Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48504 * 109.47045 * 270.00241 * 3 2 1 5 5 H 1.48496 * 109.46985 * 30.00033 * 3 2 1 6 6 H 1.48493 * 109.46907 * 150.00401 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99743 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00505 * 179.97438 * 7 2 1 10 10 C 1.50692 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.38338 * 119.87316 * 90.00434 * 10 9 7 12 12 C 1.38000 * 120.12876 * 179.97438 * 11 10 9 13 13 C 1.39399 * 119.87023 * 359.97438 * 12 11 10 14 14 C 1.48276 * 120.12755 * 179.97438 * 13 12 11 15 15 C 1.39778 * 120.44336 * 180.27175 * 14 13 12 16 16 C 1.38287 * 118.38076 * 180.26574 * 15 14 13 17 17 C 1.39454 * 119.18978 * 359.73613 * 16 15 14 18 18 C 1.48022 * 119.59349 * 179.97438 * 17 16 15 19 19 N 1.34780 * 120.00019 * 180.02562 * 18 17 16 20 20 O 1.21539 * 120.00130 * 0.02562 * 18 17 16 21 21 N 1.32799 * 120.80944 * 359.97438 * 17 16 15 22 22 C 1.31336 * 121.77161 * 0.02562 * 21 17 16 23 23 C 1.39411 * 119.74931 * 0.26095 * 13 12 11 24 24 C 1.38000 * 119.86513 * 359.48617 * 23 13 12 25 25 H 0.97002 * 119.99685 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46585 * 59.99727 * 9 7 2 27 27 H 1.09003 * 109.46855 * 299.99890 * 9 7 2 28 28 H 1.07996 * 119.93498 * 359.97438 * 11 10 9 29 29 H 1.08007 * 120.06149 * 180.02562 * 12 11 10 30 30 H 1.07991 * 120.80670 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.40298 * 179.75249 * 16 15 14 32 32 H 0.96997 * 119.99551 * 0.02562 * 19 18 17 33 33 H 0.96999 * 119.99850 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.63241 * 179.97438 * 22 21 17 35 35 H 1.07998 * 120.06725 * 179.72079 * 23 13 12 36 36 H 1.07999 * 119.93466 * 180.25826 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2430 -3.2648 -1.2005 12 6 4.7035 -4.5657 -1.2066 13 6 4.9381 -5.2247 -0.0008 14 6 5.4323 -6.6227 -0.0006 15 6 5.6643 -7.2917 1.2045 16 6 6.1304 -8.5927 1.1549 17 6 6.3463 -9.1910 -0.0861 18 6 6.8456 -10.5830 -0.1496 19 7 7.0577 -11.1690 -1.3447 20 8 7.0644 -11.1976 0.8759 21 7 6.1094 -8.5272 -1.2116 22 6 5.6665 -7.2908 -1.2051 23 6 4.7005 -4.5665 1.2050 24 6 4.2451 -3.2638 1.1986 25 1 -0.4850 0.8401 -0.0004 26 1 3.8751 -0.6805 0.8889 27 1 3.8745 -0.6801 -0.8912 28 1 4.0613 -2.7531 -2.1340 29 1 4.8825 -5.0719 -2.1437 30 1 5.4884 -6.8029 2.1512 31 1 6.3245 -9.1389 2.0662 32 1 6.8834 -10.6784 -2.1631 33 1 7.3852 -12.0811 -1.3863 34 1 5.4860 -6.7833 -2.1412 35 1 4.8762 -5.0737 2.1421 36 1 4.0647 -2.7514 2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239554597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = 10.731396 kcal Electronic energy + Delta-G solvation = -19847.723400 eV Core-core repulsion = 16681.997364 eV Total energy + Delta-G solvation = -3165.726036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83248 -39.32668 -38.41187 -34.45456 -33.81985 -32.72232 -32.24291 -30.62396 -30.48914 -27.59641 -24.90398 -24.17237 -22.62574 -21.75673 -21.23026 -20.16152 -18.51684 -17.31909 -16.94202 -16.87625 -16.11662 -15.45206 -15.28670 -14.91370 -14.40077 -14.27862 -14.19114 -13.81239 -13.63035 -13.52844 -12.82004 -12.66682 -12.52404 -12.08226 -11.74683 -11.47740 -10.88437 -10.64956 -10.49660 -10.40441 -10.11468 -10.03437 -9.98571 -9.75843 -9.59147 -9.36538 -8.67889 -8.58860 -7.72920 -6.16460 -4.16961 0.18785 1.02466 1.79243 1.80572 2.64674 3.14977 3.21749 3.30370 3.31738 3.67807 3.97256 4.27992 4.32922 4.53783 4.59954 4.64571 4.78215 5.04614 5.13794 5.19159 5.30860 5.53366 5.66106 5.67939 5.78628 5.91251 6.05746 6.26681 6.31568 6.40269 6.47362 6.76093 6.78533 6.84621 6.88040 7.00099 7.35453 7.39983 7.52851 7.58584 7.96438 8.38225 8.87740 9.42907 10.96213 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.049253 B = 0.002783 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.354652 B =10058.298650 C =10222.424182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.010 3.990 10 C -0.009 4.009 11 C -0.123 4.123 12 C -0.097 4.097 13 C -0.096 4.096 14 C -0.036 4.036 15 C -0.089 4.089 16 C -0.099 4.099 17 C 0.048 3.952 18 C 0.581 3.419 19 N -0.837 5.837 20 O -0.542 6.542 21 N -0.453 5.453 22 C 0.095 3.905 23 C -0.097 4.097 24 C -0.123 4.123 25 H 0.265 0.735 26 H 0.030 0.970 27 H 0.026 0.974 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.412 0.588 33 H 0.403 0.597 34 H 0.166 0.834 35 H 0.118 0.882 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -15.359 -2.211 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.027 4.027 10 C -0.009 4.009 11 C -0.141 4.141 12 C -0.115 4.115 13 C -0.097 4.097 14 C -0.039 4.039 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.090 4.090 18 C 0.365 3.635 19 N -0.400 5.400 20 O -0.418 6.418 21 N -0.164 5.164 22 C -0.065 4.065 23 C -0.115 4.115 24 C -0.141 4.141 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.242 0.758 33 H 0.234 0.766 34 H 0.183 0.817 35 H 0.136 0.864 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.926 -15.960 -2.239 21.299 hybrid contribution 0.052 1.261 0.315 1.301 sum 13.978 -14.698 -1.924 20.375 Atomic orbital electron populations 1.69894 1.06277 1.27122 1.50221 1.24999 0.94751 0.99064 0.94354 0.86802 0.80375 0.83617 0.78705 1.20090 1.21168 1.18918 1.20875 0.87980 0.94752 1.51834 0.90768 1.18890 0.97652 0.88483 0.97674 1.20498 0.90292 0.97946 0.92183 1.21049 1.00100 0.94352 0.98572 1.21111 0.98987 0.94935 0.96479 1.18370 1.05453 0.91618 0.94263 1.20123 0.95415 0.94230 0.94098 1.21718 0.97071 0.93847 0.98800 1.22017 0.96188 0.94966 0.98822 1.20931 1.03040 0.94928 0.90066 1.17865 0.76666 0.85157 0.83768 1.43636 1.69051 1.18558 1.08784 1.90827 1.52274 1.64489 1.34241 1.67413 1.10014 1.09018 1.29930 1.22886 0.95971 0.89701 0.97972 1.21122 0.98942 0.94893 0.96558 1.21046 1.00139 0.94323 0.98576 0.92469 0.95158 0.95564 0.85693 0.86248 0.83687 0.83459 0.75777 0.76593 0.81663 0.86383 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.52 -13.99 9.65 -34.44 -0.33 -14.33 16 8 H 0.07 2.21 7.98 -52.48 -0.42 1.79 16 9 C 0.01 0.23 4.17 -29.04 -0.12 0.10 16 10 C -0.01 -0.18 5.07 -104.55 -0.53 -0.71 16 11 C -0.12 -2.07 9.68 -39.63 -0.38 -2.46 16 12 C -0.10 -1.37 9.44 -39.24 -0.37 -1.74 16 13 C -0.10 -1.34 5.88 -104.90 -0.62 -1.95 16 14 C -0.04 -0.44 5.90 -104.64 -0.62 -1.06 16 15 C -0.09 -0.98 9.52 -38.99 -0.37 -1.35 16 16 C -0.10 -1.11 9.61 -39.11 -0.38 -1.48 16 17 C 0.05 0.56 6.75 -82.98 -0.56 0.00 16 18 C 0.58 6.69 8.08 -12.25 -0.10 6.60 16 19 N -0.84 -6.45 8.86 30.57 0.27 -6.18 16 20 O -0.54 -7.79 17.15 5.33 0.09 -7.70 16 21 N -0.45 -5.13 9.52 -9.54 -0.09 -5.22 16 22 C 0.10 1.07 10.60 -17.21 -0.18 0.89 16 23 C -0.10 -1.40 9.44 -39.23 -0.37 -1.77 16 24 C -0.12 -2.10 9.68 -39.63 -0.38 -2.48 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 27 H 0.03 0.57 7.51 -51.93 -0.39 0.18 16 28 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.12 1.31 6.23 -52.48 -0.33 0.98 16 30 H 0.15 1.31 6.31 -52.49 -0.33 0.98 16 31 H 0.15 1.49 7.63 -52.48 -0.40 1.09 16 32 H 0.41 2.63 8.15 -40.82 -0.33 2.30 16 33 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 34 H 0.17 1.51 6.22 -52.49 -0.33 1.18 16 35 H 0.12 1.36 6.26 -52.49 -0.33 1.03 16 36 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -32.10 313.43 -7.92 -40.02 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.60 Total: 4.28 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -5.41 Total: -19.87 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.95 Total: -37.32 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.10 -7.92 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239554597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.749 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds