0005 10 6 2.0698 -3.5041 0.1076 11 6 3.4628 -3.4463 0.0969 12 6 4.1717 -4.6276 0.2090 13 6 3.4748 -5.8292 0.3288 14 6 4.2242 -7.1029 0.4503 15 6 3.5474 -8.3262 0.4725 16 6 4.2923 -9.4864 0.5932 17 6 5.6696 -9.3995 0.6876 18 6 6.4849 -10.6599 0.8198 19 6 5.7480 -11.9390 1.2219 20 6 6.6687 -11.2384 2.2242 21 7 6.2805 -8.2307 0.6638 22 6 5.6143 -7.1000 0.5495 23 7 2.1480 -5.8454 0.3302 24 6 1.4428 -4.7381 0.2306 25 1 -0.4850 0.8401 -0.0004 26 1 3.9759 -2.5006 0.0028 27 1 5.2517 -4.6197 0.2038 28 1 2.4706 -8.3648 0.3976 29 1 3.8035 -10.4492 0.6143 30 1 7.3174 -10.7566 0.1228 31 1 4.6734 -11.8690 1.3904 32 1 6.0958 -12.8773 0.7897 33 1 7.6218 -11.7161 2.4510 34 1 6.2002 -10.7071 3.0527 35 1 6.1499 -6.1624 0.5341 36 1 0.3641 -4.7899 0.2397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238851237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:21 Heat of formation + Delta-G solvation = 48.881352 kcal Electronic energy + Delta-G solvation = -19993.978567 eV Core-core repulsion = 16829.906837 eV Total energy + Delta-G solvation = -3164.071730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70064 -40.95535 -39.08021 -37.77493 -34.54784 -33.78019 -33.34330 -32.40200 -29.96443 -27.60468 -25.60422 -25.34836 -23.80056 -23.31554 -22.85440 -21.63511 -20.03033 -19.16695 -18.16461 -17.59940 -17.22997 -16.70173 -16.34155 -16.00942 -15.90271 -15.56403 -15.21392 -15.01244 -14.84211 -14.31309 -14.04235 -14.00450 -13.66965 -13.61176 -12.90953 -12.73950 -12.62342 -12.22343 -12.19649 -11.74316 -11.65724 -11.33493 -11.03635 -10.83107 -10.62187 -10.55765 -10.39954 -10.11355 -8.87644 -8.55507 -6.22609 -0.40503 0.29542 0.32488 0.79128 1.36072 1.46590 1.52093 2.12420 2.55632 2.82579 2.94098 3.06083 3.21223 3.28600 3.46786 3.69115 3.81891 3.94490 3.99676 4.01113 4.12189 4.18992 4.23913 4.36696 4.43825 4.58097 4.70611 4.82646 4.88665 4.94006 4.98087 5.12069 5.22171 5.25405 5.28311 5.30892 5.42109 5.66595 5.76379 5.88705 6.86853 6.98665 7.00007 7.58671 8.65365 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.002883 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.364652 B = 9708.631502 C =10179.136413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.015 4.015 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.419 4.419 8 H 0.109 0.891 9 O -0.207 6.207 10 C 0.080 3.920 11 C -0.197 4.197 12 C -0.096 4.096 13 C 0.058 3.942 14 C -0.085 4.085 15 C -0.059 4.059 16 C -0.165 4.165 17 C 0.141 3.859 18 C -0.124 4.124 19 C -0.157 4.157 20 C -0.163 4.163 21 N -0.495 5.495 22 C 0.105 3.895 23 N -0.440 5.440 24 C 0.028 3.972 25 H 0.277 0.723 26 H 0.146 0.854 27 H 0.164 0.836 28 H 0.142 0.858 29 H 0.163 0.837 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.175 0.825 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 -17.571 1.905 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.495 4.495 8 H 0.126 0.874 9 O -0.110 6.110 10 C 0.025 3.975 11 C -0.223 4.223 12 C -0.115 4.115 13 C -0.078 4.078 14 C -0.088 4.088 15 C -0.085 4.085 16 C -0.184 4.184 17 C 0.003 3.997 18 C -0.143 4.143 19 C -0.194 4.194 20 C -0.200 4.200 21 N -0.203 5.203 22 C -0.053 4.053 23 N -0.149 5.149 24 C -0.134 4.134 25 H 0.086 0.914 26 H 0.164 0.836 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.180 0.820 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.191 0.809 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.531 -18.121 2.013 22.124 hybrid contribution -0.698 1.987 -0.236 2.119 sum 11.834 -16.134 1.777 20.087 Atomic orbital electron populations 1.70158 1.08096 1.29396 1.46913 1.26633 0.96831 1.02818 0.95218 0.84629 0.77451 0.73986 0.80111 1.17943 1.19724 1.18003 1.21884 0.92859 0.80981 1.53756 0.87380 1.83945 1.35629 1.12361 1.79070 1.20947 0.92333 0.89159 0.95025 1.21700 0.93046 1.00388 1.07127 1.22059 1.01912 0.90728 0.96797 1.19457 0.89170 0.92588 1.06580 1.19497 0.94314 0.92029 1.02933 1.21845 1.01456 0.91210 0.94020 1.22149 0.94303 0.99962 1.01974 1.20843 0.91398 0.92649 0.94765 1.20813 1.02244 0.89970 1.01282 1.23233 0.99136 0.95122 1.01934 1.23041 1.02634 1.02890 0.91484 1.67415 1.41094 0.98334 1.13437 1.23034 0.89965 0.97120 0.95192 1.67381 1.07965 1.29222 1.10352 1.21888 1.00271 0.85165 1.06056 0.91417 0.83640 0.81814 0.83989 0.81966 0.85853 0.87737 0.86057 0.86694 0.89685 0.80859 0.82478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 13.67 21.61 0.30 -52.61 16 2 C -0.02 -0.82 5.49 84.83 0.47 -0.35 16 3 Si 1.02 40.01 29.55 68.60 2.03 42.04 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.42 -22.71 9.50 67.92 0.64 -22.06 16 8 H 0.11 5.24 5.25 -2.91 -0.02 5.22 16 9 O -0.21 -11.62 9.76 -22.10 -0.22 -11.84 16 10 C 0.08 3.77 6.67 22.73 0.15 3.93 16 11 C -0.20 -7.94 9.25 22.55 0.21 -7.73 16 12 C -0.10 -3.23 9.46 22.55 0.21 -3.01 16 13 C 0.06 2.07 6.73 41.98 0.28 2.35 16 14 C -0.08 -2.57 5.89 -19.95 -0.12 -2.69 16 15 C -0.06 -1.61 9.69 22.69 0.22 -1.39 16 16 C -0.16 -3.67 9.35 22.33 0.21 -3.46 16 17 C 0.14 3.31 6.46 42.57 0.28 3.59 16 18 C -0.12 -2.14 6.21 -11.54 -0.07 -2.21 16 19 C -0.16 -1.81 9.79 30.62 0.30 -1.51 16 20 C -0.16 -2.28 10.24 30.62 0.31 -1.97 16 21 N -0.49 -13.44 10.26 -182.96 -1.88 -15.31 16 22 C 0.11 2.86 10.59 84.98 0.90 3.76 16 23 N -0.44 -17.27 9.50 -184.33 -1.75 -19.03 16 24 C 0.03 1.20 11.14 84.89 0.95 2.15 16 25 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.15 5.63 5.75 -2.91 -0.02 5.61 16 27 H 0.16 4.11 6.24 -2.91 -0.02 4.09 16 28 H 0.14 3.87 7.63 -2.91 -0.02 3.84 16 29 H 0.16 2.57 6.23 -2.91 -0.02 2.55 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 1.11 6.37 -2.38 -0.02 1.09 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.17 3.90 6.22 -2.91 -0.02 3.88 16 36 H 0.16 6.44 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -66.82 313.16 4.54 -62.28 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 1.13 Total: 25.09 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.94 Total: -30.62 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.33 Total: -86.95 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.22 Total: -11.84 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -66.82 4.54 -62.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238851237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.159 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds